data_7KDR
#
_model_server_result.job_id            kQfNpZZ-o6qbuzXjTi2E7g 
_model_server_result.datetime_utc      '2025-03-09 04:41:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    7KDR 
#
_exptl.entry_id    7KDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.54 
_cell.angle_gamma         90 
_cell.entry_id            7KDR 
_cell.length_a            61.446 
_cell.length_b            42.797 
_cell.length_c            56.283 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     7KDR 
_atom_sites.fract_transf_matrix[1][1]    0.016274 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003323 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023366 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018134 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J1L A 1 201 171 J1L J1L . 
C 3 CL A 1 202 201 CL CL . 
D 4 EDO A 1 203 301 EDO EDO . 
E 4 EDO A 1 204 302 EDO EDO . 
F 5 HOH A 1 301 128 HOH HOH . 
F 5 HOH A 2 302 261 HOH HOH . 
F 5 HOH A 3 303 214 HOH HOH . 
F 5 HOH A 4 304 260 HOH HOH . 
F 5 HOH A 5 305 126 HOH HOH . 
F 5 HOH A 6 306 25 HOH HOH . 
F 5 HOH A 7 307 117 HOH HOH . 
F 5 HOH A 8 308 72 HOH HOH . 
F 5 HOH A 9 309 184 HOH HOH . 
F 5 HOH A 10 310 42 HOH HOH . 
F 5 HOH A 11 311 189 HOH HOH . 
F 5 HOH A 12 312 227 HOH HOH . 
F 5 HOH A 13 313 188 HOH HOH . 
F 5 HOH A 14 314 16 HOH HOH . 
F 5 HOH A 15 315 183 HOH HOH . 
F 5 HOH A 16 316 169 HOH HOH . 
F 5 HOH A 17 317 266 HOH HOH . 
F 5 HOH A 18 318 180 HOH HOH . 
F 5 HOH A 19 319 232 HOH HOH . 
F 5 HOH A 20 320 15 HOH HOH . 
F 5 HOH A 21 321 60 HOH HOH . 
F 5 HOH A 22 322 106 HOH HOH . 
F 5 HOH A 23 323 140 HOH HOH . 
F 5 HOH A 24 324 145 HOH HOH . 
F 5 HOH A 25 325 138 HOH HOH . 
F 5 HOH A 26 326 30 HOH HOH . 
F 5 HOH A 27 327 115 HOH HOH . 
F 5 HOH A 28 328 192 HOH HOH . 
F 5 HOH A 29 329 63 HOH HOH . 
F 5 HOH A 30 330 94 HOH HOH . 
F 5 HOH A 31 331 208 HOH HOH . 
F 5 HOH A 32 332 164 HOH HOH . 
F 5 HOH A 33 333 134 HOH HOH . 
F 5 HOH A 34 334 108 HOH HOH . 
F 5 HOH A 35 335 173 HOH HOH . 
F 5 HOH A 36 336 141 HOH HOH . 
F 5 HOH A 37 337 27 HOH HOH . 
F 5 HOH A 38 338 62 HOH HOH . 
F 5 HOH A 39 339 230 HOH HOH . 
F 5 HOH A 40 340 118 HOH HOH . 
F 5 HOH A 41 341 137 HOH HOH . 
F 5 HOH A 42 342 47 HOH HOH . 
F 5 HOH A 43 343 34 HOH HOH . 
F 5 HOH A 44 344 3 HOH HOH . 
F 5 HOH A 45 345 19 HOH HOH . 
F 5 HOH A 46 346 194 HOH HOH . 
F 5 HOH A 47 347 143 HOH HOH . 
F 5 HOH A 48 348 185 HOH HOH . 
F 5 HOH A 49 349 84 HOH HOH . 
F 5 HOH A 50 350 9 HOH HOH . 
F 5 HOH A 51 351 238 HOH HOH . 
F 5 HOH A 52 352 59 HOH HOH . 
F 5 HOH A 53 353 112 HOH HOH . 
F 5 HOH A 54 354 13 HOH HOH . 
F 5 HOH A 55 355 33 HOH HOH . 
F 5 HOH A 56 356 177 HOH HOH . 
F 5 HOH A 57 357 37 HOH HOH . 
F 5 HOH A 58 358 101 HOH HOH . 
F 5 HOH A 59 359 222 HOH HOH . 
F 5 HOH A 60 360 18 HOH HOH . 
F 5 HOH A 61 361 11 HOH HOH . 
F 5 HOH A 62 362 149 HOH HOH . 
F 5 HOH A 63 363 197 HOH HOH . 
F 5 HOH A 64 364 68 HOH HOH . 
F 5 HOH A 65 365 56 HOH HOH . 
F 5 HOH A 66 366 205 HOH HOH . 
F 5 HOH A 67 367 158 HOH HOH . 
F 5 HOH A 68 368 178 HOH HOH . 
F 5 HOH A 69 369 17 HOH HOH . 
F 5 HOH A 70 370 77 HOH HOH . 
F 5 HOH A 71 371 1 HOH HOH . 
F 5 HOH A 72 372 61 HOH HOH . 
F 5 HOH A 73 373 124 HOH HOH . 
F 5 HOH A 74 374 144 HOH HOH . 
F 5 HOH A 75 375 218 HOH HOH . 
F 5 HOH A 76 376 240 HOH HOH . 
F 5 HOH A 77 377 148 HOH HOH . 
F 5 HOH A 78 378 133 HOH HOH . 
F 5 HOH A 79 379 69 HOH HOH . 
F 5 HOH A 80 380 31 HOH HOH . 
F 5 HOH A 81 381 21 HOH HOH . 
F 5 HOH A 82 382 73 HOH HOH . 
F 5 HOH A 83 383 195 HOH HOH . 
F 5 HOH A 84 384 10 HOH HOH . 
F 5 HOH A 85 385 136 HOH HOH . 
F 5 HOH A 86 386 212 HOH HOH . 
F 5 HOH A 87 387 221 HOH HOH . 
F 5 HOH A 88 388 12 HOH HOH . 
F 5 HOH A 89 389 182 HOH HOH . 
F 5 HOH A 90 390 130 HOH HOH . 
F 5 HOH A 91 391 139 HOH HOH . 
F 5 HOH A 92 392 36 HOH HOH . 
F 5 HOH A 93 393 75 HOH HOH . 
F 5 HOH A 94 394 4 HOH HOH . 
F 5 HOH A 95 395 41 HOH HOH . 
F 5 HOH A 96 396 216 HOH HOH . 
F 5 HOH A 97 397 154 HOH HOH . 
F 5 HOH A 98 398 153 HOH HOH . 
F 5 HOH A 99 399 206 HOH HOH . 
F 5 HOH A 100 400 39 HOH HOH . 
F 5 HOH A 101 401 217 HOH HOH . 
F 5 HOH A 102 402 54 HOH HOH . 
F 5 HOH A 103 403 241 HOH HOH . 
F 5 HOH A 104 404 198 HOH HOH . 
F 5 HOH A 105 405 167 HOH HOH . 
F 5 HOH A 106 406 155 HOH HOH . 
F 5 HOH A 107 407 103 HOH HOH . 
F 5 HOH A 108 408 46 HOH HOH . 
F 5 HOH A 109 409 85 HOH HOH . 
F 5 HOH A 110 410 239 HOH HOH . 
F 5 HOH A 111 411 225 HOH HOH . 
F 5 HOH A 112 412 98 HOH HOH . 
F 5 HOH A 113 413 160 HOH HOH . 
F 5 HOH A 114 414 91 HOH HOH . 
F 5 HOH A 115 415 162 HOH HOH . 
F 5 HOH A 116 416 142 HOH HOH . 
F 5 HOH A 117 417 49 HOH HOH . 
F 5 HOH A 118 418 67 HOH HOH . 
F 5 HOH A 119 419 53 HOH HOH . 
F 5 HOH A 120 420 119 HOH HOH . 
F 5 HOH A 121 421 23 HOH HOH . 
F 5 HOH A 122 422 82 HOH HOH . 
F 5 HOH A 123 423 50 HOH HOH . 
F 5 HOH A 124 424 168 HOH HOH . 
F 5 HOH A 125 425 71 HOH HOH . 
F 5 HOH A 126 426 190 HOH HOH . 
F 5 HOH A 127 427 48 HOH HOH . 
F 5 HOH A 128 428 78 HOH HOH . 
F 5 HOH A 129 429 211 HOH HOH . 
F 5 HOH A 130 430 7 HOH HOH . 
F 5 HOH A 131 431 129 HOH HOH . 
F 5 HOH A 132 432 170 HOH HOH . 
F 5 HOH A 133 433 127 HOH HOH . 
F 5 HOH A 134 434 2 HOH HOH . 
F 5 HOH A 135 435 14 HOH HOH . 
F 5 HOH A 136 436 196 HOH HOH . 
F 5 HOH A 137 437 209 HOH HOH . 
F 5 HOH A 138 438 201 HOH HOH . 
F 5 HOH A 139 439 228 HOH HOH . 
F 5 HOH A 140 440 89 HOH HOH . 
F 5 HOH A 141 441 38 HOH HOH . 
F 5 HOH A 142 442 132 HOH HOH . 
F 5 HOH A 143 443 64 HOH HOH . 
F 5 HOH A 144 444 107 HOH HOH . 
F 5 HOH A 145 445 220 HOH HOH . 
F 5 HOH A 146 446 44 HOH HOH . 
F 5 HOH A 147 447 86 HOH HOH . 
F 5 HOH A 148 448 102 HOH HOH . 
F 5 HOH A 149 449 95 HOH HOH . 
F 5 HOH A 150 450 152 HOH HOH . 
F 5 HOH A 151 451 55 HOH HOH . 
F 5 HOH A 152 452 109 HOH HOH . 
F 5 HOH A 153 453 122 HOH HOH . 
F 5 HOH A 154 454 215 HOH HOH . 
F 5 HOH A 155 455 254 HOH HOH . 
F 5 HOH A 156 456 6 HOH HOH . 
F 5 HOH A 157 457 125 HOH HOH . 
F 5 HOH A 158 458 35 HOH HOH . 
F 5 HOH A 159 459 229 HOH HOH . 
F 5 HOH A 160 460 22 HOH HOH . 
F 5 HOH A 161 461 248 HOH HOH . 
F 5 HOH A 162 462 26 HOH HOH . 
F 5 HOH A 163 463 150 HOH HOH . 
F 5 HOH A 164 464 193 HOH HOH . 
F 5 HOH A 165 465 104 HOH HOH . 
F 5 HOH A 166 466 51 HOH HOH . 
F 5 HOH A 167 467 253 HOH HOH . 
F 5 HOH A 168 468 116 HOH HOH . 
F 5 HOH A 169 469 66 HOH HOH . 
F 5 HOH A 170 470 74 HOH HOH . 
F 5 HOH A 171 471 256 HOH HOH . 
F 5 HOH A 172 472 203 HOH HOH . 
F 5 HOH A 173 473 245 HOH HOH . 
F 5 HOH A 174 474 237 HOH HOH . 
F 5 HOH A 175 475 28 HOH HOH . 
F 5 HOH A 176 476 249 HOH HOH . 
F 5 HOH A 177 477 79 HOH HOH . 
F 5 HOH A 178 478 247 HOH HOH . 
F 5 HOH A 179 479 146 HOH HOH . 
F 5 HOH A 180 480 8 HOH HOH . 
F 5 HOH A 181 481 45 HOH HOH . 
F 5 HOH A 182 482 242 HOH HOH . 
F 5 HOH A 183 483 165 HOH HOH . 
F 5 HOH A 184 484 111 HOH HOH . 
F 5 HOH A 185 485 207 HOH HOH . 
F 5 HOH A 186 486 90 HOH HOH . 
F 5 HOH A 187 487 88 HOH HOH . 
F 5 HOH A 188 488 135 HOH HOH . 
F 5 HOH A 189 489 5 HOH HOH . 
F 5 HOH A 190 490 100 HOH HOH . 
F 5 HOH A 191 491 172 HOH HOH . 
F 5 HOH A 192 492 24 HOH HOH . 
F 5 HOH A 193 493 234 HOH HOH . 
F 5 HOH A 194 494 250 HOH HOH . 
F 5 HOH A 195 495 175 HOH HOH . 
F 5 HOH A 196 496 219 HOH HOH . 
F 5 HOH A 197 497 246 HOH HOH . 
F 5 HOH A 198 498 224 HOH HOH . 
F 5 HOH A 199 499 81 HOH HOH . 
F 5 HOH A 200 500 110 HOH HOH . 
F 5 HOH A 201 501 236 HOH HOH . 
F 5 HOH A 202 502 156 HOH HOH . 
F 5 HOH A 203 503 262 HOH HOH . 
F 5 HOH A 204 504 123 HOH HOH . 
F 5 HOH A 205 505 265 HOH HOH . 
F 5 HOH A 206 506 186 HOH HOH . 
F 5 HOH A 207 507 235 HOH HOH . 
F 5 HOH A 208 508 157 HOH HOH . 
F 5 HOH A 209 509 199 HOH HOH . 
F 5 HOH A 210 510 43 HOH HOH . 
F 5 HOH A 211 511 269 HOH HOH . 
F 5 HOH A 212 512 57 HOH HOH . 
F 5 HOH A 213 513 191 HOH HOH . 
F 5 HOH A 214 514 174 HOH HOH . 
F 5 HOH A 215 515 96 HOH HOH . 
F 5 HOH A 216 516 105 HOH HOH . 
F 5 HOH A 217 517 213 HOH HOH . 
F 5 HOH A 218 518 163 HOH HOH . 
F 5 HOH A 219 519 120 HOH HOH . 
F 5 HOH A 220 520 147 HOH HOH . 
F 5 HOH A 221 521 226 HOH HOH . 
F 5 HOH A 222 522 181 HOH HOH . 
F 5 HOH A 223 523 268 HOH HOH . 
F 5 HOH A 224 524 264 HOH HOH . 
F 5 HOH A 225 525 93 HOH HOH . 
F 5 HOH A 226 526 263 HOH HOH . 
F 5 HOH A 227 527 58 HOH HOH . 
F 5 HOH A 228 528 161 HOH HOH . 
F 5 HOH A 229 529 76 HOH HOH . 
F 5 HOH A 230 530 114 HOH HOH . 
F 5 HOH A 231 531 166 HOH HOH . 
F 5 HOH A 232 532 87 HOH HOH . 
F 5 HOH A 233 533 99 HOH HOH . 
F 5 HOH A 234 534 29 HOH HOH . 
F 5 HOH A 235 535 259 HOH HOH . 
F 5 HOH A 236 536 252 HOH HOH . 
F 5 HOH A 237 537 80 HOH HOH . 
F 5 HOH A 238 538 233 HOH HOH . 
F 5 HOH A 239 539 52 HOH HOH . 
F 5 HOH A 240 540 271 HOH HOH . 
F 5 HOH A 241 541 113 HOH HOH . 
F 5 HOH A 242 542 151 HOH HOH . 
F 5 HOH A 243 543 70 HOH HOH . 
F 5 HOH A 244 544 92 HOH HOH . 
F 5 HOH A 245 545 231 HOH HOH . 
F 5 HOH A 246 546 267 HOH HOH . 
F 5 HOH A 247 547 179 HOH HOH . 
F 5 HOH A 248 548 65 HOH HOH . 
F 5 HOH A 249 549 200 HOH HOH . 
F 5 HOH A 250 550 251 HOH HOH . 
F 5 HOH A 251 551 187 HOH HOH . 
F 5 HOH A 252 552 32 HOH HOH . 
F 5 HOH A 253 553 257 HOH HOH . 
F 5 HOH A 254 554 202 HOH HOH . 
F 5 HOH A 255 555 258 HOH HOH . 
F 5 HOH A 256 556 223 HOH HOH . 
F 5 HOH A 257 557 270 HOH HOH . 
F 5 HOH A 258 558 244 HOH HOH . 
F 5 HOH A 259 559 243 HOH HOH . 
F 5 HOH A 260 560 204 HOH HOH . 
F 5 HOH A 261 561 210 HOH HOH . 
F 5 HOH A 262 562 255 HOH HOH . 
F 5 HOH A 263 563 159 HOH HOH . 
F 5 HOH A 264 564 20 HOH HOH . 
F 5 HOH A 265 565 83 HOH HOH . 
F 5 HOH A 266 566 97 HOH HOH . 
F 5 HOH A 267 567 171 HOH HOH . 
F 5 HOH A 268 568 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 9.54 28.532 28.058 1 58.86 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . D 4 9.262 27.635 29.099 1 88.33 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . D 4 10.932 29.031 28.104 1 58.75 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . D 4 11.854 28.07 27.654 1 86.1 ? O2 EDO 203 A 1 
HETATM 5 H H11 EDO . . . D 4 9.389 28.085 27.199 1 70.66 ? H11 EDO 203 A 1 
HETATM 6 H H12 EDO . . . D 4 8.926 29.294 28.118 1 70.66 ? H12 EDO 203 A 1 
HETATM 7 H HO1 EDO . . . D 4 9.787 27.785 29.745 1 106.03 ? HO1 EDO 203 A 1 
HETATM 8 H H21 EDO . . . D 4 11.003 29.832 27.545 1 70.53 ? H21 EDO 203 A 1 
HETATM 9 H H22 EDO . . . D 4 11.151 29.28 29.026 1 70.53 ? H22 EDO 203 A 1 
HETATM 10 H HO2 EDO . . . D 4 12.341 28.41 27.051 1 103.35 ? HO2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#