data_7KE2 # _model_server_result.job_id JDtTsdEgHYUxOVBuNtJezQ _model_server_result.datetime_utc '2024-11-16 04:52:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ke2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 7KE2 # _exptl.entry_id 7KE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.187 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-hydroxy-2-methyl[1,3]thiazolo[4,5-d]pyrimidine-5,7(4H,6H)-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KE2 _cell.length_a 78.446 _cell.length_b 94.063 _cell.length_c 97.203 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 190 B ASP 190 1_555 C MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 A OD1 ASP 190 B ASP 190 1_555 D MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc3 A OE2 GLU 194 B GLU 194 1_555 C MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 C MG MG . B MG 401 1_555 I O HOH . B HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 C MG MG . B MG 401 1_555 I O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 C MG MG . B MG 401 1_555 F O12 WBY . A WBY 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 C MG MG . B MG 401 1_555 F O13 WBY . A WBY 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 D MG MG . B MG 402 1_555 I O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc9 D MG MG . B MG 402 1_555 F O01 WBY . A WBY 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc10 D MG MG . B MG 402 1_555 F O13 WBY . A WBY 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 D MG MG . B MG 402 1_555 J O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 D MG MG . B MG 402 1_555 J O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc13 I O HOH . B HOH 501 1_555 H MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 B OD2 ASP 190 A ASP 190 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc15 B OD1 ASP 190 A ASP 190 1_555 H MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc16 B OE2 GLU 194 A GLU 194 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc17 E O12 WBY . A WBY 401 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc18 E O13 WBY . A WBY 401 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc19 E O01 WBY . A WBY 401 1_555 H MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 E O13 WBY . A WBY 401 1_555 H MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc21 G MG MG . A MG 403 1_555 J O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc22 G MG MG . A MG 403 1_555 J O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc23 H MG MG . A MG 404 1_555 J O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc24 H MG MG . A MG 404 1_555 J O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C6 H5 N3 O3 S' _chem_comp.formula_weight 199.187 _chem_comp.id WBY _chem_comp.mon_nstd_flag . _chem_comp.name 6-hydroxy-2-methyl[1,3]thiazolo[4,5-d]pyrimidine-5,7(4H,6H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 N03 WBY sing 348 n n O12 C04 WBY doub 349 n n N03 C04 WBY sing 350 n n N03 C02 WBY sing 351 n n C04 N05 WBY sing 352 n n O01 C02 WBY doub 353 n n C02 C07 WBY sing 354 n n N05 C06 WBY sing 355 n n C07 C06 WBY doub 356 n y C07 S08 WBY sing 357 n y C06 N11 WBY sing 358 n y N11 C09 WBY doub 359 n y S08 C09 WBY sing 360 n y C09 C10 WBY sing 361 n n C10 H1 WBY sing 362 n n C10 H2 WBY sing 363 n n C10 H3 WBY sing 364 n n N05 H4 WBY sing 365 n n O13 H5 WBY sing 366 n n # _atom_sites.entry_id 7KE2 _atom_sites.fract_transf_matrix[1][1] 0.012748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG B 1 401 3 MG MG . D 2 MG B 1 402 4 MG MG . E 3 WBY A 1 401 401 WBY LIG . F 3 WBY A 1 402 401 WBY LIG . G 2 MG A 1 403 1 MG MG . H 2 MG A 1 404 2 MG MG . I 4 HOH B 1 501 14 HOH HOH . I 4 HOH B 2 502 3 HOH HOH . I 4 HOH B 3 503 32 HOH HOH . I 4 HOH B 4 504 5 HOH HOH . I 4 HOH B 5 505 13 HOH HOH . I 4 HOH B 6 506 46 HOH HOH . I 4 HOH B 7 507 38 HOH HOH . I 4 HOH B 8 508 10 HOH HOH . I 4 HOH B 9 509 36 HOH HOH . I 4 HOH B 10 510 18 HOH HOH . I 4 HOH B 11 511 4 HOH HOH . I 4 HOH B 12 512 12 HOH HOH . I 4 HOH B 13 513 35 HOH HOH . I 4 HOH B 14 514 23 HOH HOH . I 4 HOH B 15 515 33 HOH HOH . I 4 HOH B 16 516 27 HOH HOH . I 4 HOH B 17 517 43 HOH HOH . I 4 HOH B 18 518 26 HOH HOH . I 4 HOH B 19 519 25 HOH HOH . J 4 HOH A 1 501 22 HOH HOH . J 4 HOH A 2 502 21 HOH HOH . J 4 HOH A 3 503 39 HOH HOH . J 4 HOH A 4 504 8 HOH HOH . J 4 HOH A 5 505 20 HOH HOH . J 4 HOH A 6 506 30 HOH HOH . J 4 HOH A 7 507 7 HOH HOH . J 4 HOH A 8 508 19 HOH HOH . J 4 HOH A 9 509 42 HOH HOH . J 4 HOH A 10 510 9 HOH HOH . J 4 HOH A 11 511 31 HOH HOH . J 4 HOH A 12 512 2 HOH HOH . J 4 HOH A 13 513 17 HOH HOH . J 4 HOH A 14 514 29 HOH HOH . J 4 HOH A 15 515 45 HOH HOH . J 4 HOH A 16 516 11 HOH HOH . J 4 HOH A 17 517 41 HOH HOH . J 4 HOH A 18 518 15 HOH HOH . J 4 HOH A 19 519 6 HOH HOH . J 4 HOH A 20 520 28 HOH HOH . J 4 HOH A 21 521 40 HOH HOH . J 4 HOH A 22 522 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 WBY . . . F 3 13.298 -1.467 -20.544 1 35.91 ? C10 WBY 402 A 1 HETATM 2 C C02 WBY . . . F 3 13.673 -3.135 -25.728 1 42.71 ? C02 WBY 402 A 1 HETATM 3 C C04 WBY . . . F 3 13.708 -0.922 -26.897 1 42.61 ? C04 WBY 402 A 1 HETATM 4 C C06 WBY . . . F 3 13.541 -1.012 -24.354 1 39.69 ? C06 WBY 402 A 1 HETATM 5 C C07 WBY . . . F 3 13.571 -2.419 -24.391 1 43.14 ? C07 WBY 402 A 1 HETATM 6 C C09 WBY . . . F 3 13.401 -1.605 -22.061 1 41.51 ? C09 WBY 402 A 1 HETATM 7 N N03 WBY . . . F 3 13.739 -2.372 -26.942 1 43.85 ? N03 WBY 402 A 1 HETATM 8 N N05 WBY . . . F 3 13.609 -0.231 -25.609 1 40.39 ? N05 WBY 402 A 1 HETATM 9 N N11 WBY . . . F 3 13.439 -0.527 -22.948 1 38.33 ? N11 WBY 402 A 1 HETATM 10 O O01 WBY . . . F 3 13.7 -4.319 -25.772 1 41.87 ? O01 WBY 402 A 1 HETATM 11 O O12 WBY . . . F 3 13.761 -0.297 -27.901 1 44.79 ? O12 WBY 402 A 1 HETATM 12 O O13 WBY . . . F 3 13.834 -3.028 -28.178 1 45.22 ? O13 WBY 402 A 1 HETATM 13 S S08 WBY . . . F 3 13.483 -3.018 -22.893 1 38.49 ? S08 WBY 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 13 #