data_7KFM # _model_server_result.job_id ydKZqIp89XZMjIimPTCNkA _model_server_result.datetime_utc '2024-11-22 21:36:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7KFM # _exptl.entry_id 7KFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KFM _cell.length_a 60.976 _cell.length_b 66.883 _cell.length_c 69.156 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 E O1 OXY . A OXY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc3 C FE HEM . A HEM 201 1_555 F OTT PG0 . A PG0 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 B NE2 HIS 55 B HIS 55 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 B NE2 HIS 89 B HIS 89 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7KFM _atom_sites.fract_transf_matrix[1][1] 0.0164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 201 HEM HEM . D 3 SO4 A 1 202 202 SO4 SO4 . E 4 OXY A 1 203 203 OXY OXY . F 5 PG0 A 1 204 204 PG0 PG0 . G 2 HEM B 1 201 201 HEM HEM . H 3 SO4 B 1 202 202 SO4 SO4 . I 6 HOH A 1 301 301 HOH HOH . I 6 HOH A 2 302 302 HOH HOH . I 6 HOH A 3 303 303 HOH HOH . I 6 HOH A 4 304 304 HOH HOH . I 6 HOH A 5 305 305 HOH HOH . I 6 HOH A 6 306 306 HOH HOH . I 6 HOH A 7 307 307 HOH HOH . I 6 HOH A 8 308 308 HOH HOH . I 6 HOH A 9 309 309 HOH HOH . I 6 HOH A 10 310 310 HOH HOH . I 6 HOH A 11 311 311 HOH HOH . I 6 HOH A 12 312 312 HOH HOH . I 6 HOH A 13 313 313 HOH HOH . I 6 HOH A 14 314 314 HOH HOH . I 6 HOH A 15 315 315 HOH HOH . I 6 HOH A 16 316 316 HOH HOH . I 6 HOH A 17 317 317 HOH HOH . I 6 HOH A 18 318 318 HOH HOH . I 6 HOH A 19 319 319 HOH HOH . I 6 HOH A 20 320 320 HOH HOH . I 6 HOH A 21 321 321 HOH HOH . I 6 HOH A 22 322 322 HOH HOH . I 6 HOH A 23 323 323 HOH HOH . I 6 HOH A 24 324 324 HOH HOH . I 6 HOH A 25 325 325 HOH HOH . I 6 HOH A 26 326 326 HOH HOH . I 6 HOH A 27 327 327 HOH HOH . I 6 HOH A 28 328 328 HOH HOH . I 6 HOH A 29 329 329 HOH HOH . I 6 HOH A 30 330 330 HOH HOH . I 6 HOH A 31 331 331 HOH HOH . I 6 HOH A 32 332 332 HOH HOH . I 6 HOH A 33 333 333 HOH HOH . I 6 HOH A 34 334 334 HOH HOH . I 6 HOH A 35 335 335 HOH HOH . I 6 HOH A 36 336 336 HOH HOH . I 6 HOH A 37 337 337 HOH HOH . I 6 HOH A 38 338 338 HOH HOH . I 6 HOH A 39 339 339 HOH HOH . I 6 HOH A 40 340 340 HOH HOH . I 6 HOH A 41 341 341 HOH HOH . I 6 HOH A 42 342 342 HOH HOH . I 6 HOH A 43 343 343 HOH HOH . I 6 HOH A 44 344 344 HOH HOH . I 6 HOH A 45 345 345 HOH HOH . I 6 HOH A 46 346 346 HOH HOH . I 6 HOH A 47 347 347 HOH HOH . I 6 HOH A 48 348 348 HOH HOH . I 6 HOH A 49 349 349 HOH HOH . I 6 HOH A 50 350 350 HOH HOH . I 6 HOH A 51 351 351 HOH HOH . I 6 HOH A 52 352 352 HOH HOH . I 6 HOH A 53 353 353 HOH HOH . I 6 HOH A 54 354 354 HOH HOH . I 6 HOH A 55 355 355 HOH HOH . I 6 HOH A 56 356 356 HOH HOH . I 6 HOH A 57 357 357 HOH HOH . I 6 HOH A 58 358 358 HOH HOH . I 6 HOH A 59 359 359 HOH HOH . I 6 HOH A 60 360 360 HOH HOH . I 6 HOH A 61 361 361 HOH HOH . I 6 HOH A 62 362 362 HOH HOH . I 6 HOH A 63 363 363 HOH HOH . I 6 HOH A 64 364 364 HOH HOH . I 6 HOH A 65 365 365 HOH HOH . I 6 HOH A 66 366 366 HOH HOH . I 6 HOH A 67 367 367 HOH HOH . I 6 HOH A 68 368 368 HOH HOH . I 6 HOH A 69 369 369 HOH HOH . I 6 HOH A 70 370 370 HOH HOH . I 6 HOH A 71 371 371 HOH HOH . J 6 HOH B 1 301 301 HOH HOH . J 6 HOH B 2 302 302 HOH HOH . J 6 HOH B 3 303 303 HOH HOH . J 6 HOH B 4 304 304 HOH HOH . J 6 HOH B 5 305 305 HOH HOH . J 6 HOH B 6 306 306 HOH HOH . J 6 HOH B 7 307 307 HOH HOH . J 6 HOH B 8 308 308 HOH HOH . J 6 HOH B 9 309 309 HOH HOH . J 6 HOH B 10 310 310 HOH HOH . J 6 HOH B 11 311 311 HOH HOH . J 6 HOH B 12 312 312 HOH HOH . J 6 HOH B 13 313 313 HOH HOH . J 6 HOH B 14 314 314 HOH HOH . J 6 HOH B 15 315 315 HOH HOH . J 6 HOH B 16 316 316 HOH HOH . J 6 HOH B 17 317 317 HOH HOH . J 6 HOH B 18 318 318 HOH HOH . J 6 HOH B 19 319 319 HOH HOH . J 6 HOH B 20 320 320 HOH HOH . J 6 HOH B 21 321 321 HOH HOH . J 6 HOH B 22 322 322 HOH HOH . J 6 HOH B 23 323 323 HOH HOH . J 6 HOH B 24 324 324 HOH HOH . J 6 HOH B 25 325 325 HOH HOH . J 6 HOH B 26 326 326 HOH HOH . J 6 HOH B 27 327 327 HOH HOH . J 6 HOH B 28 328 328 HOH HOH . J 6 HOH B 29 329 329 HOH HOH . J 6 HOH B 30 330 330 HOH HOH . J 6 HOH B 31 331 331 HOH HOH . J 6 HOH B 32 332 332 HOH HOH . J 6 HOH B 33 333 333 HOH HOH . J 6 HOH B 34 334 334 HOH HOH . J 6 HOH B 35 335 335 HOH HOH . J 6 HOH B 36 336 336 HOH HOH . J 6 HOH B 37 337 337 HOH HOH . J 6 HOH B 38 338 338 HOH HOH . J 6 HOH B 39 339 339 HOH HOH . J 6 HOH B 40 340 340 HOH HOH . J 6 HOH B 41 341 341 HOH HOH . J 6 HOH B 42 342 342 HOH HOH . J 6 HOH B 43 343 343 HOH HOH . J 6 HOH B 44 344 344 HOH HOH . J 6 HOH B 45 345 345 HOH HOH . J 6 HOH B 46 346 346 HOH HOH . J 6 HOH B 47 347 347 HOH HOH . J 6 HOH B 48 348 348 HOH HOH . J 6 HOH B 49 349 349 HOH HOH . J 6 HOH B 50 350 350 HOH HOH . J 6 HOH B 51 351 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 -35.819 -6.642 24.642 1 43.81 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . G 2 -33.973 -7.81 20.338 1 32.86 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . G 2 -37.734 -5.899 17.963 1 46.01 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . G 2 -39.565 -4.7 22.247 1 40.72 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . G 2 -34.929 -7.074 23.693 1 48.13 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . G 2 -33.558 -7.542 23.886 1 64.9 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . G 2 -33.078 -7.854 22.678 1 36.09 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . G 2 -34.101 -7.604 21.687 1 34.32 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . G 2 -31.658 -8.393 22.402 1 45.68 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . G 2 -32.718 -7.683 25.192 1 77.12 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . G 2 -33.508 -7.713 26.503 1 87.29 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . G 2 -33.368 -6.393 27.224 1 97.25 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . G 2 -32.34 -6.211 27.93 1 97.17 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . G 2 -34.28 -5.526 27.098 1 82.56 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . G 2 -34.844 -7.383 19.372 1 38.74 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . G 2 -34.598 -7.559 17.959 1 34.59 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . G 2 -35.613 -7.042 17.286 1 41.05 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . G 2 -36.555 -6.518 18.257 1 33.11 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . G 2 -33.373 -8.212 17.304 1 42.98 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . G 2 -35.692 -7.047 15.739 1 42.9 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . G 2 -36.702 -6.5 15.058 1 53.12 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . G 2 -38.553 -5.396 18.922 1 34.54 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . G 2 -39.796 -4.72 18.657 1 39.71 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . G 2 -40.324 -4.381 19.831 1 49.3 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . G 2 -39.412 -4.834 20.885 1 37.16 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . G 2 -40.391 -4.458 17.255 1 42.33 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . G 2 -41.673 -3.633 19.963 1 48.23 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . G 2 -42.26 -3.416 21.146 1 60.15 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . G 2 -38.72 -5.144 23.244 1 38.84 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . G 2 -38.98 -5.001 24.659 1 44.49 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . G 2 -37.948 -5.536 25.325 1 43.98 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . G 2 -37.005 -6.031 24.356 1 38.44 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . G 2 -40.251 -4.338 25.234 1 42.41 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . G 2 -37.742 -5.628 26.85 1 64.13 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . G 2 -37.293 -4.262 27.361 1 64.05 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . G 2 -38.481 -3.6 28.01 1 83.92 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . G 2 -39.166 -4.268 28.829 1 84.1 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . G 2 -38.751 -2.408 27.706 1 86.64 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . G 2 -35.221 -7.123 22.342 1 39.22 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . G 2 -36.083 -6.75 19.538 1 22.36 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . G 2 -38.337 -5.452 20.284 1 38.69 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . G 2 -37.501 -5.784 23.097 1 31.17 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . G 2 -36.769 -6.265 21.394 1 43.36 ? FE HEM 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #