data_7KFP # _model_server_result.job_id DXaRUCuDSoF1cKc_NilB1A _model_server_result.datetime_utc '2024-11-21 10:45:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 7KFP # _exptl.entry_id 7KFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KFP _cell.length_a 66.532 _cell.length_b 88.66 _cell.length_c 94.426 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 157 A LEU 602 1_555 A N CME 158 A CME 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CME 158 A CME 603 1_555 A N LEU 159 A LEU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 7KFP _atom_sites.fract_transf_matrix[1][1] 0.01503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WD7 A 1 1001 1001 WD7 BS6 . C 3 DMS A 1 1002 1401 DMS DMS . D 4 GOL A 1 1003 1501 GOL GOL . E 5 SO4 A 1 1004 1 SO4 SO4 . F 5 SO4 A 1 1005 2 SO4 SO4 . G 5 SO4 A 1 1006 3 SO4 SO4 . H 5 SO4 A 1 1007 4 SO4 SO4 . I 5 SO4 A 1 1008 5 SO4 SO4 . J 6 HOH A 1 1101 250 HOH HOH . J 6 HOH A 2 1102 247 HOH HOH . J 6 HOH A 3 1103 159 HOH HOH . J 6 HOH A 4 1104 188 HOH HOH . J 6 HOH A 5 1105 55 HOH HOH . J 6 HOH A 6 1106 123 HOH HOH . J 6 HOH A 7 1107 226 HOH HOH . J 6 HOH A 8 1108 256 HOH HOH . J 6 HOH A 9 1109 34 HOH HOH . J 6 HOH A 10 1110 219 HOH HOH . J 6 HOH A 11 1111 99 HOH HOH . J 6 HOH A 12 1112 191 HOH HOH . J 6 HOH A 13 1113 227 HOH HOH . J 6 HOH A 14 1114 137 HOH HOH . J 6 HOH A 15 1115 178 HOH HOH . J 6 HOH A 16 1116 73 HOH HOH . J 6 HOH A 17 1117 83 HOH HOH . J 6 HOH A 18 1118 239 HOH HOH . J 6 HOH A 19 1119 115 HOH HOH . J 6 HOH A 20 1120 10 HOH HOH . J 6 HOH A 21 1121 77 HOH HOH . J 6 HOH A 22 1122 27 HOH HOH . J 6 HOH A 23 1123 30 HOH HOH . J 6 HOH A 24 1124 51 HOH HOH . J 6 HOH A 25 1125 160 HOH HOH . J 6 HOH A 26 1126 38 HOH HOH . J 6 HOH A 27 1127 116 HOH HOH . J 6 HOH A 28 1128 249 HOH HOH . J 6 HOH A 29 1129 90 HOH HOH . J 6 HOH A 30 1130 8 HOH HOH . J 6 HOH A 31 1131 63 HOH HOH . J 6 HOH A 32 1132 158 HOH HOH . J 6 HOH A 33 1133 67 HOH HOH . J 6 HOH A 34 1134 144 HOH HOH . J 6 HOH A 35 1135 35 HOH HOH . J 6 HOH A 36 1136 57 HOH HOH . J 6 HOH A 37 1137 142 HOH HOH . J 6 HOH A 38 1138 2 HOH HOH . J 6 HOH A 39 1139 100 HOH HOH . J 6 HOH A 40 1140 146 HOH HOH . J 6 HOH A 41 1141 106 HOH HOH . J 6 HOH A 42 1142 64 HOH HOH . J 6 HOH A 43 1143 132 HOH HOH . J 6 HOH A 44 1144 105 HOH HOH . J 6 HOH A 45 1145 232 HOH HOH . J 6 HOH A 46 1146 31 HOH HOH . J 6 HOH A 47 1147 89 HOH HOH . J 6 HOH A 48 1148 24 HOH HOH . J 6 HOH A 49 1149 134 HOH HOH . J 6 HOH A 50 1150 25 HOH HOH . J 6 HOH A 51 1151 43 HOH HOH . J 6 HOH A 52 1152 22 HOH HOH . J 6 HOH A 53 1153 61 HOH HOH . J 6 HOH A 54 1154 193 HOH HOH . J 6 HOH A 55 1155 151 HOH HOH . J 6 HOH A 56 1156 205 HOH HOH . J 6 HOH A 57 1157 127 HOH HOH . J 6 HOH A 58 1158 131 HOH HOH . J 6 HOH A 59 1159 18 HOH HOH . J 6 HOH A 60 1160 45 HOH HOH . J 6 HOH A 61 1161 236 HOH HOH . J 6 HOH A 62 1162 97 HOH HOH . J 6 HOH A 63 1163 133 HOH HOH . J 6 HOH A 64 1164 121 HOH HOH . J 6 HOH A 65 1165 4 HOH HOH . J 6 HOH A 66 1166 196 HOH HOH . J 6 HOH A 67 1167 145 HOH HOH . J 6 HOH A 68 1168 54 HOH HOH . J 6 HOH A 69 1169 254 HOH HOH . J 6 HOH A 70 1170 148 HOH HOH . J 6 HOH A 71 1171 101 HOH HOH . J 6 HOH A 72 1172 156 HOH HOH . J 6 HOH A 73 1173 150 HOH HOH . J 6 HOH A 74 1174 245 HOH HOH . J 6 HOH A 75 1175 71 HOH HOH . J 6 HOH A 76 1176 109 HOH HOH . J 6 HOH A 77 1177 13 HOH HOH . J 6 HOH A 78 1178 195 HOH HOH . J 6 HOH A 79 1179 111 HOH HOH . J 6 HOH A 80 1180 78 HOH HOH . J 6 HOH A 81 1181 153 HOH HOH . J 6 HOH A 82 1182 119 HOH HOH . J 6 HOH A 83 1183 26 HOH HOH . J 6 HOH A 84 1184 19 HOH HOH . J 6 HOH A 85 1185 255 HOH HOH . J 6 HOH A 86 1186 202 HOH HOH . J 6 HOH A 87 1187 112 HOH HOH . J 6 HOH A 88 1188 181 HOH HOH . J 6 HOH A 89 1189 221 HOH HOH . J 6 HOH A 90 1190 60 HOH HOH . J 6 HOH A 91 1191 82 HOH HOH . J 6 HOH A 92 1192 87 HOH HOH . J 6 HOH A 93 1193 6 HOH HOH . J 6 HOH A 94 1194 62 HOH HOH . J 6 HOH A 95 1195 228 HOH HOH . J 6 HOH A 96 1196 155 HOH HOH . J 6 HOH A 97 1197 217 HOH HOH . J 6 HOH A 98 1198 237 HOH HOH . J 6 HOH A 99 1199 53 HOH HOH . J 6 HOH A 100 1200 23 HOH HOH . J 6 HOH A 101 1201 206 HOH HOH . J 6 HOH A 102 1202 233 HOH HOH . J 6 HOH A 103 1203 120 HOH HOH . J 6 HOH A 104 1204 128 HOH HOH . J 6 HOH A 105 1205 102 HOH HOH . J 6 HOH A 106 1206 91 HOH HOH . J 6 HOH A 107 1207 88 HOH HOH . J 6 HOH A 108 1208 84 HOH HOH . J 6 HOH A 109 1209 46 HOH HOH . J 6 HOH A 110 1210 80 HOH HOH . J 6 HOH A 111 1211 199 HOH HOH . J 6 HOH A 112 1212 21 HOH HOH . J 6 HOH A 113 1213 214 HOH HOH . J 6 HOH A 114 1214 36 HOH HOH . J 6 HOH A 115 1215 93 HOH HOH . J 6 HOH A 116 1216 243 HOH HOH . J 6 HOH A 117 1217 12 HOH HOH . J 6 HOH A 118 1218 11 HOH HOH . J 6 HOH A 119 1219 47 HOH HOH . J 6 HOH A 120 1220 225 HOH HOH . J 6 HOH A 121 1221 68 HOH HOH . J 6 HOH A 122 1222 129 HOH HOH . J 6 HOH A 123 1223 185 HOH HOH . J 6 HOH A 124 1224 14 HOH HOH . J 6 HOH A 125 1225 118 HOH HOH . J 6 HOH A 126 1226 59 HOH HOH . J 6 HOH A 127 1227 85 HOH HOH . J 6 HOH A 128 1228 69 HOH HOH . J 6 HOH A 129 1229 74 HOH HOH . J 6 HOH A 130 1230 42 HOH HOH . J 6 HOH A 131 1231 41 HOH HOH . J 6 HOH A 132 1232 164 HOH HOH . J 6 HOH A 133 1233 186 HOH HOH . J 6 HOH A 134 1234 147 HOH HOH . J 6 HOH A 135 1235 29 HOH HOH . J 6 HOH A 136 1236 136 HOH HOH . J 6 HOH A 137 1237 58 HOH HOH . J 6 HOH A 138 1238 192 HOH HOH . J 6 HOH A 139 1239 234 HOH HOH . J 6 HOH A 140 1240 213 HOH HOH . J 6 HOH A 141 1241 246 HOH HOH . J 6 HOH A 142 1242 244 HOH HOH . J 6 HOH A 143 1243 33 HOH HOH . J 6 HOH A 144 1244 70 HOH HOH . J 6 HOH A 145 1245 56 HOH HOH . J 6 HOH A 146 1246 52 HOH HOH . J 6 HOH A 147 1247 95 HOH HOH . J 6 HOH A 148 1248 20 HOH HOH . J 6 HOH A 149 1249 65 HOH HOH . J 6 HOH A 150 1250 81 HOH HOH . J 6 HOH A 151 1251 135 HOH HOH . J 6 HOH A 152 1252 165 HOH HOH . J 6 HOH A 153 1253 44 HOH HOH . J 6 HOH A 154 1254 189 HOH HOH . J 6 HOH A 155 1255 9 HOH HOH . J 6 HOH A 156 1256 98 HOH HOH . J 6 HOH A 157 1257 173 HOH HOH . J 6 HOH A 158 1258 49 HOH HOH . J 6 HOH A 159 1259 240 HOH HOH . J 6 HOH A 160 1260 141 HOH HOH . J 6 HOH A 161 1261 50 HOH HOH . J 6 HOH A 162 1262 94 HOH HOH . J 6 HOH A 163 1263 183 HOH HOH . J 6 HOH A 164 1264 66 HOH HOH . J 6 HOH A 165 1265 238 HOH HOH . J 6 HOH A 166 1266 104 HOH HOH . J 6 HOH A 167 1267 3 HOH HOH . J 6 HOH A 168 1268 204 HOH HOH . J 6 HOH A 169 1269 190 HOH HOH . J 6 HOH A 170 1270 16 HOH HOH . J 6 HOH A 171 1271 15 HOH HOH . J 6 HOH A 172 1272 198 HOH HOH . J 6 HOH A 173 1273 154 HOH HOH . J 6 HOH A 174 1274 7 HOH HOH . J 6 HOH A 175 1275 76 HOH HOH . J 6 HOH A 176 1276 1 HOH HOH . J 6 HOH A 177 1277 75 HOH HOH . J 6 HOH A 178 1278 72 HOH HOH . J 6 HOH A 179 1279 152 HOH HOH . J 6 HOH A 180 1280 218 HOH HOH . J 6 HOH A 181 1281 96 HOH HOH . J 6 HOH A 182 1282 209 HOH HOH . J 6 HOH A 183 1283 138 HOH HOH . J 6 HOH A 184 1284 113 HOH HOH . J 6 HOH A 185 1285 86 HOH HOH . J 6 HOH A 186 1286 174 HOH HOH . J 6 HOH A 187 1287 208 HOH HOH . J 6 HOH A 188 1288 194 HOH HOH . J 6 HOH A 189 1289 157 HOH HOH . J 6 HOH A 190 1290 162 HOH HOH . J 6 HOH A 191 1291 103 HOH HOH . J 6 HOH A 192 1292 161 HOH HOH . J 6 HOH A 193 1293 17 HOH HOH . J 6 HOH A 194 1294 201 HOH HOH . J 6 HOH A 195 1295 37 HOH HOH . J 6 HOH A 196 1296 258 HOH HOH . J 6 HOH A 197 1297 92 HOH HOH . J 6 HOH A 198 1298 179 HOH HOH . J 6 HOH A 199 1299 48 HOH HOH . J 6 HOH A 200 1300 110 HOH HOH . J 6 HOH A 201 1301 107 HOH HOH . J 6 HOH A 202 1302 126 HOH HOH . J 6 HOH A 203 1303 79 HOH HOH . J 6 HOH A 204 1304 149 HOH HOH . J 6 HOH A 205 1305 39 HOH HOH . J 6 HOH A 206 1306 40 HOH HOH . J 6 HOH A 207 1307 139 HOH HOH . J 6 HOH A 208 1308 114 HOH HOH . J 6 HOH A 209 1309 231 HOH HOH . J 6 HOH A 210 1310 212 HOH HOH . J 6 HOH A 211 1311 5 HOH HOH . J 6 HOH A 212 1312 167 HOH HOH . J 6 HOH A 213 1313 32 HOH HOH . J 6 HOH A 214 1314 251 HOH HOH . J 6 HOH A 215 1315 177 HOH HOH . J 6 HOH A 216 1316 180 HOH HOH . J 6 HOH A 217 1317 200 HOH HOH . J 6 HOH A 218 1318 108 HOH HOH . J 6 HOH A 219 1319 172 HOH HOH . J 6 HOH A 220 1320 175 HOH HOH . J 6 HOH A 221 1321 140 HOH HOH . J 6 HOH A 222 1322 170 HOH HOH . J 6 HOH A 223 1323 210 HOH HOH . J 6 HOH A 224 1324 215 HOH HOH . J 6 HOH A 225 1325 197 HOH HOH . J 6 HOH A 226 1326 229 HOH HOH . J 6 HOH A 227 1327 176 HOH HOH . J 6 HOH A 228 1328 257 HOH HOH . J 6 HOH A 229 1329 253 HOH HOH . J 6 HOH A 230 1330 224 HOH HOH . J 6 HOH A 231 1331 130 HOH HOH . J 6 HOH A 232 1332 124 HOH HOH . J 6 HOH A 233 1333 235 HOH HOH . J 6 HOH A 234 1334 187 HOH HOH . J 6 HOH A 235 1335 207 HOH HOH . J 6 HOH A 236 1336 222 HOH HOH . J 6 HOH A 237 1337 182 HOH HOH . J 6 HOH A 238 1338 223 HOH HOH . J 6 HOH A 239 1339 168 HOH HOH . J 6 HOH A 240 1340 117 HOH HOH . J 6 HOH A 241 1341 252 HOH HOH . J 6 HOH A 242 1342 230 HOH HOH . J 6 HOH A 243 1343 28 HOH HOH . J 6 HOH A 244 1344 169 HOH HOH . J 6 HOH A 245 1345 143 HOH HOH . J 6 HOH A 246 1346 248 HOH HOH . J 6 HOH A 247 1347 125 HOH HOH . J 6 HOH A 248 1348 163 HOH HOH . J 6 HOH A 249 1349 203 HOH HOH . J 6 HOH A 250 1350 216 HOH HOH . J 6 HOH A 251 1351 171 HOH HOH . J 6 HOH A 252 1352 220 HOH HOH . J 6 HOH A 253 1353 166 HOH HOH . J 6 HOH A 254 1354 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 10.043 2.103 4.712 1 55.01 ? S DMS 1002 A 1 HETATM 2 O O DMS . . . C 3 10.254 1.146 3.584 1 47.55 ? O DMS 1002 A 1 HETATM 3 C C1 DMS . . . C 3 11.653 2.412 5.486 1 46.24 ? C1 DMS 1002 A 1 HETATM 4 C C2 DMS . . . C 3 9.162 1.305 6.088 1 41.87 ? C2 DMS 1002 A 1 HETATM 5 H H11 DMS . . . C 3 11.538 3.116 6.27 1 55.56 ? H11 DMS 1002 A 1 HETATM 6 H H12 DMS . . . C 3 12.325 2.796 4.764 1 55.56 ? H12 DMS 1002 A 1 HETATM 7 H H13 DMS . . . C 3 12.036 1.507 5.878 1 55.56 ? H13 DMS 1002 A 1 HETATM 8 H H21 DMS . . . C 3 8.351 1.916 6.39 1 50.32 ? H21 DMS 1002 A 1 HETATM 9 H H22 DMS . . . C 3 9.826 1.173 6.903 1 50.32 ? H22 DMS 1002 A 1 HETATM 10 H H23 DMS . . . C 3 8.796 0.363 5.775 1 50.32 ? H23 DMS 1002 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #