data_7KES # _model_server_result.job_id GnGgbwETXGOm1QQpHn9G3A _model_server_result.datetime_utc '2024-11-16 11:06:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 7KES # _exptl.entry_id 7KES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.577 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description APRAMYCIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KES _cell.length_a 127.766 _cell.length_b 127.766 _cell.length_c 94.645 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KES _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N # _chem_comp.formula 'C21 H41 N5 O11' _chem_comp.formula_weight 539.577 _chem_comp.id AM2 _chem_comp.mon_nstd_flag . _chem_comp.name APRAMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NEBRAMYCIN II;4-O-(3ALPHA-AMINO-6ALPHA-((4-AMINO-4-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY)-2,3,4,5ABETA,6,7,8,8AALPHA-OCTAHYDRO-8BETA-HYDROXY-7BETA-(METHYLAMINO)PYRANO(3,2-B)PYRAN-2ALPHA-YL)-2-DEOXY-D-STREPTAMINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 AM2 sing 13 n n CA1 OA4 AM2 sing 14 n n CA1 OA1 AM2 sing 15 n n CA1 HA1 AM2 sing 16 n n CA2 CA3 AM2 sing 17 n n CA2 NA2 AM2 sing 18 n n CA2 HA2 AM2 sing 19 n n CA3 CA4 AM2 sing 20 n n CA3 HA31 AM2 sing 21 n n CA3 HA32 AM2 sing 22 n n CA4 CA5 AM2 sing 23 n n CA4 OA5 AM2 sing 24 n n CA4 HA4 AM2 sing 25 n n CA5 CA6 AM2 sing 26 n n CA5 OA4 AM2 sing 27 n n CA5 HA5 AM2 sing 28 n n CA6 CA7 AM2 sing 29 n n CA6 OA6 AM2 sing 30 n n CA6 HA6 AM2 sing 31 n n CA7 CA8 AM2 sing 32 n n CA7 NA7 AM2 sing 33 n n CA7 HA7 AM2 sing 34 n n CA8 OA5 AM2 sing 35 n n CA8 OA8 AM2 sing 36 n n CA8 HA8 AM2 sing 37 n n CA9 NA7 AM2 sing 38 n n CA9 HA91 AM2 sing 39 n n CA9 HA92 AM2 sing 40 n n CA9 HA93 AM2 sing 41 n n NA2 HA21 AM2 sing 42 n n NA2 HA22 AM2 sing 43 n n NA7 H2 AM2 sing 44 n n OA6 H1 AM2 sing 45 n n OA8 CB1 AM2 sing 46 n n OA1 CC1 AM2 sing 47 n n CB1 CB2 AM2 sing 48 n n CB1 OB1 AM2 sing 49 n n CB1 HB1 AM2 sing 50 n n CB2 CB3 AM2 sing 51 n n CB2 OB2 AM2 sing 52 n n CB2 HB2 AM2 sing 53 n n CB3 CB4 AM2 sing 54 n n CB3 OB3 AM2 sing 55 n n CB3 HB3 AM2 sing 56 n n CB4 CB5 AM2 sing 57 n n CB4 NB4 AM2 sing 58 n n CB4 HB4 AM2 sing 59 n n CB5 CB6 AM2 sing 60 n n CB5 OB1 AM2 sing 61 n n CB5 HB5 AM2 sing 62 n n CB6 OB6 AM2 sing 63 n n CB6 HB61 AM2 sing 64 n n CB6 HB62 AM2 sing 65 n n NB4 HB41 AM2 sing 66 n n NB4 HB42 AM2 sing 67 n n OB2 H5 AM2 sing 68 n n OB3 H6 AM2 sing 69 n n OB6 HB6 AM2 sing 70 n n CC1 CC2 AM2 sing 71 n n CC1 CC6 AM2 sing 72 n n CC1 HC1 AM2 sing 73 n n CC2 CC3 AM2 sing 74 n n CC2 OC2 AM2 sing 75 n n CC2 HC2 AM2 sing 76 n n CC3 CC4 AM2 sing 77 n n CC3 OC3 AM2 sing 78 n n CC3 HC3 AM2 sing 79 n n CC4 CC5 AM2 sing 80 n n CC4 NC4 AM2 sing 81 n n CC4 HC4 AM2 sing 82 n n CC5 CC6 AM2 sing 83 n n CC5 HC51 AM2 sing 84 n n CC5 HC52 AM2 sing 85 n n CC6 NC6 AM2 sing 86 n n CC6 HC6 AM2 sing 87 n n NC4 HC41 AM2 sing 88 n n NC4 HC42 AM2 sing 89 n n NC6 HC61 AM2 sing 90 n n NC6 HC62 AM2 sing 91 n n OC2 H3 AM2 sing 92 n n OC3 H4 AM2 sing 93 n n # _atom_sites.entry_id 7KES _atom_sites.fract_transf_matrix[1][1] 0.007827 _atom_sites.fract_transf_matrix[1][2] 0.004519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 301 GOL GOL . D 3 COA A 1 302 3 COA COA . E 4 AM2 A 1 303 3 AM2 AM2 . F 5 CL A 1 304 1 CL CL . G 2 GOL B 1 301 301 GOL GOL . H 2 GOL B 1 302 401 GOL GOL . I 2 GOL B 1 303 501 GOL GOL . J 3 COA B 1 304 4 COA COA . K 4 AM2 B 1 305 2 AM2 AM2 . L 6 HOH A 1 401 14 HOH HOH . L 6 HOH A 2 402 103 HOH HOH . L 6 HOH A 3 403 13 HOH HOH . L 6 HOH A 4 404 170 HOH HOH . L 6 HOH A 5 405 91 HOH HOH . L 6 HOH A 6 406 29 HOH HOH . L 6 HOH A 7 407 107 HOH HOH . L 6 HOH A 8 408 137 HOH HOH . L 6 HOH A 9 409 94 HOH HOH . L 6 HOH A 10 410 132 HOH HOH . L 6 HOH A 11 411 65 HOH HOH . L 6 HOH A 12 412 98 HOH HOH . L 6 HOH A 13 413 12 HOH HOH . L 6 HOH A 14 414 8 HOH HOH . L 6 HOH A 15 415 70 HOH HOH . L 6 HOH A 16 416 17 HOH HOH . L 6 HOH A 17 417 99 HOH HOH . L 6 HOH A 18 418 41 HOH HOH . L 6 HOH A 19 419 15 HOH HOH . L 6 HOH A 20 420 6 HOH HOH . L 6 HOH A 21 421 146 HOH HOH . L 6 HOH A 22 422 54 HOH HOH . L 6 HOH A 23 423 109 HOH HOH . L 6 HOH A 24 424 106 HOH HOH . L 6 HOH A 25 425 46 HOH HOH . L 6 HOH A 26 426 126 HOH HOH . L 6 HOH A 27 427 138 HOH HOH . L 6 HOH A 28 428 130 HOH HOH . L 6 HOH A 29 429 40 HOH HOH . L 6 HOH A 30 430 2 HOH HOH . L 6 HOH A 31 431 1 HOH HOH . L 6 HOH A 32 432 34 HOH HOH . L 6 HOH A 33 433 9 HOH HOH . L 6 HOH A 34 434 30 HOH HOH . L 6 HOH A 35 435 129 HOH HOH . L 6 HOH A 36 436 62 HOH HOH . L 6 HOH A 37 437 10 HOH HOH . L 6 HOH A 38 438 149 HOH HOH . L 6 HOH A 39 439 45 HOH HOH . L 6 HOH A 40 440 11 HOH HOH . L 6 HOH A 41 441 47 HOH HOH . L 6 HOH A 42 442 55 HOH HOH . L 6 HOH A 43 443 145 HOH HOH . L 6 HOH A 44 444 119 HOH HOH . L 6 HOH A 45 445 111 HOH HOH . L 6 HOH A 46 446 163 HOH HOH . L 6 HOH A 47 447 153 HOH HOH . L 6 HOH A 48 448 61 HOH HOH . L 6 HOH A 49 449 105 HOH HOH . L 6 HOH A 50 450 127 HOH HOH . L 6 HOH A 51 451 52 HOH HOH . L 6 HOH A 52 452 100 HOH HOH . L 6 HOH A 53 453 148 HOH HOH . L 6 HOH A 54 454 26 HOH HOH . L 6 HOH A 55 455 116 HOH HOH . L 6 HOH A 56 456 57 HOH HOH . L 6 HOH A 57 457 131 HOH HOH . L 6 HOH A 58 458 63 HOH HOH . L 6 HOH A 59 459 16 HOH HOH . L 6 HOH A 60 460 158 HOH HOH . L 6 HOH A 61 461 162 HOH HOH . L 6 HOH A 62 462 74 HOH HOH . L 6 HOH A 63 463 75 HOH HOH . L 6 HOH A 64 464 36 HOH HOH . L 6 HOH A 65 465 115 HOH HOH . L 6 HOH A 66 466 22 HOH HOH . L 6 HOH A 67 467 134 HOH HOH . L 6 HOH A 68 468 117 HOH HOH . L 6 HOH A 69 469 53 HOH HOH . L 6 HOH A 70 470 59 HOH HOH . L 6 HOH A 71 471 27 HOH HOH . L 6 HOH A 72 472 19 HOH HOH . L 6 HOH A 73 473 78 HOH HOH . L 6 HOH A 74 474 172 HOH HOH . L 6 HOH A 75 475 166 HOH HOH . L 6 HOH A 76 476 42 HOH HOH . L 6 HOH A 77 477 167 HOH HOH . L 6 HOH A 78 478 35 HOH HOH . L 6 HOH A 79 479 165 HOH HOH . L 6 HOH A 80 480 67 HOH HOH . L 6 HOH A 81 481 18 HOH HOH . L 6 HOH A 82 482 120 HOH HOH . L 6 HOH A 83 483 24 HOH HOH . L 6 HOH A 84 484 133 HOH HOH . L 6 HOH A 85 485 164 HOH HOH . L 6 HOH A 86 486 32 HOH HOH . L 6 HOH A 87 487 108 HOH HOH . L 6 HOH A 88 488 56 HOH HOH . L 6 HOH A 89 489 168 HOH HOH . L 6 HOH A 90 490 155 HOH HOH . L 6 HOH A 91 491 104 HOH HOH . L 6 HOH A 92 492 44 HOH HOH . L 6 HOH A 93 493 173 HOH HOH . L 6 HOH A 94 494 135 HOH HOH . L 6 HOH A 95 495 150 HOH HOH . L 6 HOH A 96 496 43 HOH HOH . L 6 HOH A 97 497 73 HOH HOH . L 6 HOH A 98 498 76 HOH HOH . L 6 HOH A 99 499 68 HOH HOH . L 6 HOH A 100 500 136 HOH HOH . L 6 HOH A 101 501 72 HOH HOH . L 6 HOH A 102 502 64 HOH HOH . L 6 HOH A 103 503 118 HOH HOH . L 6 HOH A 104 504 77 HOH HOH . L 6 HOH A 105 505 121 HOH HOH . L 6 HOH A 106 506 88 HOH HOH . L 6 HOH A 107 507 69 HOH HOH . L 6 HOH A 108 508 71 HOH HOH . M 6 HOH B 1 401 4 HOH HOH . M 6 HOH B 2 402 23 HOH HOH . M 6 HOH B 3 403 169 HOH HOH . M 6 HOH B 4 404 97 HOH HOH . M 6 HOH B 5 405 144 HOH HOH . M 6 HOH B 6 406 93 HOH HOH . M 6 HOH B 7 407 37 HOH HOH . M 6 HOH B 8 408 142 HOH HOH . M 6 HOH B 9 409 60 HOH HOH . M 6 HOH B 10 410 85 HOH HOH . M 6 HOH B 11 411 20 HOH HOH . M 6 HOH B 12 412 49 HOH HOH . M 6 HOH B 13 413 171 HOH HOH . M 6 HOH B 14 414 101 HOH HOH . M 6 HOH B 15 415 113 HOH HOH . M 6 HOH B 16 416 141 HOH HOH . M 6 HOH B 17 417 92 HOH HOH . M 6 HOH B 18 418 123 HOH HOH . M 6 HOH B 19 419 90 HOH HOH . M 6 HOH B 20 420 7 HOH HOH . M 6 HOH B 21 421 58 HOH HOH . M 6 HOH B 22 422 124 HOH HOH . M 6 HOH B 23 423 3 HOH HOH . M 6 HOH B 24 424 80 HOH HOH . M 6 HOH B 25 425 151 HOH HOH . M 6 HOH B 26 426 147 HOH HOH . M 6 HOH B 27 427 96 HOH HOH . M 6 HOH B 28 428 152 HOH HOH . M 6 HOH B 29 429 112 HOH HOH . M 6 HOH B 30 430 157 HOH HOH . M 6 HOH B 31 431 160 HOH HOH . M 6 HOH B 32 432 31 HOH HOH . M 6 HOH B 33 433 89 HOH HOH . M 6 HOH B 34 434 84 HOH HOH . M 6 HOH B 35 435 102 HOH HOH . M 6 HOH B 36 436 5 HOH HOH . M 6 HOH B 37 437 51 HOH HOH . M 6 HOH B 38 438 21 HOH HOH . M 6 HOH B 39 439 110 HOH HOH . M 6 HOH B 40 440 174 HOH HOH . M 6 HOH B 41 441 139 HOH HOH . M 6 HOH B 42 442 82 HOH HOH . M 6 HOH B 43 443 86 HOH HOH . M 6 HOH B 44 444 79 HOH HOH . M 6 HOH B 45 445 125 HOH HOH . M 6 HOH B 46 446 83 HOH HOH . M 6 HOH B 47 447 28 HOH HOH . M 6 HOH B 48 448 114 HOH HOH . M 6 HOH B 49 449 161 HOH HOH . M 6 HOH B 50 450 48 HOH HOH . M 6 HOH B 51 451 156 HOH HOH . M 6 HOH B 52 452 154 HOH HOH . M 6 HOH B 53 453 159 HOH HOH . M 6 HOH B 54 454 50 HOH HOH . M 6 HOH B 55 455 81 HOH HOH . M 6 HOH B 56 456 122 HOH HOH . M 6 HOH B 57 457 128 HOH HOH . M 6 HOH B 58 458 66 HOH HOH . M 6 HOH B 59 459 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 AM2 . . . E 4 1.187 -40.547 8.77 1 128.84 ? CA1 AM2 303 A 1 HETATM 2 C CA2 AM2 . . . E 4 1.222 -39.54 7.626 1 132.33 ? CA2 AM2 303 A 1 HETATM 3 C CA3 AM2 . . . E 4 2.66 -39.278 7.199 1 134.17 ? CA3 AM2 303 A 1 HETATM 4 C CA4 AM2 . . . E 4 3.41 -38.717 8.408 1 136.58 ? CA4 AM2 303 A 1 HETATM 5 C CA5 AM2 . . . E 4 3.339 -39.721 9.562 1 135.75 ? CA5 AM2 303 A 1 HETATM 6 C CA6 AM2 . . . E 4 4.105 -39.103 10.74 1 137.52 ? CA6 AM2 303 A 1 HETATM 7 C CA7 AM2 . . . E 4 5.574 -38.843 10.339 1 138.31 ? CA7 AM2 303 A 1 HETATM 8 C CA8 AM2 . . . E 4 5.556 -37.901 9.169 1 139.69 ? CA8 AM2 303 A 1 HETATM 9 C CA9 AM2 . . . E 4 6.63 -39.118 12.515 1 136.05 ? CA9 AM2 303 A 1 HETATM 10 O OA4 AM2 . . . E 4 1.916 -39.969 9.905 1 132.41 ? OA4 AM2 303 A 1 HETATM 11 O OA5 AM2 . . . E 4 4.793 -38.444 8.065 1 138.29 ? OA5 AM2 303 A 1 HETATM 12 N NA2 AM2 . . . E 4 0.382 -39.966 6.497 1 133.14 ? NA2 AM2 303 A 1 HETATM 13 N NA7 AM2 . . . E 4 6.396 -38.216 11.386 1 137.28 ? NA7 AM2 303 A 1 HETATM 14 O OA6 AM2 . . . E 4 3.473 -37.886 11.132 1 138.32 ? OA6 AM2 303 A 1 HETATM 15 O OA8 AM2 . . . E 4 6.938 -37.648 8.787 1 143.86 ? OA8 AM2 303 A 1 HETATM 16 O OA1 AM2 . . . E 4 1.771 -41.806 8.378 1 120.28 ? OA1 AM2 303 A 1 HETATM 17 C CB1 AM2 . . . E 4 7.079 -37.227 7.418 1 149.45 ? CB1 AM2 303 A 1 HETATM 18 C CB2 AM2 . . . E 4 8.57 -37.016 7.147 1 151.98 ? CB2 AM2 303 A 1 HETATM 19 C CB3 AM2 . . . E 4 9.113 -35.897 7.975 1 153.19 ? CB3 AM2 303 A 1 HETATM 20 C CB4 AM2 . . . E 4 8.326 -34.653 7.655 1 152.51 ? CB4 AM2 303 A 1 HETATM 21 C CB5 AM2 . . . E 4 6.848 -34.889 7.978 1 152.08 ? CB5 AM2 303 A 1 HETATM 22 C CB6 AM2 . . . E 4 5.914 -33.721 7.623 1 151.42 ? CB6 AM2 303 A 1 HETATM 23 O OB1 AM2 . . . E 4 6.379 -35.992 7.176 1 151.27 ? OB1 AM2 303 A 1 HETATM 24 N NB4 AM2 . . . E 4 8.879 -33.546 8.447 1 151.5 ? NB4 AM2 303 A 1 HETATM 25 O OB2 AM2 . . . E 4 9.264 -38.265 7.381 1 151.78 ? OB2 AM2 303 A 1 HETATM 26 O OB3 AM2 . . . E 4 10.433 -35.677 7.475 1 153.97 ? OB3 AM2 303 A 1 HETATM 27 O OB6 AM2 . . . E 4 6.236 -32.536 8.35 1 150.79 ? OB6 AM2 303 A 1 HETATM 28 C CC1 AM2 . . . E 4 1.447 -42.979 9.186 1 111.19 ? CC1 AM2 303 A 1 HETATM 29 C CC2 AM2 . . . E 4 0.102 -43.629 8.708 1 109.14 ? CC2 AM2 303 A 1 HETATM 30 C CC3 AM2 . . . E 4 -0.2 -44.844 9.56 1 106.19 ? CC3 AM2 303 A 1 HETATM 31 C CC4 AM2 . . . E 4 0.928 -45.84 9.41 1 104.27 ? CC4 AM2 303 A 1 HETATM 32 C CC5 AM2 . . . E 4 2.223 -45.221 9.851 1 103.8 ? CC5 AM2 303 A 1 HETATM 33 C CC6 AM2 . . . E 4 2.502 -44.002 8.981 1 104.62 ? CC6 AM2 303 A 1 HETATM 34 N NC4 AM2 . . . E 4 0.658 -47.035 10.223 1 102.94 ? NC4 AM2 303 A 1 HETATM 35 N NC6 AM2 . . . E 4 3.764 -43.398 9.407 1 101.74 ? NC6 AM2 303 A 1 HETATM 36 O OC2 AM2 . . . E 4 -1.005 -42.73 8.838 1 109.54 ? OC2 AM2 303 A 1 HETATM 37 O OC3 AM2 . . . E 4 -1.392 -45.471 9.058 1 105.5 ? OC3 AM2 303 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #