data_7KDZ
#
_model_server_result.job_id            CW1HIQwcxR8VmyBavTgU3g 
_model_server_result.datetime_utc      '2025-01-10 20:05:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kdz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":3101}' 
#
_entry.id    7KDZ 
#
_exptl.entry_id    7KDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KDZ 
_cell.length_a            42.67 
_cell.length_b            42.67 
_cell.length_c            126.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7KDZ 
_atom_sites.fract_transf_matrix[1][1]    0.023436 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 3101 3101 EDO EDO . 
C 3 WCS A 1 3102 1 WCS TP2 . 
D 4 HOH A 1 3201 51 HOH HOH . 
D 4 HOH A 2 3202 54 HOH HOH . 
D 4 HOH A 3 3203 4 HOH HOH . 
D 4 HOH A 4 3204 10 HOH HOH . 
D 4 HOH A 5 3205 58 HOH HOH . 
D 4 HOH A 6 3206 48 HOH HOH . 
D 4 HOH A 7 3207 63 HOH HOH . 
D 4 HOH A 8 3208 11 HOH HOH . 
D 4 HOH A 9 3209 21 HOH HOH . 
D 4 HOH A 10 3210 78 HOH HOH . 
D 4 HOH A 11 3211 8 HOH HOH . 
D 4 HOH A 12 3212 37 HOH HOH . 
D 4 HOH A 13 3213 25 HOH HOH . 
D 4 HOH A 14 3214 49 HOH HOH . 
D 4 HOH A 15 3215 14 HOH HOH . 
D 4 HOH A 16 3216 30 HOH HOH . 
D 4 HOH A 17 3217 60 HOH HOH . 
D 4 HOH A 18 3218 43 HOH HOH . 
D 4 HOH A 19 3219 5 HOH HOH . 
D 4 HOH A 20 3220 35 HOH HOH . 
D 4 HOH A 21 3221 2 HOH HOH . 
D 4 HOH A 22 3222 50 HOH HOH . 
D 4 HOH A 23 3223 13 HOH HOH . 
D 4 HOH A 24 3224 23 HOH HOH . 
D 4 HOH A 25 3225 59 HOH HOH . 
D 4 HOH A 26 3226 9 HOH HOH . 
D 4 HOH A 27 3227 12 HOH HOH . 
D 4 HOH A 28 3228 15 HOH HOH . 
D 4 HOH A 29 3229 7 HOH HOH . 
D 4 HOH A 30 3230 6 HOH HOH . 
D 4 HOH A 31 3231 62 HOH HOH . 
D 4 HOH A 32 3232 56 HOH HOH . 
D 4 HOH A 33 3233 44 HOH HOH . 
D 4 HOH A 34 3234 17 HOH HOH . 
D 4 HOH A 35 3235 61 HOH HOH . 
D 4 HOH A 36 3236 20 HOH HOH . 
D 4 HOH A 37 3237 19 HOH HOH . 
D 4 HOH A 38 3238 3 HOH HOH . 
D 4 HOH A 39 3239 31 HOH HOH . 
D 4 HOH A 40 3240 1 HOH HOH . 
D 4 HOH A 41 3241 34 HOH HOH . 
D 4 HOH A 42 3242 16 HOH HOH . 
D 4 HOH A 43 3243 80 HOH HOH . 
D 4 HOH A 44 3244 57 HOH HOH . 
D 4 HOH A 45 3245 26 HOH HOH . 
D 4 HOH A 46 3246 27 HOH HOH . 
D 4 HOH A 47 3247 32 HOH HOH . 
D 4 HOH A 48 3248 70 HOH HOH . 
D 4 HOH A 49 3249 71 HOH HOH . 
D 4 HOH A 50 3250 41 HOH HOH . 
D 4 HOH A 51 3251 65 HOH HOH . 
D 4 HOH A 52 3252 24 HOH HOH . 
D 4 HOH A 53 3253 69 HOH HOH . 
D 4 HOH A 54 3254 47 HOH HOH . 
D 4 HOH A 55 3255 29 HOH HOH . 
D 4 HOH A 56 3256 45 HOH HOH . 
D 4 HOH A 57 3257 39 HOH HOH . 
D 4 HOH A 58 3258 68 HOH HOH . 
D 4 HOH A 59 3259 76 HOH HOH . 
D 4 HOH A 60 3260 72 HOH HOH . 
D 4 HOH A 61 3261 64 HOH HOH . 
D 4 HOH A 62 3262 40 HOH HOH . 
D 4 HOH A 63 3263 28 HOH HOH . 
D 4 HOH A 64 3264 73 HOH HOH . 
D 4 HOH A 65 3265 46 HOH HOH . 
D 4 HOH A 66 3266 36 HOH HOH . 
D 4 HOH A 67 3267 42 HOH HOH . 
D 4 HOH A 68 3268 79 HOH HOH . 
D 4 HOH A 69 3269 53 HOH HOH . 
D 4 HOH A 70 3270 74 HOH HOH . 
D 4 HOH A 71 3271 38 HOH HOH . 
D 4 HOH A 72 3272 33 HOH HOH . 
D 4 HOH A 73 3273 77 HOH HOH . 
D 4 HOH A 74 3274 67 HOH HOH . 
D 4 HOH A 75 3275 75 HOH HOH . 
D 4 HOH A 76 3276 66 HOH HOH . 
D 4 HOH A 77 3277 55 HOH HOH . 
D 4 HOH A 78 3278 52 HOH HOH . 
D 4 HOH A 79 3279 18 HOH HOH . 
D 4 HOH A 80 3280 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 19.763 -4.82 156.033 1 42.98 ? C1 EDO 3101 A 1 
HETATM 2 O O1 EDO . . . B 2 20.497 -5.654 155.128 1 45.74 ? O1 EDO 3101 A 1 
HETATM 3 C C2 EDO . . . B 2 19.943 -3.361 155.631 1 42.08 ? C2 EDO 3101 A 1 
HETATM 4 O O2 EDO . . . B 2 20.293 -3.285 154.244 1 47.28 ? O2 EDO 3101 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#