data_7KEK # _model_server_result.job_id ME4IPgGSyPjxe4fwpDoptQ _model_server_result.datetime_utc '2025-09-08 19:34:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":4705}' # _entry.id 7KEK # _exptl.entry_id 7KEK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KEK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptadecameric _pdbx_struct_assembly.oligomeric_count 17 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 20 U N N ? 20 V N N ? 20 W N N ? 20 Y N N ? 20 AA N N ? 20 BA N N ? 20 EA N N ? 20 FA N N ? 20 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 68 N CYS 68 1_555 J SG CYS 101 O CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A OG SER 2164 A SER 2164 1_555 U MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc2 A OE1 GLU 2273 A GLU 2273 1_555 U MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc3 A OG1 THR 2500 A THR 2500 1_555 V MG MG . A MG 4705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 R O1B ADP . A ADP 4701 1_555 V MG MG . A MG 4705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 R O3B ADP . A ADP 4701 1_555 V MG MG . A MG 4705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc6 S O1G ATP . A ATP 4702 1_555 U MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc7 S O3G ATP . A ATP 4702 1_555 U MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc8 S O1B ATP . A ATP 4702 1_555 U MG MG . A MG 4704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc9 B OG SER 1691 C SER 1691 1_555 Y MG MG . C MG 4202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc10 B OG1 THR 2017 C THR 2017 1_555 AA MG MG . C MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc11 B OD2 ASP 2104 C ASP 2104 1_555 Y MG MG . C MG 4202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc12 B O GLY 2362 C GLY 2362 1_555 BA MG MG . C MG 4205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc13 X O3G ATP . C ATP 4201 1_555 Y MG MG . C MG 4202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc14 Z O2B ADP . C ADP 4203 1_555 AA MG MG . C MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc15 Z O1A ADP . C ADP 4203 1_555 AA MG MG . C MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc16 Z O3A ADP . C ADP 4203 1_555 AA MG MG . C MG 4204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc17 BA MG MG . C MG 4205 1_555 CA O1B ADP . C ADP 4206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc18 BA MG MG . C MG 4205 1_555 CA O1A ADP . C ADP 4206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc19 BA MG MG . C MG 4205 1_555 CA O3A ADP . C ADP 4206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc20 BA MG MG . C MG 4205 1_555 CA O2A ADP . C ADP 4206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc21 D OE1 GLU 2304 B GLU 2304 1_555 EA MG MG . B MG 4702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc22 D OG1 THR 2545 B THR 2545 1_555 FA MG MG . B MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc23 DA O1G ATP . B ATP 4701 1_555 EA MG MG . B MG 4702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc24 DA O3B ATP . B ATP 4701 1_555 EA MG MG . B MG 4702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc25 DA O3A ATP . B ATP 4701 1_555 EA MG MG . B MG 4702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc26 FA MG MG . B MG 4703 1_555 HA O1B ADP . B ADP 4705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc27 GA MG MG . B MG 4704 1_555 IA O3B ADP . B ADP 4706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KEK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code R 18 ADP A 1 4701 4701 ADP ADP . S 19 ATP A 1 4702 4801 ATP ATP . T 18 ADP A 1 4703 4901 ADP ADP . U 20 MG A 1 4704 5001 MG MG . V 20 MG A 1 4705 5002 MG MG . W 20 MG A 1 4706 5101 MG MG . X 19 ATP C 1 4201 4201 ATP ATP . Y 20 MG C 1 4202 4301 MG MG . Z 18 ADP C 1 4203 4401 ADP ADP . AA 20 MG C 1 4204 4501 MG MG . BA 20 MG C 1 4205 4701 MG MG . CA 18 ADP C 1 4206 4801 ADP ADP . DA 19 ATP B 1 4701 4701 ATP ATP . EA 20 MG B 1 4702 4801 MG MG . FA 20 MG B 1 4703 5101 MG MG . GA 20 MG B 1 4704 5401 MG MG . HA 18 ADP B 1 4705 5501 ADP ADP . IA 18 ADP B 1 4706 5601 ADP ADP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 20 _atom_site.Cartn_x 488.814 _atom_site.Cartn_y 476.93 _atom_site.Cartn_z 567.474 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 127.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 4705 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 150 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #