data_7KES # _model_server_result.job_id pFYFkJkTyn-kVDMIyUUQTA _model_server_result.datetime_utc '2024-11-16 10:47:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7KES # _exptl.entry_id 7KES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KES _cell.length_a 127.766 _cell.length_b 127.766 _cell.length_c 94.645 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KES _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 151 n y N1A C6A COA doub 152 n y C2A N3A COA doub 153 n y C2A H2A COA sing 154 n n N3A C4A COA sing 155 n y C4A C5A COA doub 156 n y C4A N9A COA sing 157 n y C5A C6A COA sing 158 n y C5A N7A COA sing 159 n y C6A N6A COA sing 160 n n N6A H61A COA sing 161 n n N6A H62A COA sing 162 n n N7A C8A COA doub 163 n y C8A N9A COA sing 164 n y C8A H8A COA sing 165 n n N9A C1B COA sing 166 n n C1B C2B COA sing 167 n n C1B O4B COA sing 168 n n C1B H1B COA sing 169 n n C2B O2B COA sing 170 n n C2B C3B COA sing 171 n n C2B H2B COA sing 172 n n O2B HO2A COA sing 173 n n C3B O3B COA sing 174 n n C3B C4B COA sing 175 n n C3B H3B COA sing 176 n n O3B P3B COA sing 177 n n P3B O7A COA doub 178 n n P3B O8A COA sing 179 n n P3B O9A COA sing 180 n n O8A HOA8 COA sing 181 n n O9A HOA9 COA sing 182 n n C4B O4B COA sing 183 n n C4B C5B COA sing 184 n n C4B H4B COA sing 185 n n C5B O5B COA sing 186 n n C5B H51A COA sing 187 n n C5B H52A COA sing 188 n n O5B P1A COA sing 189 n n P1A O1A COA doub 190 n n P1A O2A COA sing 191 n n P1A O3A COA sing 192 n n O2A HOA2 COA sing 193 n n O3A P2A COA sing 194 n n P2A O4A COA doub 195 n n P2A O5A COA sing 196 n n P2A O6A COA sing 197 n n O5A HOA5 COA sing 198 n n O6A CCP COA sing 199 n n CBP CCP COA sing 200 n n CBP CDP COA sing 201 n n CBP CEP COA sing 202 n n CBP CAP COA sing 203 n n CCP H121 COA sing 204 n n CCP H122 COA sing 205 n n CDP H131 COA sing 206 n n CDP H132 COA sing 207 n n CDP H133 COA sing 208 n n CEP H141 COA sing 209 n n CEP H142 COA sing 210 n n CEP H143 COA sing 211 n n CAP OAP COA sing 212 n n CAP C9P COA sing 213 n n CAP H10 COA sing 214 n n OAP HO1 COA sing 215 n n C9P O9P COA doub 216 n n C9P N8P COA sing 217 n n N8P C7P COA sing 218 n n N8P HN8 COA sing 219 n n C7P C6P COA sing 220 n n C7P H71 COA sing 221 n n C7P H72 COA sing 222 n n C6P C5P COA sing 223 n n C6P H61 COA sing 224 n n C6P H62 COA sing 225 n n C5P O5P COA doub 226 n n C5P N4P COA sing 227 n n N4P C3P COA sing 228 n n N4P HN4 COA sing 229 n n C3P C2P COA sing 230 n n C3P H31 COA sing 231 n n C3P H32 COA sing 232 n n C2P S1P COA sing 233 n n C2P H21 COA sing 234 n n C2P H22 COA sing 235 n n S1P HS1 COA sing 236 n n # _atom_sites.entry_id 7KES _atom_sites.fract_transf_matrix[1][1] 0.007827 _atom_sites.fract_transf_matrix[1][2] 0.004519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 301 GOL GOL . D 3 COA A 1 302 3 COA COA . E 4 AM2 A 1 303 3 AM2 AM2 . F 5 CL A 1 304 1 CL CL . G 2 GOL B 1 301 301 GOL GOL . H 2 GOL B 1 302 401 GOL GOL . I 2 GOL B 1 303 501 GOL GOL . J 3 COA B 1 304 4 COA COA . K 4 AM2 B 1 305 2 AM2 AM2 . L 6 HOH A 1 401 14 HOH HOH . L 6 HOH A 2 402 103 HOH HOH . L 6 HOH A 3 403 13 HOH HOH . L 6 HOH A 4 404 170 HOH HOH . L 6 HOH A 5 405 91 HOH HOH . L 6 HOH A 6 406 29 HOH HOH . L 6 HOH A 7 407 107 HOH HOH . L 6 HOH A 8 408 137 HOH HOH . L 6 HOH A 9 409 94 HOH HOH . L 6 HOH A 10 410 132 HOH HOH . L 6 HOH A 11 411 65 HOH HOH . L 6 HOH A 12 412 98 HOH HOH . L 6 HOH A 13 413 12 HOH HOH . L 6 HOH A 14 414 8 HOH HOH . L 6 HOH A 15 415 70 HOH HOH . L 6 HOH A 16 416 17 HOH HOH . L 6 HOH A 17 417 99 HOH HOH . L 6 HOH A 18 418 41 HOH HOH . L 6 HOH A 19 419 15 HOH HOH . L 6 HOH A 20 420 6 HOH HOH . L 6 HOH A 21 421 146 HOH HOH . L 6 HOH A 22 422 54 HOH HOH . L 6 HOH A 23 423 109 HOH HOH . L 6 HOH A 24 424 106 HOH HOH . L 6 HOH A 25 425 46 HOH HOH . L 6 HOH A 26 426 126 HOH HOH . L 6 HOH A 27 427 138 HOH HOH . L 6 HOH A 28 428 130 HOH HOH . L 6 HOH A 29 429 40 HOH HOH . L 6 HOH A 30 430 2 HOH HOH . L 6 HOH A 31 431 1 HOH HOH . L 6 HOH A 32 432 34 HOH HOH . L 6 HOH A 33 433 9 HOH HOH . L 6 HOH A 34 434 30 HOH HOH . L 6 HOH A 35 435 129 HOH HOH . L 6 HOH A 36 436 62 HOH HOH . L 6 HOH A 37 437 10 HOH HOH . L 6 HOH A 38 438 149 HOH HOH . L 6 HOH A 39 439 45 HOH HOH . L 6 HOH A 40 440 11 HOH HOH . L 6 HOH A 41 441 47 HOH HOH . L 6 HOH A 42 442 55 HOH HOH . L 6 HOH A 43 443 145 HOH HOH . L 6 HOH A 44 444 119 HOH HOH . L 6 HOH A 45 445 111 HOH HOH . L 6 HOH A 46 446 163 HOH HOH . L 6 HOH A 47 447 153 HOH HOH . L 6 HOH A 48 448 61 HOH HOH . L 6 HOH A 49 449 105 HOH HOH . L 6 HOH A 50 450 127 HOH HOH . L 6 HOH A 51 451 52 HOH HOH . L 6 HOH A 52 452 100 HOH HOH . L 6 HOH A 53 453 148 HOH HOH . L 6 HOH A 54 454 26 HOH HOH . L 6 HOH A 55 455 116 HOH HOH . L 6 HOH A 56 456 57 HOH HOH . L 6 HOH A 57 457 131 HOH HOH . L 6 HOH A 58 458 63 HOH HOH . L 6 HOH A 59 459 16 HOH HOH . L 6 HOH A 60 460 158 HOH HOH . L 6 HOH A 61 461 162 HOH HOH . L 6 HOH A 62 462 74 HOH HOH . L 6 HOH A 63 463 75 HOH HOH . L 6 HOH A 64 464 36 HOH HOH . L 6 HOH A 65 465 115 HOH HOH . L 6 HOH A 66 466 22 HOH HOH . L 6 HOH A 67 467 134 HOH HOH . L 6 HOH A 68 468 117 HOH HOH . L 6 HOH A 69 469 53 HOH HOH . L 6 HOH A 70 470 59 HOH HOH . L 6 HOH A 71 471 27 HOH HOH . L 6 HOH A 72 472 19 HOH HOH . L 6 HOH A 73 473 78 HOH HOH . L 6 HOH A 74 474 172 HOH HOH . L 6 HOH A 75 475 166 HOH HOH . L 6 HOH A 76 476 42 HOH HOH . L 6 HOH A 77 477 167 HOH HOH . L 6 HOH A 78 478 35 HOH HOH . L 6 HOH A 79 479 165 HOH HOH . L 6 HOH A 80 480 67 HOH HOH . L 6 HOH A 81 481 18 HOH HOH . L 6 HOH A 82 482 120 HOH HOH . L 6 HOH A 83 483 24 HOH HOH . L 6 HOH A 84 484 133 HOH HOH . L 6 HOH A 85 485 164 HOH HOH . L 6 HOH A 86 486 32 HOH HOH . L 6 HOH A 87 487 108 HOH HOH . L 6 HOH A 88 488 56 HOH HOH . L 6 HOH A 89 489 168 HOH HOH . L 6 HOH A 90 490 155 HOH HOH . L 6 HOH A 91 491 104 HOH HOH . L 6 HOH A 92 492 44 HOH HOH . L 6 HOH A 93 493 173 HOH HOH . L 6 HOH A 94 494 135 HOH HOH . L 6 HOH A 95 495 150 HOH HOH . L 6 HOH A 96 496 43 HOH HOH . L 6 HOH A 97 497 73 HOH HOH . L 6 HOH A 98 498 76 HOH HOH . L 6 HOH A 99 499 68 HOH HOH . L 6 HOH A 100 500 136 HOH HOH . L 6 HOH A 101 501 72 HOH HOH . L 6 HOH A 102 502 64 HOH HOH . L 6 HOH A 103 503 118 HOH HOH . L 6 HOH A 104 504 77 HOH HOH . L 6 HOH A 105 505 121 HOH HOH . L 6 HOH A 106 506 88 HOH HOH . L 6 HOH A 107 507 69 HOH HOH . L 6 HOH A 108 508 71 HOH HOH . M 6 HOH B 1 401 4 HOH HOH . M 6 HOH B 2 402 23 HOH HOH . M 6 HOH B 3 403 169 HOH HOH . M 6 HOH B 4 404 97 HOH HOH . M 6 HOH B 5 405 144 HOH HOH . M 6 HOH B 6 406 93 HOH HOH . M 6 HOH B 7 407 37 HOH HOH . M 6 HOH B 8 408 142 HOH HOH . M 6 HOH B 9 409 60 HOH HOH . M 6 HOH B 10 410 85 HOH HOH . M 6 HOH B 11 411 20 HOH HOH . M 6 HOH B 12 412 49 HOH HOH . M 6 HOH B 13 413 171 HOH HOH . M 6 HOH B 14 414 101 HOH HOH . M 6 HOH B 15 415 113 HOH HOH . M 6 HOH B 16 416 141 HOH HOH . M 6 HOH B 17 417 92 HOH HOH . M 6 HOH B 18 418 123 HOH HOH . M 6 HOH B 19 419 90 HOH HOH . M 6 HOH B 20 420 7 HOH HOH . M 6 HOH B 21 421 58 HOH HOH . M 6 HOH B 22 422 124 HOH HOH . M 6 HOH B 23 423 3 HOH HOH . M 6 HOH B 24 424 80 HOH HOH . M 6 HOH B 25 425 151 HOH HOH . M 6 HOH B 26 426 147 HOH HOH . M 6 HOH B 27 427 96 HOH HOH . M 6 HOH B 28 428 152 HOH HOH . M 6 HOH B 29 429 112 HOH HOH . M 6 HOH B 30 430 157 HOH HOH . M 6 HOH B 31 431 160 HOH HOH . M 6 HOH B 32 432 31 HOH HOH . M 6 HOH B 33 433 89 HOH HOH . M 6 HOH B 34 434 84 HOH HOH . M 6 HOH B 35 435 102 HOH HOH . M 6 HOH B 36 436 5 HOH HOH . M 6 HOH B 37 437 51 HOH HOH . M 6 HOH B 38 438 21 HOH HOH . M 6 HOH B 39 439 110 HOH HOH . M 6 HOH B 40 440 174 HOH HOH . M 6 HOH B 41 441 139 HOH HOH . M 6 HOH B 42 442 82 HOH HOH . M 6 HOH B 43 443 86 HOH HOH . M 6 HOH B 44 444 79 HOH HOH . M 6 HOH B 45 445 125 HOH HOH . M 6 HOH B 46 446 83 HOH HOH . M 6 HOH B 47 447 28 HOH HOH . M 6 HOH B 48 448 114 HOH HOH . M 6 HOH B 49 449 161 HOH HOH . M 6 HOH B 50 450 48 HOH HOH . M 6 HOH B 51 451 156 HOH HOH . M 6 HOH B 52 452 154 HOH HOH . M 6 HOH B 53 453 159 HOH HOH . M 6 HOH B 54 454 50 HOH HOH . M 6 HOH B 55 455 81 HOH HOH . M 6 HOH B 56 456 122 HOH HOH . M 6 HOH B 57 457 128 HOH HOH . M 6 HOH B 58 458 66 HOH HOH . M 6 HOH B 59 459 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 12.019 -48.006 -12.185 1 52.02 ? N1A COA 302 A 1 HETATM 2 C C2A COA . . . D 3 13.322 -47.636 -11.851 1 49.59 ? C2A COA 302 A 1 HETATM 3 N N3A COA . . . D 3 13.502 -46.817 -10.73 1 46.22 ? N3A COA 302 A 1 HETATM 4 C C4A COA . . . D 3 12.441 -46.389 -10.015 1 52.84 ? C4A COA 302 A 1 HETATM 5 C C5A COA . . . D 3 11.217 -46.779 -10.351 1 55.06 ? C5A COA 302 A 1 HETATM 6 C C6A COA . . . D 3 11.016 -47.561 -11.419 1 55.26 ? C6A COA 302 A 1 HETATM 7 N N6A COA . . . D 3 9.756 -47.884 -11.691 1 56.39 ? N6A COA 302 A 1 HETATM 8 N N7A COA . . . D 3 10.383 -46.232 -9.466 1 54.68 ? N7A COA 302 A 1 HETATM 9 C C8A COA . . . D 3 11.087 -45.52 -8.582 1 53.75 ? C8A COA 302 A 1 HETATM 10 N N9A COA . . . D 3 12.367 -45.719 -8.855 1 56.38 ? N9A COA 302 A 1 HETATM 11 C C1B COA . . . D 3 13.664 -45.153 -8.539 1 60.47 ? C1B COA 302 A 1 HETATM 12 C C2B COA . . . D 3 14.26 -43.799 -8.752 1 56.51 ? C2B COA 302 A 1 HETATM 13 O O2B COA . . . D 3 15.688 -43.739 -8.516 1 53.1 ? O2B COA 302 A 1 HETATM 14 C C3B COA . . . D 3 13.456 -42.743 -8.021 1 57.07 ? C3B COA 302 A 1 HETATM 15 O O3B COA . . . D 3 14.314 -41.641 -8.098 1 55.19 ? O3B COA 302 A 1 HETATM 16 P P3B COA . . . D 3 14.159 -40.543 -9.223 1 57.77 ? P3B COA 302 A 1 HETATM 17 O O7A COA . . . D 3 14.587 -39.312 -8.52 1 62.41 ? O7A COA 302 A 1 HETATM 18 O O8A COA . . . D 3 12.726 -40.537 -9.54 1 50.96 ? O8A COA 302 A 1 HETATM 19 O O9A COA . . . D 3 15.063 -41.061 -10.262 1 57.08 ? O9A COA 302 A 1 HETATM 20 C C4B COA . . . D 3 13.75 -43.49 -6.715 1 55.04 ? C4B COA 302 A 1 HETATM 21 O O4B COA . . . D 3 12.875 -44.448 -7.432 1 57.72 ? O4B COA 302 A 1 HETATM 22 C C5B COA . . . D 3 13.088 -42.719 -5.545 1 54.85 ? C5B COA 302 A 1 HETATM 23 O O5B COA . . . D 3 12.98 -43.466 -4.32 1 56.06 ? O5B COA 302 A 1 HETATM 24 P P1A COA . . . D 3 11.915 -43.302 -3.131 1 52.5 ? P1A COA 302 A 1 HETATM 25 O O1A COA . . . D 3 10.582 -43.689 -3.623 1 56.16 ? O1A COA 302 A 1 HETATM 26 O O2A COA . . . D 3 12.483 -43.989 -1.952 1 54.23 ? O2A COA 302 A 1 HETATM 27 O O3A COA . . . D 3 11.948 -41.706 -2.782 1 56.56 ? O3A COA 302 A 1 HETATM 28 P P2A COA . . . D 3 13.061 -40.912 -1.92 1 57.75 ? P2A COA 302 A 1 HETATM 29 O O4A COA . . . D 3 12.911 -39.468 -2.205 1 63.58 ? O4A COA 302 A 1 HETATM 30 O O5A COA . . . D 3 14.366 -41.574 -2.134 1 57.71 ? O5A COA 302 A 1 HETATM 31 O O6A COA . . . D 3 12.586 -41.187 -0.41 1 58.15 ? O6A COA 302 A 1 HETATM 32 C CBP COA . . . D 3 10.886 -41.228 1.274 1 53.9 ? CBP COA 302 A 1 HETATM 33 C CCP COA . . . D 3 11.543 -40.402 0.164 1 49.85 ? CCP COA 302 A 1 HETATM 34 C CDP COA . . . D 3 10.436 -42.547 0.649 1 50.64 ? CDP COA 302 A 1 HETATM 35 C CEP COA . . . D 3 9.664 -40.48 1.802 1 50.51 ? CEP COA 302 A 1 HETATM 36 C CAP COA . . . D 3 11.875 -41.534 2.419 1 55.59 ? CAP COA 302 A 1 HETATM 37 O OAP COA . . . D 3 12.291 -40.302 3.009 1 58.47 ? OAP COA 302 A 1 HETATM 38 C C9P COA . . . D 3 11.188 -42.398 3.495 1 55.11 ? C9P COA 302 A 1 HETATM 39 O O9P COA . . . D 3 10.511 -41.756 4.49 1 51.42 ? O9P COA 302 A 1 HETATM 40 N N8P COA . . . D 3 11.364 -43.725 3.391 1 56.36 ? N8P COA 302 A 1 HETATM 41 C C7P COA . . . D 3 10.79 -44.708 4.322 1 53.06 ? C7P COA 302 A 1 HETATM 42 C C6P COA . . . D 3 9.261 -44.658 4.171 1 53.65 ? C6P COA 302 A 1 HETATM 43 C C5P COA . . . D 3 8.599 -45.7 5.07 1 54.43 ? C5P COA 302 A 1 HETATM 44 O O5P COA . . . D 3 8.941 -46.88 5.002 1 58.24 ? O5P COA 302 A 1 HETATM 45 N N4P COA . . . D 3 7.627 -45.265 5.887 1 55.52 ? N4P COA 302 A 1 HETATM 46 C C3P COA . . . D 3 6.944 -46.215 6.783 1 57.83 ? C3P COA 302 A 1 HETATM 47 C C2P COA . . . D 3 5.717 -45.586 7.456 1 63.28 ? C2P COA 302 A 1 HETATM 48 S S1P COA . . . D 3 6.107 -44.136 8.503 1 73.18 ? S1P COA 302 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #