data_7KEM # _model_server_result.job_id jYU9P3umVEAe3XIkifegGw _model_server_result.datetime_utc '2025-08-31 04:14:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 7KEM # _exptl.entry_id 7KEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KEM _cell.length_a 117.528 _cell.length_b 121.051 _cell.length_c 122.699 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G CD DGL . A DGL 505 1_555 H N 6CL . B 6CL 501 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.336 ? covale ? covale2 G CD DGL . A DGL 505 1_555 H N 6CL . B 6CL 501 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.226 ? metalc ? metalc1 A SD MET 157 A MET 157 1_555 D PT1 0JC . A 0JC 502 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.736 ? metalc ? metalc2 A ND1 HIS 347 A HIS 347 1_555 C PT1 0JC . A 0JC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc3 B SD MET 153 B MET 153 1_555 M PT1 0JC . B 0JC 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc4 B ND1 HIS 347 B HIS 347 1_555 J PT1 0JC . B 0JC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KEM _atom_sites.fract_transf_matrix[1][1] 0.008509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0JC A 1 501 501 0JC 0JC . D 2 0JC A 1 502 502 0JC 0JC . E 2 0JC A 1 503 503 0JC 0JC . F 2 0JC A 1 504 504 0JC 0JC . G 3 DGL A 1 505 505 DGL DGL . H 4 6CL B 1 501 506 6CL 6CL . I 5 PT B 1 502 501 PT PT . J 2 0JC B 1 503 502 0JC 0JC . K 2 0JC B 1 504 503 0JC 0JC . L 2 0JC B 1 505 504 0JC 0JC . M 2 0JC B 1 506 505 0JC 0JC . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x 152.361 _atom_site.Cartn_y 94.619 _atom_site.Cartn_z 2.768 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 73.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 446 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #