data_7KDP # _model_server_result.job_id rym_F9b7Znj8SAEL84lhig _model_server_result.datetime_utc '2025-02-20 21:55:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1012}' # _entry.id 7KDP # _exptl.entry_id 7KDP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KDP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 94 A CYS 94 1_555 A SG CYS 551 A CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 111 A CYS 111 1_555 A SG CYS 507 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 185 A CYS 185 1_555 A SG CYS 250 A CYS 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 344 A CYS 344 1_555 A SG CYS 391 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 574 A CYS 574 1_555 A SG CYS 611 A CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 94 B CYS 94 1_555 B SG CYS 551 B CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 111 B CYS 111 1_555 B SG CYS 507 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 185 B CYS 185 1_555 B SG CYS 250 B CYS 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 344 B CYS 344 1_555 B SG CYS 391 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 574 B CYS 574 1_555 B SG CYS 611 B CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 C SG CYS 94 C CYS 94 1_555 C SG CYS 551 C CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 C SG CYS 111 C CYS 111 1_555 C SG CYS 507 C CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 185 C CYS 185 1_555 C SG CYS 250 C CYS 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 C SG CYS 344 C CYS 344 1_555 C SG CYS 391 C CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 C SG CYS 574 C CYS 574 1_555 C SG CYS 611 C CYS 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 208 A ASN 208 1_555 D C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 281 A ASN 281 1_555 E C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 286 A ASN 286 1_555 F C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 A ND2 ASN 302 A ASN 302 1_555 G C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 H C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 A ND2 ASN 383 A ASN 383 1_555 I C1 NAG . A NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 A ND2 ASN 405 A ASN 405 1_555 J C1 NAG . A NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 A ND2 ASN 417 A ASN 417 1_555 K C1 NAG . A NAG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 A ND2 ASN 555 A ASN 555 1_555 L C1 NAG . A NAG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 A ND2 ASN 586 A ASN 586 1_555 M C1 NAG . A NAG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 B ND2 ASN 208 B ASN 208 1_555 Q C1 NAG . B NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 B ND2 ASN 281 B ASN 281 1_555 R C1 NAG . B NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 B ND2 ASN 286 B ASN 286 1_555 S C1 NAG . B NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale14 B ND2 ASN 302 B ASN 302 1_555 T C1 NAG . B NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 B ND2 ASN 341 B ASN 341 1_555 U C1 NAG . B NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale16 B ND2 ASN 383 B ASN 383 1_555 V C1 NAG . B NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 B ND2 ASN 405 B ASN 405 1_555 W C1 NAG . B NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 B ND2 ASN 417 B ASN 417 1_555 X C1 NAG . B NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale19 B ND2 ASN 555 B ASN 555 1_555 Y C1 NAG . B NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale20 B ND2 ASN 586 B ASN 586 1_555 Z C1 NAG . B NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale21 C ND2 ASN 208 C ASN 208 1_555 BA C1 NAG . C NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale22 C ND2 ASN 281 C ASN 281 1_555 CA C1 NAG . C NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale23 C ND2 ASN 286 C ASN 286 1_555 DA C1 NAG . C NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale24 C ND2 ASN 302 C ASN 302 1_555 EA C1 NAG . C NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale25 C ND2 ASN 341 C ASN 341 1_555 FA C1 NAG . C NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale26 C ND2 ASN 383 C ASN 383 1_555 GA C1 NAG . C NAG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale27 C ND2 ASN 405 C ASN 405 1_555 HA C1 NAG . C NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale28 C ND2 ASN 417 C ASN 417 1_555 IA C1 NAG . C NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale29 C ND2 ASN 555 C ASN 555 1_555 JA C1 NAG . C NAG 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale30 C ND2 ASN 586 C ASN 586 1_555 KA C1 NAG . C NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KDP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 1001 1102 NAG NAG . E 2 NAG A 1 1002 1103 NAG NAG . F 2 NAG A 1 1003 1104 NAG NAG . G 2 NAG A 1 1004 1105 NAG NAG . H 2 NAG A 1 1005 1106 NAG NAG . I 2 NAG A 1 1006 1107 NAG NAG . J 2 NAG A 1 1007 1108 NAG NAG . K 2 NAG A 1 1008 1109 NAG NAG . L 2 NAG A 1 1009 1110 NAG NAG . M 2 NAG A 1 1010 1111 NAG NAG . N 3 WCY A 1 1011 1101 WCY PFE . O 4 CA A 1 1012 1 CA CA . P 3 WCY B 1 1101 1101 WCY PFE . Q 2 NAG B 1 1102 1102 NAG NAG . R 2 NAG B 1 1103 1103 NAG NAG . S 2 NAG B 1 1104 1104 NAG NAG . T 2 NAG B 1 1105 1105 NAG NAG . U 2 NAG B 1 1106 1106 NAG NAG . V 2 NAG B 1 1107 1107 NAG NAG . W 2 NAG B 1 1108 1108 NAG NAG . X 2 NAG B 1 1109 1109 NAG NAG . Y 2 NAG B 1 1110 1110 NAG NAG . Z 2 NAG B 1 1111 1111 NAG NAG . AA 3 WCY C 1 1101 1101 WCY PFE . BA 2 NAG C 1 1102 1102 NAG NAG . CA 2 NAG C 1 1103 1103 NAG NAG . DA 2 NAG C 1 1104 1104 NAG NAG . EA 2 NAG C 1 1105 1105 NAG NAG . FA 2 NAG C 1 1106 1106 NAG NAG . GA 2 NAG C 1 1107 1107 NAG NAG . HA 2 NAG C 1 1108 1108 NAG NAG . IA 2 NAG C 1 1109 1109 NAG NAG . JA 2 NAG C 1 1110 1110 NAG NAG . KA 2 NAG C 1 1111 1111 NAG NAG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x 192.64 _atom_site.Cartn_y 192.64 _atom_site.Cartn_z 182.542 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 105.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1012 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #