data_7KH7
#
_model_server_result.job_id            rI7oOAGsw0fa2QJCwSTmBA 
_model_server_result.datetime_utc      '2024-11-16 01:26:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kh7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    7KH7 
#
_exptl.entry_id    7KH7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              199.187 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-hydroxy-2-methyl[1,3]thiazolo[4,5-d]pyrimidine-5,7(4H,6H)-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KH7 
_cell.length_a            69.922 
_cell.length_b            92.085 
_cell.length_c            101.645 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KH7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 73 A ALA 73 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc2 A OE1 GLU 98 A GLU 98 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc3 A OD1 ASP 190 A ASP 190 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc4 A OD2 ASP 190 A ASP 190 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc5 A OE2 GLU 194 A GLU 194 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc6 E MG MG . A MG 503 1_555 L O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc7 E MG MG . A MG 503 1_555 L O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc8 E MG MG . A MG 503 1_555 H O01 WBY . B WBY 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc9 E MG MG . A MG 503 1_555 H O13 WBY . B WBY 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc10 E MG MG . A MG 503 1_555 M O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc11 F MG MG . A MG 504 1_555 L O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc12 F MG MG . A MG 504 1_555 L O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc13 F MG MG . A MG 504 1_555 H O12 WBY . B WBY 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc14 F MG MG . A MG 504 1_555 H O13 WBY . B WBY 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc15 B OD1 ASP 190 B ASP 190 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc16 B OD2 ASP 190 B ASP 190 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc17 B OE2 GLU 194 B GLU 194 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
metalc ? metalc18 I O01 WBY . B WBY 402 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc19 I O13 WBY . B WBY 402 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc20 I O12 WBY . B WBY 402 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc21 I O13 WBY . B WBY 402 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc22 J MG MG . B MG 403 1_555 M O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc23 J MG MG . B MG 403 1_555 M O HOH . B HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc24 J MG MG . B MG 403 1_555 M O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc25 K MG MG . B MG 404 1_555 M O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc26 K MG MG . B MG 404 1_555 M O HOH . B HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
#
_chem_comp.formula           'C6 H5 N3 O3 S' 
_chem_comp.formula_weight    199.187 
_chem_comp.id                WBY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-hydroxy-2-methyl[1,3]thiazolo[4,5-d]pyrimidine-5,7(4H,6H)-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O13 N03 WBY sing 510 n n 
O12 C04 WBY doub 511 n n 
N03 C04 WBY sing 512 n n 
N03 C02 WBY sing 513 n n 
C04 N05 WBY sing 514 n n 
O01 C02 WBY doub 515 n n 
C02 C07 WBY sing 516 n n 
N05 C06 WBY sing 517 n n 
C07 C06 WBY doub 518 n y 
C07 S08 WBY sing 519 n y 
C06 N11 WBY sing 520 n y 
N11 C09 WBY doub 521 n y 
S08 C09 WBY sing 522 n y 
C09 C10 WBY sing 523 n n 
C10 H1 WBY sing 524 n n 
C10 H2 WBY sing 525 n n 
C10 H3 WBY sing 526 n n 
N05 H4 WBY sing 527 n n 
O13 H5 WBY sing 528 n n 
#
_atom_sites.entry_id                     7KH7 
_atom_sites.fract_transf_matrix[1][1]    0.014302 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009838 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 501 501 NAP NAP . 
D 3 NDP A 1 502 501 NDP NDP . 
E 4 MG A 1 503 3 MG MG . 
F 4 MG A 1 504 4 MG MG . 
G 4 MG A 1 505 5 MG MG . 
H 5 WBY B 1 401 401 WBY WBY . 
I 5 WBY B 1 402 401 WBY WBY . 
J 4 MG B 1 403 1 MG MG . 
K 4 MG B 1 404 2 MG MG . 
L 6 HOH A 1 601 8 HOH HOH . 
L 6 HOH A 2 602 7 HOH HOH . 
L 6 HOH A 3 603 55 HOH HOH . 
L 6 HOH A 4 604 58 HOH HOH . 
L 6 HOH A 5 605 57 HOH HOH . 
L 6 HOH A 6 606 35 HOH HOH . 
L 6 HOH A 7 607 2 HOH HOH . 
L 6 HOH A 8 608 50 HOH HOH . 
L 6 HOH A 9 609 9 HOH HOH . 
L 6 HOH A 10 610 22 HOH HOH . 
L 6 HOH A 11 611 51 HOH HOH . 
L 6 HOH A 12 612 31 HOH HOH . 
L 6 HOH A 13 613 4 HOH HOH . 
L 6 HOH A 14 614 27 HOH HOH . 
L 6 HOH A 15 615 45 HOH HOH . 
L 6 HOH A 16 616 56 HOH HOH . 
L 6 HOH A 17 617 10 HOH HOH . 
L 6 HOH A 18 618 37 HOH HOH . 
L 6 HOH A 19 619 20 HOH HOH . 
L 6 HOH A 20 620 47 HOH HOH . 
L 6 HOH A 21 621 40 HOH HOH . 
L 6 HOH A 22 622 59 HOH HOH . 
L 6 HOH A 23 623 48 HOH HOH . 
L 6 HOH A 24 624 29 HOH HOH . 
L 6 HOH A 25 625 54 HOH HOH . 
L 6 HOH A 26 626 38 HOH HOH . 
L 6 HOH A 27 627 33 HOH HOH . 
L 6 HOH A 28 628 32 HOH HOH . 
L 6 HOH A 29 629 52 HOH HOH . 
M 6 HOH B 1 501 13 HOH HOH . 
M 6 HOH B 2 502 18 HOH HOH . 
M 6 HOH B 3 503 30 HOH HOH . 
M 6 HOH B 4 504 41 HOH HOH . 
M 6 HOH B 5 505 25 HOH HOH . 
M 6 HOH B 6 506 23 HOH HOH . 
M 6 HOH B 7 507 24 HOH HOH . 
M 6 HOH B 8 508 6 HOH HOH . 
M 6 HOH B 9 509 39 HOH HOH . 
M 6 HOH B 10 510 14 HOH HOH . 
M 6 HOH B 11 511 3 HOH HOH . 
M 6 HOH B 12 512 34 HOH HOH . 
M 6 HOH B 13 513 17 HOH HOH . 
M 6 HOH B 14 514 15 HOH HOH . 
M 6 HOH B 15 515 43 HOH HOH . 
M 6 HOH B 16 516 5 HOH HOH . 
M 6 HOH B 17 517 12 HOH HOH . 
M 6 HOH B 18 518 44 HOH HOH . 
M 6 HOH B 19 519 49 HOH HOH . 
M 6 HOH B 20 520 11 HOH HOH . 
M 6 HOH B 21 521 19 HOH HOH . 
M 6 HOH B 22 522 28 HOH HOH . 
M 6 HOH B 23 523 16 HOH HOH . 
M 6 HOH B 24 524 1 HOH HOH . 
M 6 HOH B 25 525 26 HOH HOH . 
M 6 HOH B 26 526 61 HOH HOH . 
M 6 HOH B 27 527 62 HOH HOH . 
M 6 HOH B 28 528 60 HOH HOH . 
M 6 HOH B 29 529 53 HOH HOH . 
M 6 HOH B 30 530 21 HOH HOH . 
M 6 HOH B 31 531 46 HOH HOH . 
M 6 HOH B 32 532 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 WBY . . . H 5 1.349 -7.314 -14.23 1 54.54 ? C10 WBY 401 B 1 
HETATM 2 C C02 WBY . . . H 5 6.479 -9.11 -13.593 1 61.03 ? C02 WBY 401 B 1 
HETATM 3 C C04 WBY . . . H 5 7.663 -6.91 -13.43 1 51.55 ? C04 WBY 401 B 1 
HETATM 4 C C06 WBY . . . H 5 5.142 -6.969 -13.75 1 49.74 ? C06 WBY 401 B 1 
HETATM 5 C C07 WBY . . . H 5 5.155 -8.377 -13.754 1 63.05 ? C07 WBY 401 B 1 
HETATM 6 C C09 WBY . . . H 5 2.853 -7.503 -14.04 1 59.44 ? C09 WBY 401 B 1 
HETATM 7 N N03 WBY . . . H 5 7.695 -8.361 -13.436 1 54.4 ? N03 WBY 401 B 1 
HETATM 8 N N05 WBY . . . H 5 6.395 -6.206 -13.59 1 46.54 ? N05 WBY 401 B 1 
HETATM 9 N N11 WBY . . . H 5 3.759 -6.45 -13.923 1 48.52 ? N11 WBY 401 B 1 
HETATM 10 O O01 WBY . . . H 5 6.52 -10.294 -13.593 1 56.28 ? O01 WBY 401 B 1 
HETATM 11 O O12 WBY . . . H 5 8.663 -6.289 -13.304 1 63.53 ? O12 WBY 401 B 1 
HETATM 12 O O13 WBY . . . H 5 8.918 -9.033 -13.287 1 54.47 ? O13 WBY 401 B 1 
HETATM 13 S S08 WBY . . . H 5 3.65 -8.936 -13.943 1 57.54 ? S08 WBY 401 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           825 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#