data_7KDZ
#
_model_server_result.job_id            sTn12pB2JqLbtao7SCMTuQ 
_model_server_result.datetime_utc      '2025-01-10 19:55:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kdz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3102}' 
#
_entry.id    7KDZ 
#
_exptl.entry_id    7KDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.577 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-{4-[3-(dimethylamino)propoxy]phenyl}-2-(methylsulfonyl)-N-[3-(1H-pyrazol-1-yl)propyl]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KDZ 
_cell.length_a            42.67 
_cell.length_b            42.67 
_cell.length_c            126.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H30 N6 O3 S' 
_chem_comp.formula_weight    458.577 
_chem_comp.id                WCS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-{4-[3-(dimethylamino)propoxy]phenyl}-2-(methylsulfonyl)-N-[3-(1H-pyrazol-1-yl)propyl]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C32 N02 WCS sing 385 n n 
C01 N02 WCS sing 386 n n 
N02 C03 WCS sing 387 n n 
C03 C04 WCS sing 388 n n 
C04 C05 WCS sing 389 n n 
N28 C27 WCS doub 390 n y 
N28 N24 WCS sing 391 n y 
C27 C26 WCS sing 392 n y 
C05 O06 WCS sing 393 n n 
N24 C23 WCS sing 394 n n 
N24 C25 WCS sing 395 n y 
C23 C22 WCS sing 396 n n 
C26 C25 WCS doub 397 n y 
O06 C07 WCS sing 398 n n 
C31 C07 WCS doub 399 n y 
C31 C30 WCS sing 400 n y 
C22 C21 WCS sing 401 n n 
C07 C08 WCS sing 402 n y 
C30 C10 WCS doub 403 n y 
C21 N20 WCS sing 404 n n 
C08 C09 WCS doub 405 n y 
C10 C09 WCS sing 406 n y 
C10 C11 WCS sing 407 n n 
C29 C11 WCS doub 408 n y 
C29 C19 WCS sing 409 n y 
C11 N12 WCS sing 410 n y 
N20 C19 WCS sing 411 n n 
C19 N18 WCS doub 412 n y 
N12 C13 WCS doub 413 n y 
N18 C13 WCS sing 414 n y 
C13 S14 WCS sing 415 n n 
C15 S14 WCS sing 416 n n 
S14 O17 WCS doub 417 n n 
S14 O16 WCS doub 418 n n 
C15 H1 WCS sing 419 n n 
C15 H2 WCS sing 420 n n 
C15 H3 WCS sing 421 n n 
C01 H4 WCS sing 422 n n 
C01 H5 WCS sing 423 n n 
C01 H6 WCS sing 424 n n 
C03 H7 WCS sing 425 n n 
C03 H8 WCS sing 426 n n 
C04 H9 WCS sing 427 n n 
C04 H10 WCS sing 428 n n 
C05 H11 WCS sing 429 n n 
C05 H12 WCS sing 430 n n 
C08 H13 WCS sing 431 n n 
C09 H14 WCS sing 432 n n 
C21 H15 WCS sing 433 n n 
C21 H16 WCS sing 434 n n 
C22 H17 WCS sing 435 n n 
C22 H18 WCS sing 436 n n 
C23 H19 WCS sing 437 n n 
C23 H20 WCS sing 438 n n 
C25 H21 WCS sing 439 n n 
C26 H22 WCS sing 440 n n 
C27 H23 WCS sing 441 n n 
C29 H24 WCS sing 442 n n 
C30 H25 WCS sing 443 n n 
C31 H26 WCS sing 444 n n 
C32 H27 WCS sing 445 n n 
C32 H28 WCS sing 446 n n 
C32 H29 WCS sing 447 n n 
N20 H31 WCS sing 448 n n 
#
_atom_sites.entry_id                     7KDZ 
_atom_sites.fract_transf_matrix[1][1]    0.023436 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 3101 3101 EDO EDO . 
C 3 WCS A 1 3102 1 WCS TP2 . 
D 4 HOH A 1 3201 51 HOH HOH . 
D 4 HOH A 2 3202 54 HOH HOH . 
D 4 HOH A 3 3203 4 HOH HOH . 
D 4 HOH A 4 3204 10 HOH HOH . 
D 4 HOH A 5 3205 58 HOH HOH . 
D 4 HOH A 6 3206 48 HOH HOH . 
D 4 HOH A 7 3207 63 HOH HOH . 
D 4 HOH A 8 3208 11 HOH HOH . 
D 4 HOH A 9 3209 21 HOH HOH . 
D 4 HOH A 10 3210 78 HOH HOH . 
D 4 HOH A 11 3211 8 HOH HOH . 
D 4 HOH A 12 3212 37 HOH HOH . 
D 4 HOH A 13 3213 25 HOH HOH . 
D 4 HOH A 14 3214 49 HOH HOH . 
D 4 HOH A 15 3215 14 HOH HOH . 
D 4 HOH A 16 3216 30 HOH HOH . 
D 4 HOH A 17 3217 60 HOH HOH . 
D 4 HOH A 18 3218 43 HOH HOH . 
D 4 HOH A 19 3219 5 HOH HOH . 
D 4 HOH A 20 3220 35 HOH HOH . 
D 4 HOH A 21 3221 2 HOH HOH . 
D 4 HOH A 22 3222 50 HOH HOH . 
D 4 HOH A 23 3223 13 HOH HOH . 
D 4 HOH A 24 3224 23 HOH HOH . 
D 4 HOH A 25 3225 59 HOH HOH . 
D 4 HOH A 26 3226 9 HOH HOH . 
D 4 HOH A 27 3227 12 HOH HOH . 
D 4 HOH A 28 3228 15 HOH HOH . 
D 4 HOH A 29 3229 7 HOH HOH . 
D 4 HOH A 30 3230 6 HOH HOH . 
D 4 HOH A 31 3231 62 HOH HOH . 
D 4 HOH A 32 3232 56 HOH HOH . 
D 4 HOH A 33 3233 44 HOH HOH . 
D 4 HOH A 34 3234 17 HOH HOH . 
D 4 HOH A 35 3235 61 HOH HOH . 
D 4 HOH A 36 3236 20 HOH HOH . 
D 4 HOH A 37 3237 19 HOH HOH . 
D 4 HOH A 38 3238 3 HOH HOH . 
D 4 HOH A 39 3239 31 HOH HOH . 
D 4 HOH A 40 3240 1 HOH HOH . 
D 4 HOH A 41 3241 34 HOH HOH . 
D 4 HOH A 42 3242 16 HOH HOH . 
D 4 HOH A 43 3243 80 HOH HOH . 
D 4 HOH A 44 3244 57 HOH HOH . 
D 4 HOH A 45 3245 26 HOH HOH . 
D 4 HOH A 46 3246 27 HOH HOH . 
D 4 HOH A 47 3247 32 HOH HOH . 
D 4 HOH A 48 3248 70 HOH HOH . 
D 4 HOH A 49 3249 71 HOH HOH . 
D 4 HOH A 50 3250 41 HOH HOH . 
D 4 HOH A 51 3251 65 HOH HOH . 
D 4 HOH A 52 3252 24 HOH HOH . 
D 4 HOH A 53 3253 69 HOH HOH . 
D 4 HOH A 54 3254 47 HOH HOH . 
D 4 HOH A 55 3255 29 HOH HOH . 
D 4 HOH A 56 3256 45 HOH HOH . 
D 4 HOH A 57 3257 39 HOH HOH . 
D 4 HOH A 58 3258 68 HOH HOH . 
D 4 HOH A 59 3259 76 HOH HOH . 
D 4 HOH A 60 3260 72 HOH HOH . 
D 4 HOH A 61 3261 64 HOH HOH . 
D 4 HOH A 62 3262 40 HOH HOH . 
D 4 HOH A 63 3263 28 HOH HOH . 
D 4 HOH A 64 3264 73 HOH HOH . 
D 4 HOH A 65 3265 46 HOH HOH . 
D 4 HOH A 66 3266 36 HOH HOH . 
D 4 HOH A 67 3267 42 HOH HOH . 
D 4 HOH A 68 3268 79 HOH HOH . 
D 4 HOH A 69 3269 53 HOH HOH . 
D 4 HOH A 70 3270 74 HOH HOH . 
D 4 HOH A 71 3271 38 HOH HOH . 
D 4 HOH A 72 3272 33 HOH HOH . 
D 4 HOH A 73 3273 77 HOH HOH . 
D 4 HOH A 74 3274 67 HOH HOH . 
D 4 HOH A 75 3275 75 HOH HOH . 
D 4 HOH A 76 3276 66 HOH HOH . 
D 4 HOH A 77 3277 55 HOH HOH . 
D 4 HOH A 78 3278 52 HOH HOH . 
D 4 HOH A 79 3279 18 HOH HOH . 
D 4 HOH A 80 3280 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 WCS . . . C 3 16.983 9.667 127.607 1 17.88 ? C10 WCS 3102 A 1 
HETATM 2 C C11 WCS . . . C 3 18.142 10.139 128.335 1 19.08 ? C11 WCS 3102 A 1 
HETATM 3 C C13 WCS . . . C 3 19.482 9.962 130.184 1 17.8 ? C13 WCS 3102 A 1 
HETATM 4 C C15 WCS . . . C 3 19.288 7.397 131.577 1 19.89 ? C15 WCS 3102 A 1 
HETATM 5 O O16 WCS . . . C 3 19.021 9.789 132.763 1 21.62 ? O16 WCS 3102 A 1 
HETATM 6 O O17 WCS . . . C 3 21.273 9.265 132.1 1 20.2 ? O17 WCS 3102 A 1 
HETATM 7 C C19 WCS . . . C 3 20.02 11.595 128.767 1 18.25 ? C19 WCS 3102 A 1 
HETATM 8 C C01 WCS . . . C 3 13.742 4.918 122.419 1 36.64 ? C01 WCS 3102 A 1 
HETATM 9 C C03 WCS . . . C 3 12.474 6.458 123.739 1 29.77 ? C03 WCS 3102 A 1 
HETATM 10 C C04 WCS . . . C 3 12.019 7.913 123.927 1 23.12 ? C04 WCS 3102 A 1 
HETATM 11 C C05 WCS . . . C 3 13.026 8.832 124.622 1 23.03 ? C05 WCS 3102 A 1 
HETATM 12 C C07 WCS . . . C 3 14.699 8.697 126.349 1 21.52 ? C07 WCS 3102 A 1 
HETATM 13 C C08 WCS . . . C 3 15.253 8.013 127.416 1 21.5 ? C08 WCS 3102 A 1 
HETATM 14 C C09 WCS . . . C 3 16.386 8.496 128.056 1 20.54 ? C09 WCS 3102 A 1 
HETATM 15 C C21 WCS . . . C 3 20.508 13.662 127.343 1 20.71 ? C21 WCS 3102 A 1 
HETATM 16 C C22 WCS . . . C 3 21.074 13.146 125.993 1 22.03 ? C22 WCS 3102 A 1 
HETATM 17 C C23 WCS . . . C 3 20.648 14.099 124.857 1 20.56 ? C23 WCS 3102 A 1 
HETATM 18 C C25 WCS . . . C 3 18.501 15.315 125.276 1 26.45 ? C25 WCS 3102 A 1 
HETATM 19 C C26 WCS . . . C 3 17.177 15.069 125.09 1 26.22 ? C26 WCS 3102 A 1 
HETATM 20 C C27 WCS . . . C 3 17.041 13.812 124.516 1 25.66 ? C27 WCS 3102 A 1 
HETATM 21 C C29 WCS . . . C 3 18.932 11.197 127.938 1 17.19 ? C29 WCS 3102 A 1 
HETATM 22 C C30 WCS . . . C 3 16.413 10.375 126.548 1 19.88 ? C30 WCS 3102 A 1 
HETATM 23 C C31 WCS . . . C 3 15.275 9.888 125.899 1 21.25 ? C31 WCS 3102 A 1 
HETATM 24 C C32 WCS . . . C 3 13.132 7.031 121.473 1 34.64 ? C32 WCS 3102 A 1 
HETATM 25 N N02 WCS . . . C 3 13.523 6.34 122.707 1 35.18 ? N02 WCS 3102 A 1 
HETATM 26 N N12 WCS . . . C 3 18.445 9.532 129.477 1 17.18 ? N12 WCS 3102 A 1 
HETATM 27 N N18 WCS . . . C 3 20.272 10.955 129.863 1 17.45 ? N18 WCS 3102 A 1 
HETATM 28 N N20 WCS . . . C 3 20.926 12.708 128.426 1 18.95 ? N20 WCS 3102 A 1 
HETATM 29 N N24 WCS . . . C 3 19.17 14.236 124.838 1 24.2 ? N24 WCS 3102 A 1 
HETATM 30 N N28 WCS . . . C 3 18.291 13.306 124.367 1 26.91 ? N28 WCS 3102 A 1 
HETATM 31 O O06 WCS . . . C 3 13.556 8.138 125.758 1 21.55 ? O06 WCS 3102 A 1 
HETATM 32 S S14 WCS . . . C 3 19.855 9.146 131.741 1 19.61 ? S14 WCS 3102 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#