data_7KDW
#
_model_server_result.job_id            I4iB6V8slUiyBshlt0KkIg 
_model_server_result.datetime_utc      '2025-01-25 15:26:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kdw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3102}' 
#
_entry.id    7KDW 
#
_exptl.entry_id    7KDW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.63 
_cell.angle_beta          103.82 
_cell.angle_gamma         90.88 
_cell.entry_id            7KDW 
_cell.length_a            27.22 
_cell.length_b            37.96 
_cell.length_c            57.07 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KDW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7KDW 
_atom_sites.fract_transf_matrix[1][1]    0.036738 
_atom_sites.fract_transf_matrix[1][2]    0.000561 
_atom_sites.fract_transf_matrix[1][3]    0.009175 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026347 
_atom_sites.fract_transf_matrix[2][3]    0.003255 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WCV A 1 3101 2 WCV H52 . 
D 3 EDO A 1 3102 1 EDO EDO . 
E 2 WCV B 1 3101 1 WCV H52 . 
F 4 HOH A 1 3201 70 HOH HOH . 
F 4 HOH A 2 3202 30 HOH HOH . 
F 4 HOH A 3 3203 26 HOH HOH . 
F 4 HOH A 4 3204 112 HOH HOH . 
F 4 HOH A 5 3205 155 HOH HOH . 
F 4 HOH A 6 3206 129 HOH HOH . 
F 4 HOH A 7 3207 14 HOH HOH . 
F 4 HOH A 8 3208 94 HOH HOH . 
F 4 HOH A 9 3209 3 HOH HOH . 
F 4 HOH A 10 3210 53 HOH HOH . 
F 4 HOH A 11 3211 110 HOH HOH . 
F 4 HOH A 12 3212 41 HOH HOH . 
F 4 HOH A 13 3213 143 HOH HOH . 
F 4 HOH A 14 3214 5 HOH HOH . 
F 4 HOH A 15 3215 59 HOH HOH . 
F 4 HOH A 16 3216 153 HOH HOH . 
F 4 HOH A 17 3217 104 HOH HOH . 
F 4 HOH A 18 3218 75 HOH HOH . 
F 4 HOH A 19 3219 130 HOH HOH . 
F 4 HOH A 20 3220 15 HOH HOH . 
F 4 HOH A 21 3221 71 HOH HOH . 
F 4 HOH A 22 3222 50 HOH HOH . 
F 4 HOH A 23 3223 99 HOH HOH . 
F 4 HOH A 24 3224 10 HOH HOH . 
F 4 HOH A 25 3225 107 HOH HOH . 
F 4 HOH A 26 3226 113 HOH HOH . 
F 4 HOH A 27 3227 98 HOH HOH . 
F 4 HOH A 28 3228 116 HOH HOH . 
F 4 HOH A 29 3229 103 HOH HOH . 
F 4 HOH A 30 3230 38 HOH HOH . 
F 4 HOH A 31 3231 27 HOH HOH . 
F 4 HOH A 32 3232 36 HOH HOH . 
F 4 HOH A 33 3233 39 HOH HOH . 
F 4 HOH A 34 3234 22 HOH HOH . 
F 4 HOH A 35 3235 2 HOH HOH . 
F 4 HOH A 36 3236 31 HOH HOH . 
F 4 HOH A 37 3237 81 HOH HOH . 
F 4 HOH A 38 3238 7 HOH HOH . 
F 4 HOH A 39 3239 76 HOH HOH . 
F 4 HOH A 40 3240 87 HOH HOH . 
F 4 HOH A 41 3241 54 HOH HOH . 
F 4 HOH A 42 3242 24 HOH HOH . 
F 4 HOH A 43 3243 93 HOH HOH . 
F 4 HOH A 44 3244 154 HOH HOH . 
F 4 HOH A 45 3245 109 HOH HOH . 
F 4 HOH A 46 3246 47 HOH HOH . 
F 4 HOH A 47 3247 60 HOH HOH . 
F 4 HOH A 48 3248 88 HOH HOH . 
F 4 HOH A 49 3249 20 HOH HOH . 
F 4 HOH A 50 3250 132 HOH HOH . 
F 4 HOH A 51 3251 37 HOH HOH . 
F 4 HOH A 52 3252 56 HOH HOH . 
F 4 HOH A 53 3253 125 HOH HOH . 
F 4 HOH A 54 3254 147 HOH HOH . 
F 4 HOH A 55 3255 137 HOH HOH . 
F 4 HOH A 56 3256 80 HOH HOH . 
F 4 HOH A 57 3257 100 HOH HOH . 
F 4 HOH A 58 3258 121 HOH HOH . 
F 4 HOH A 59 3259 135 HOH HOH . 
F 4 HOH A 60 3260 45 HOH HOH . 
F 4 HOH A 61 3261 42 HOH HOH . 
F 4 HOH A 62 3262 124 HOH HOH . 
F 4 HOH A 63 3263 89 HOH HOH . 
F 4 HOH A 64 3264 57 HOH HOH . 
F 4 HOH A 65 3265 78 HOH HOH . 
F 4 HOH A 66 3266 102 HOH HOH . 
F 4 HOH A 67 3267 133 HOH HOH . 
F 4 HOH A 68 3268 16 HOH HOH . 
F 4 HOH A 69 3269 146 HOH HOH . 
F 4 HOH A 70 3270 51 HOH HOH . 
F 4 HOH A 71 3271 72 HOH HOH . 
F 4 HOH A 72 3272 149 HOH HOH . 
F 4 HOH A 73 3273 127 HOH HOH . 
F 4 HOH A 74 3274 140 HOH HOH . 
F 4 HOH A 75 3275 134 HOH HOH . 
G 4 HOH B 1 3201 145 HOH HOH . 
G 4 HOH B 2 3202 108 HOH HOH . 
G 4 HOH B 3 3203 12 HOH HOH . 
G 4 HOH B 4 3204 120 HOH HOH . 
G 4 HOH B 5 3205 25 HOH HOH . 
G 4 HOH B 6 3206 101 HOH HOH . 
G 4 HOH B 7 3207 9 HOH HOH . 
G 4 HOH B 8 3208 96 HOH HOH . 
G 4 HOH B 9 3209 46 HOH HOH . 
G 4 HOH B 10 3210 1 HOH HOH . 
G 4 HOH B 11 3211 77 HOH HOH . 
G 4 HOH B 12 3212 150 HOH HOH . 
G 4 HOH B 13 3213 91 HOH HOH . 
G 4 HOH B 14 3214 52 HOH HOH . 
G 4 HOH B 15 3215 23 HOH HOH . 
G 4 HOH B 16 3216 32 HOH HOH . 
G 4 HOH B 17 3217 61 HOH HOH . 
G 4 HOH B 18 3218 74 HOH HOH . 
G 4 HOH B 19 3219 141 HOH HOH . 
G 4 HOH B 20 3220 67 HOH HOH . 
G 4 HOH B 21 3221 148 HOH HOH . 
G 4 HOH B 22 3222 44 HOH HOH . 
G 4 HOH B 23 3223 13 HOH HOH . 
G 4 HOH B 24 3224 64 HOH HOH . 
G 4 HOH B 25 3225 86 HOH HOH . 
G 4 HOH B 26 3226 92 HOH HOH . 
G 4 HOH B 27 3227 117 HOH HOH . 
G 4 HOH B 28 3228 40 HOH HOH . 
G 4 HOH B 29 3229 83 HOH HOH . 
G 4 HOH B 30 3230 17 HOH HOH . 
G 4 HOH B 31 3231 69 HOH HOH . 
G 4 HOH B 32 3232 122 HOH HOH . 
G 4 HOH B 33 3233 131 HOH HOH . 
G 4 HOH B 34 3234 29 HOH HOH . 
G 4 HOH B 35 3235 19 HOH HOH . 
G 4 HOH B 36 3236 6 HOH HOH . 
G 4 HOH B 37 3237 111 HOH HOH . 
G 4 HOH B 38 3238 58 HOH HOH . 
G 4 HOH B 39 3239 118 HOH HOH . 
G 4 HOH B 40 3240 144 HOH HOH . 
G 4 HOH B 41 3241 90 HOH HOH . 
G 4 HOH B 42 3242 35 HOH HOH . 
G 4 HOH B 43 3243 18 HOH HOH . 
G 4 HOH B 44 3244 82 HOH HOH . 
G 4 HOH B 45 3245 106 HOH HOH . 
G 4 HOH B 46 3246 114 HOH HOH . 
G 4 HOH B 47 3247 28 HOH HOH . 
G 4 HOH B 48 3248 97 HOH HOH . 
G 4 HOH B 49 3249 4 HOH HOH . 
G 4 HOH B 50 3250 95 HOH HOH . 
G 4 HOH B 51 3251 8 HOH HOH . 
G 4 HOH B 52 3252 21 HOH HOH . 
G 4 HOH B 53 3253 43 HOH HOH . 
G 4 HOH B 54 3254 34 HOH HOH . 
G 4 HOH B 55 3255 55 HOH HOH . 
G 4 HOH B 56 3256 48 HOH HOH . 
G 4 HOH B 57 3257 68 HOH HOH . 
G 4 HOH B 58 3258 11 HOH HOH . 
G 4 HOH B 59 3259 84 HOH HOH . 
G 4 HOH B 60 3260 79 HOH HOH . 
G 4 HOH B 61 3261 136 HOH HOH . 
G 4 HOH B 62 3262 128 HOH HOH . 
G 4 HOH B 63 3263 139 HOH HOH . 
G 4 HOH B 64 3264 85 HOH HOH . 
G 4 HOH B 65 3265 142 HOH HOH . 
G 4 HOH B 66 3266 105 HOH HOH . 
G 4 HOH B 67 3267 152 HOH HOH . 
G 4 HOH B 68 3268 65 HOH HOH . 
G 4 HOH B 69 3269 126 HOH HOH . 
G 4 HOH B 70 3270 62 HOH HOH . 
G 4 HOH B 71 3271 49 HOH HOH . 
G 4 HOH B 72 3272 123 HOH HOH . 
G 4 HOH B 73 3273 115 HOH HOH . 
G 4 HOH B 74 3274 66 HOH HOH . 
G 4 HOH B 75 3275 138 HOH HOH . 
G 4 HOH B 76 3276 119 HOH HOH . 
G 4 HOH B 77 3277 33 HOH HOH . 
G 4 HOH B 78 3278 151 HOH HOH . 
G 4 HOH B 79 3279 63 HOH HOH . 
G 4 HOH B 80 3280 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 7.602 17.227 -16.954 1 36.31 ? C1 EDO 3102 A 1 
HETATM 2 O O1 EDO . . . D 3 7.878 16.173 -16.029 1 45.19 ? O1 EDO 3102 A 1 
HETATM 3 C C2 EDO . . . D 3 8.429 17.011 -18.209 1 34.44 ? C2 EDO 3102 A 1 
HETATM 4 O O2 EDO . . . D 3 9.786 16.766 -17.832 1 35.98 ? O2 EDO 3102 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#