data_7KEM # _model_server_result.job_id Pk_OoLDMDJNz2Nmk9jZwcw _model_server_result.datetime_utc '2025-08-31 04:07:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":505}' # _entry.id 7KEM # _exptl.entry_id 7KEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 764.162 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Di-mu-iodobis(ethylenediamine)diplatinum(II) _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KEM _cell.length_a 117.528 _cell.length_b 121.051 _cell.length_c 122.699 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G CD DGL . A DGL 505 1_555 H N 6CL . B 6CL 501 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.336 ? covale ? covale2 G CD DGL . A DGL 505 1_555 H N 6CL . B 6CL 501 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.226 ? metalc ? metalc1 A SD MET 157 A MET 157 1_555 D PT1 0JC . A 0JC 502 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.736 ? metalc ? metalc2 A ND1 HIS 347 A HIS 347 1_555 C PT1 0JC . A 0JC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc3 B SD MET 153 B MET 153 1_555 M PT1 0JC . B 0JC 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc4 B ND1 HIS 347 B HIS 347 1_555 J PT1 0JC . B 0JC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C4 H16 I2 N4 Pt2 2' _chem_comp.formula_weight 764.162 _chem_comp.id 0JC _chem_comp.mon_nstd_flag . _chem_comp.name Di-mu-iodobis(ethylenediamine)diplatinum(II) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT1 N2 0JC sing 1 n n PT1 N1 0JC sing 2 n n N1 C1 0JC sing 3 n n N2 C2 0JC sing 4 n n C1 H3 0JC sing 5 n n C1 H4 0JC sing 6 n n C2 C1 0JC sing 7 n n C2 H5 0JC sing 8 n n C2 H6 0JC sing 9 n n PT1 I2 0JC sing 10 n n PT1 I1 0JC sing 11 n n I2 PT2 0JC sing 12 n n PT2 N3 0JC sing 13 n n PT2 N4 0JC sing 14 n n N3 C8 0JC sing 15 n n C8 C9 0JC sing 16 n n N4 C9 0JC sing 17 n n I1 PT2 0JC sing 18 n n C8 H51 0JC sing 19 n n C9 H61 0JC sing 20 n n C8 H7 0JC sing 21 n n C9 H8 0JC sing 22 n n N3 H9 0JC sing 23 n n N3 H10 0JC sing 24 n n N4 H11 0JC sing 25 n n N4 H12 0JC sing 26 n n N1 H1 0JC sing 27 n n N1 H14 0JC sing 28 n n N2 H2 0JC sing 29 n n N2 H16 0JC sing 30 n n # _atom_sites.entry_id 7KEM _atom_sites.fract_transf_matrix[1][1] 0.008509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0JC A 1 501 501 0JC 0JC . D 2 0JC A 1 502 502 0JC 0JC . E 2 0JC A 1 503 503 0JC 0JC . F 2 0JC A 1 504 504 0JC 0JC . G 3 DGL A 1 505 505 DGL DGL . H 4 6CL B 1 501 506 6CL 6CL . I 5 PT B 1 502 501 PT PT . J 2 0JC B 1 503 502 0JC 0JC . K 2 0JC B 1 504 503 0JC 0JC . L 2 0JC B 1 505 504 0JC 0JC . M 2 0JC B 1 506 505 0JC 0JC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT1 0JC . A . L 2 153.577 119.491 5.202 0 5.06 ? PT1 0JC 505 B 1 HETATM 2 PT PT1 0JC . B . L 2 153.708 118.265 5.412 0 54.25 ? PT1 0JC 505 B 1 HETATM 3 N N1 0JC . A . L 2 153.563 120.305 7.066 0 33.14 ? N1 0JC 505 B 1 HETATM 4 N N1 0JC . B . L 2 153.809 117.958 7.453 0 59.03 ? N1 0JC 505 B 1 HETATM 5 N N2 0JC . A . L 2 155.316 118.619 5.844 0 25.5 ? N2 0JC 505 B 1 HETATM 6 N N2 0JC . B . L 2 153.752 119.969 5.728 0 5.65 ? N2 0JC 505 B 1 HETATM 7 C C1 0JC . A . L 2 154.289 119.335 7.939 0 31.26 ? C1 0JC 505 B 1 HETATM 8 C C1 0JC . B . L 2 154.736 119.07 7.772 0 26.7 ? C1 0JC 505 B 1 HETATM 9 C C2 0JC . A . L 2 155.599 119.077 7.221 0 36.21 ? C2 0JC 505 B 1 HETATM 10 C C2 0JC . B . L 2 153.812 120.114 7.202 0 36.21 ? C2 0JC 505 B 1 HETATM 11 I I1 0JC . A . L 2 151.348 120.599 4.405 0 19.67 ? I1 0JC 505 B 1 HETATM 12 I I1 0JC . B . L 2 153.618 115.589 4.967 0 74.99 ? I1 0JC 505 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #