data_7KG3 # _model_server_result.job_id 8gS6eD_0_SuefS69yhew0g _model_server_result.datetime_utc '2024-11-21 11:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7KG3 # _exptl.entry_id 7KG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KG3 _cell.length_a 112.594 _cell.length_b 112.594 _cell.length_c 41.407 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 275 n n C1 C3 MLI sing 276 n n C1 H11 MLI sing 277 n n C1 H12 MLI sing 278 n n C2 O6 MLI doub 279 n n C2 O7 MLI sing 280 n n C3 O8 MLI doub 281 n n C3 O9 MLI sing 282 n n # _atom_sites.entry_id 7KG3 _atom_sites.fract_transf_matrix[1][1] 0.008881 _atom_sites.fract_transf_matrix[1][2] 0.005128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 201 201 MLI MLI . C 2 MLI A 1 202 301 MLI MLI . D 3 MES A 1 203 201 MES MES . E 4 GOL A 1 204 301 GOL GOL . F 5 SO4 A 1 205 401 SO4 SO4 . G 5 SO4 A 1 206 402 SO4 SO4 . H 5 SO4 A 1 207 403 SO4 SO4 . I 6 HOH A 1 301 166 HOH HOH . I 6 HOH A 2 302 76 HOH HOH . I 6 HOH A 3 303 41 HOH HOH . I 6 HOH A 4 304 164 HOH HOH . I 6 HOH A 5 305 165 HOH HOH . I 6 HOH A 6 306 53 HOH HOH . I 6 HOH A 7 307 119 HOH HOH . I 6 HOH A 8 308 96 HOH HOH . I 6 HOH A 9 309 18 HOH HOH . I 6 HOH A 10 310 102 HOH HOH . I 6 HOH A 11 311 132 HOH HOH . I 6 HOH A 12 312 150 HOH HOH . I 6 HOH A 13 313 129 HOH HOH . I 6 HOH A 14 314 40 HOH HOH . I 6 HOH A 15 315 89 HOH HOH . I 6 HOH A 16 316 10 HOH HOH . I 6 HOH A 17 317 122 HOH HOH . I 6 HOH A 18 318 125 HOH HOH . I 6 HOH A 19 319 97 HOH HOH . I 6 HOH A 20 320 111 HOH HOH . I 6 HOH A 21 321 162 HOH HOH . I 6 HOH A 22 322 7 HOH HOH . I 6 HOH A 23 323 88 HOH HOH . I 6 HOH A 24 324 70 HOH HOH . I 6 HOH A 25 325 75 HOH HOH . I 6 HOH A 26 326 12 HOH HOH . I 6 HOH A 27 327 130 HOH HOH . I 6 HOH A 28 328 1 HOH HOH . I 6 HOH A 29 329 143 HOH HOH . I 6 HOH A 30 330 3 HOH HOH . I 6 HOH A 31 331 46 HOH HOH . I 6 HOH A 32 332 9 HOH HOH . I 6 HOH A 33 333 16 HOH HOH . I 6 HOH A 34 334 27 HOH HOH . I 6 HOH A 35 335 101 HOH HOH . I 6 HOH A 36 336 30 HOH HOH . I 6 HOH A 37 337 68 HOH HOH . I 6 HOH A 38 338 28 HOH HOH . I 6 HOH A 39 339 151 HOH HOH . I 6 HOH A 40 340 58 HOH HOH . I 6 HOH A 41 341 64 HOH HOH . I 6 HOH A 42 342 19 HOH HOH . I 6 HOH A 43 343 11 HOH HOH . I 6 HOH A 44 344 32 HOH HOH . I 6 HOH A 45 345 33 HOH HOH . I 6 HOH A 46 346 25 HOH HOH . I 6 HOH A 47 347 56 HOH HOH . I 6 HOH A 48 348 146 HOH HOH . I 6 HOH A 49 349 21 HOH HOH . I 6 HOH A 50 350 6 HOH HOH . I 6 HOH A 51 351 39 HOH HOH . I 6 HOH A 52 352 35 HOH HOH . I 6 HOH A 53 353 14 HOH HOH . I 6 HOH A 54 354 43 HOH HOH . I 6 HOH A 55 355 5 HOH HOH . I 6 HOH A 56 356 65 HOH HOH . I 6 HOH A 57 357 47 HOH HOH . I 6 HOH A 58 358 104 HOH HOH . I 6 HOH A 59 359 81 HOH HOH . I 6 HOH A 60 360 22 HOH HOH . I 6 HOH A 61 361 142 HOH HOH . I 6 HOH A 62 362 8 HOH HOH . I 6 HOH A 63 363 17 HOH HOH . I 6 HOH A 64 364 29 HOH HOH . I 6 HOH A 65 365 87 HOH HOH . I 6 HOH A 66 366 55 HOH HOH . I 6 HOH A 67 367 24 HOH HOH . I 6 HOH A 68 368 67 HOH HOH . I 6 HOH A 69 369 34 HOH HOH . I 6 HOH A 70 370 36 HOH HOH . I 6 HOH A 71 371 38 HOH HOH . I 6 HOH A 72 372 83 HOH HOH . I 6 HOH A 73 373 73 HOH HOH . I 6 HOH A 74 374 48 HOH HOH . I 6 HOH A 75 375 15 HOH HOH . I 6 HOH A 76 376 63 HOH HOH . I 6 HOH A 77 377 124 HOH HOH . I 6 HOH A 78 378 80 HOH HOH . I 6 HOH A 79 379 59 HOH HOH . I 6 HOH A 80 380 31 HOH HOH . I 6 HOH A 81 381 49 HOH HOH . I 6 HOH A 82 382 154 HOH HOH . I 6 HOH A 83 383 84 HOH HOH . I 6 HOH A 84 384 74 HOH HOH . I 6 HOH A 85 385 85 HOH HOH . I 6 HOH A 86 386 20 HOH HOH . I 6 HOH A 87 387 26 HOH HOH . I 6 HOH A 88 388 37 HOH HOH . I 6 HOH A 89 389 13 HOH HOH . I 6 HOH A 90 390 91 HOH HOH . I 6 HOH A 91 391 62 HOH HOH . I 6 HOH A 92 392 52 HOH HOH . I 6 HOH A 93 393 23 HOH HOH . I 6 HOH A 94 394 2 HOH HOH . I 6 HOH A 95 395 100 HOH HOH . I 6 HOH A 96 396 57 HOH HOH . I 6 HOH A 97 397 126 HOH HOH . I 6 HOH A 98 398 50 HOH HOH . I 6 HOH A 99 399 138 HOH HOH . I 6 HOH A 100 400 4 HOH HOH . I 6 HOH A 101 401 66 HOH HOH . I 6 HOH A 102 402 133 HOH HOH . I 6 HOH A 103 403 44 HOH HOH . I 6 HOH A 104 404 69 HOH HOH . I 6 HOH A 105 405 157 HOH HOH . I 6 HOH A 106 406 128 HOH HOH . I 6 HOH A 107 407 72 HOH HOH . I 6 HOH A 108 408 107 HOH HOH . I 6 HOH A 109 409 161 HOH HOH . I 6 HOH A 110 410 141 HOH HOH . I 6 HOH A 111 411 108 HOH HOH . I 6 HOH A 112 412 115 HOH HOH . I 6 HOH A 113 413 94 HOH HOH . I 6 HOH A 114 414 152 HOH HOH . I 6 HOH A 115 415 135 HOH HOH . I 6 HOH A 116 416 45 HOH HOH . I 6 HOH A 117 417 127 HOH HOH . I 6 HOH A 118 418 160 HOH HOH . I 6 HOH A 119 419 60 HOH HOH . I 6 HOH A 120 420 140 HOH HOH . I 6 HOH A 121 421 149 HOH HOH . I 6 HOH A 122 422 118 HOH HOH . I 6 HOH A 123 423 153 HOH HOH . I 6 HOH A 124 424 54 HOH HOH . I 6 HOH A 125 425 114 HOH HOH . I 6 HOH A 126 426 156 HOH HOH . I 6 HOH A 127 427 99 HOH HOH . I 6 HOH A 128 428 123 HOH HOH . I 6 HOH A 129 429 77 HOH HOH . I 6 HOH A 130 430 131 HOH HOH . I 6 HOH A 131 431 105 HOH HOH . I 6 HOH A 132 432 136 HOH HOH . I 6 HOH A 133 433 145 HOH HOH . I 6 HOH A 134 434 92 HOH HOH . I 6 HOH A 135 435 159 HOH HOH . I 6 HOH A 136 436 147 HOH HOH . I 6 HOH A 137 437 155 HOH HOH . I 6 HOH A 138 438 61 HOH HOH . I 6 HOH A 139 439 137 HOH HOH . I 6 HOH A 140 440 109 HOH HOH . I 6 HOH A 141 441 139 HOH HOH . I 6 HOH A 142 442 148 HOH HOH . I 6 HOH A 143 443 51 HOH HOH . I 6 HOH A 144 444 106 HOH HOH . I 6 HOH A 145 445 113 HOH HOH . I 6 HOH A 146 446 86 HOH HOH . I 6 HOH A 147 447 134 HOH HOH . I 6 HOH A 148 448 158 HOH HOH . I 6 HOH A 149 449 42 HOH HOH . I 6 HOH A 150 450 144 HOH HOH . I 6 HOH A 151 451 112 HOH HOH . I 6 HOH A 152 452 95 HOH HOH . I 6 HOH A 153 453 163 HOH HOH . I 6 HOH A 154 454 103 HOH HOH . I 6 HOH A 155 455 79 HOH HOH . I 6 HOH A 156 456 93 HOH HOH . I 6 HOH A 157 457 90 HOH HOH . I 6 HOH A 158 458 82 HOH HOH . I 6 HOH A 159 459 117 HOH HOH . I 6 HOH A 160 460 98 HOH HOH . I 6 HOH A 161 461 71 HOH HOH . I 6 HOH A 162 462 121 HOH HOH . I 6 HOH A 163 463 78 HOH HOH . I 6 HOH A 164 464 120 HOH HOH . I 6 HOH A 165 465 116 HOH HOH . I 6 HOH A 166 466 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 2 -56.102 44.52 -5.819 1 45.46 ? C1 MLI 202 A 1 HETATM 2 C C2 MLI . . . C 2 -57.34 44.826 -6.742 1 57 ? C2 MLI 202 A 1 HETATM 3 C C3 MLI . . . C 2 -54.66 45.192 -5.94 1 34.67 ? C3 MLI 202 A 1 HETATM 4 O O6 MLI . . . C 2 -57.518 43.988 -7.712 1 47.92 ? O6 MLI 202 A 1 HETATM 5 O O7 MLI . . . C 2 -58.148 45.797 -6.553 1 51.47 ? O7 MLI 202 A 1 HETATM 6 O O8 MLI . . . C 2 -53.799 44.531 -6.66 1 49.24 ? O8 MLI 202 A 1 HETATM 7 O O9 MLI . . . C 2 -54.316 46.295 -5.41 1 59.29 ? O9 MLI 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #