data_7KHG # _model_server_result.job_id rxBNR4UC4JPv8CvQUXGWqg _model_server_result.datetime_utc '2024-10-11 00:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7khg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 7KHG # _exptl.entry_id 7KHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.815 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-{[6-(trifluoromethyl)pyridin-3-yl]methyl}pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.6 _cell.angle_gamma 90 _cell.entry_id 7KHG _cell.length_a 111.133 _cell.length_b 81.961 _cell.length_c 50.061 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H15 Cl F3 N5' _chem_comp.formula_weight 417.815 _chem_comp.id P31 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-{[6-(trifluoromethyl)pyridin-3-yl]methyl}pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F43 C40 P31 sing 237 n n C40 F42 P31 sing 238 n n C40 C35 P31 sing 239 n n C40 F41 P31 sing 240 n n C35 C36 P31 doub 241 n y C35 N34 P31 sing 242 n y C36 C38 P31 sing 243 n y N34 C32 P31 doub 244 n y C38 C29 P31 doub 245 n y C32 C29 P31 sing 246 n y C29 C26 P31 sing 247 n n C26 N24 P31 sing 248 n n N18 C16 P31 doub 249 n y N18 C19 P31 sing 250 n y C16 C15 P31 sing 251 n y N24 C19 P31 sing 252 n n C19 C20 P31 doub 253 n y C15 C12 P31 sing 254 n n C15 C22 P31 doub 255 n y C12 C11 P31 sing 256 n n C20 C22 P31 sing 257 n y C11 C7 P31 sing 258 n y C11 C30 P31 doub 259 n y C5 C7 P31 doub 260 n y C5 C1 P31 sing 261 n y CL1 C1 P31 sing 262 n n C7 C8 P31 sing 263 n y C1 C2 P31 doub 264 n y C30 N9 P31 sing 265 n y C8 N9 P31 sing 266 n y C8 N4 P31 doub 267 n y C2 N4 P31 sing 268 n y C2 H1 P31 sing 269 n n C5 H2 P31 sing 270 n n N9 H3 P31 sing 271 n n C12 H4 P31 sing 272 n n C12 H5 P31 sing 273 n n C16 H6 P31 sing 274 n n C20 H7 P31 sing 275 n n C22 H8 P31 sing 276 n n N24 H9 P31 sing 277 n n C26 H10 P31 sing 278 n n C26 H11 P31 sing 279 n n C30 H12 P31 sing 280 n n C32 H13 P31 sing 281 n n C36 H14 P31 sing 282 n n C38 H15 P31 sing 283 n n # _atom_sites.entry_id 7KHG _atom_sites.fract_transf_matrix[1][1] 0.008998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002855 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P31 A 1 1001 1 P31 P30 . C 3 HOH A 1 1101 2 HOH HOH . C 3 HOH A 2 1102 127 HOH HOH . C 3 HOH A 3 1103 52 HOH HOH . C 3 HOH A 4 1104 102 HOH HOH . C 3 HOH A 5 1105 138 HOH HOH . C 3 HOH A 6 1106 63 HOH HOH . C 3 HOH A 7 1107 119 HOH HOH . C 3 HOH A 8 1108 83 HOH HOH . C 3 HOH A 9 1109 92 HOH HOH . C 3 HOH A 10 1110 100 HOH HOH . C 3 HOH A 11 1111 5 HOH HOH . C 3 HOH A 12 1112 123 HOH HOH . C 3 HOH A 13 1113 89 HOH HOH . C 3 HOH A 14 1114 136 HOH HOH . C 3 HOH A 15 1115 130 HOH HOH . C 3 HOH A 16 1116 61 HOH HOH . C 3 HOH A 17 1117 12 HOH HOH . C 3 HOH A 18 1118 27 HOH HOH . C 3 HOH A 19 1119 114 HOH HOH . C 3 HOH A 20 1120 173 HOH HOH . C 3 HOH A 21 1121 150 HOH HOH . C 3 HOH A 22 1122 13 HOH HOH . C 3 HOH A 23 1123 185 HOH HOH . C 3 HOH A 24 1124 98 HOH HOH . C 3 HOH A 25 1125 175 HOH HOH . C 3 HOH A 26 1126 139 HOH HOH . C 3 HOH A 27 1127 34 HOH HOH . C 3 HOH A 28 1128 80 HOH HOH . C 3 HOH A 29 1129 178 HOH HOH . C 3 HOH A 30 1130 36 HOH HOH . C 3 HOH A 31 1131 32 HOH HOH . C 3 HOH A 32 1132 107 HOH HOH . C 3 HOH A 33 1133 25 HOH HOH . C 3 HOH A 34 1134 96 HOH HOH . C 3 HOH A 35 1135 31 HOH HOH . C 3 HOH A 36 1136 125 HOH HOH . C 3 HOH A 37 1137 67 HOH HOH . C 3 HOH A 38 1138 78 HOH HOH . C 3 HOH A 39 1139 30 HOH HOH . C 3 HOH A 40 1140 135 HOH HOH . C 3 HOH A 41 1141 73 HOH HOH . C 3 HOH A 42 1142 51 HOH HOH . C 3 HOH A 43 1143 7 HOH HOH . C 3 HOH A 44 1144 154 HOH HOH . C 3 HOH A 45 1145 137 HOH HOH . C 3 HOH A 46 1146 3 HOH HOH . C 3 HOH A 47 1147 179 HOH HOH . C 3 HOH A 48 1148 38 HOH HOH . C 3 HOH A 49 1149 86 HOH HOH . C 3 HOH A 50 1150 37 HOH HOH . C 3 HOH A 51 1151 121 HOH HOH . C 3 HOH A 52 1152 23 HOH HOH . C 3 HOH A 53 1153 128 HOH HOH . C 3 HOH A 54 1154 97 HOH HOH . C 3 HOH A 55 1155 166 HOH HOH . C 3 HOH A 56 1156 8 HOH HOH . C 3 HOH A 57 1157 82 HOH HOH . C 3 HOH A 58 1158 21 HOH HOH . C 3 HOH A 59 1159 182 HOH HOH . C 3 HOH A 60 1160 184 HOH HOH . C 3 HOH A 61 1161 160 HOH HOH . C 3 HOH A 62 1162 181 HOH HOH . C 3 HOH A 63 1163 133 HOH HOH . C 3 HOH A 64 1164 148 HOH HOH . C 3 HOH A 65 1165 76 HOH HOH . C 3 HOH A 66 1166 6 HOH HOH . C 3 HOH A 67 1167 176 HOH HOH . C 3 HOH A 68 1168 1 HOH HOH . C 3 HOH A 69 1169 163 HOH HOH . C 3 HOH A 70 1170 44 HOH HOH . C 3 HOH A 71 1171 116 HOH HOH . C 3 HOH A 72 1172 162 HOH HOH . C 3 HOH A 73 1173 177 HOH HOH . C 3 HOH A 74 1174 159 HOH HOH . C 3 HOH A 75 1175 72 HOH HOH . C 3 HOH A 76 1176 54 HOH HOH . C 3 HOH A 77 1177 131 HOH HOH . C 3 HOH A 78 1178 19 HOH HOH . C 3 HOH A 79 1179 15 HOH HOH . C 3 HOH A 80 1180 58 HOH HOH . C 3 HOH A 81 1181 20 HOH HOH . C 3 HOH A 82 1182 81 HOH HOH . C 3 HOH A 83 1183 106 HOH HOH . C 3 HOH A 84 1184 183 HOH HOH . C 3 HOH A 85 1185 145 HOH HOH . C 3 HOH A 86 1186 56 HOH HOH . C 3 HOH A 87 1187 22 HOH HOH . C 3 HOH A 88 1188 188 HOH HOH . C 3 HOH A 89 1189 16 HOH HOH . C 3 HOH A 90 1190 99 HOH HOH . C 3 HOH A 91 1191 9 HOH HOH . C 3 HOH A 92 1192 66 HOH HOH . C 3 HOH A 93 1193 10 HOH HOH . C 3 HOH A 94 1194 69 HOH HOH . C 3 HOH A 95 1195 142 HOH HOH . C 3 HOH A 96 1196 115 HOH HOH . C 3 HOH A 97 1197 39 HOH HOH . C 3 HOH A 98 1198 26 HOH HOH . C 3 HOH A 99 1199 143 HOH HOH . C 3 HOH A 100 1200 113 HOH HOH . C 3 HOH A 101 1201 14 HOH HOH . C 3 HOH A 102 1202 124 HOH HOH . C 3 HOH A 103 1203 149 HOH HOH . C 3 HOH A 104 1204 59 HOH HOH . C 3 HOH A 105 1205 46 HOH HOH . C 3 HOH A 106 1206 94 HOH HOH . C 3 HOH A 107 1207 48 HOH HOH . C 3 HOH A 108 1208 18 HOH HOH . C 3 HOH A 109 1209 49 HOH HOH . C 3 HOH A 110 1210 57 HOH HOH . C 3 HOH A 111 1211 108 HOH HOH . C 3 HOH A 112 1212 24 HOH HOH . C 3 HOH A 113 1213 17 HOH HOH . C 3 HOH A 114 1214 40 HOH HOH . C 3 HOH A 115 1215 95 HOH HOH . C 3 HOH A 116 1216 158 HOH HOH . C 3 HOH A 117 1217 53 HOH HOH . C 3 HOH A 118 1218 68 HOH HOH . C 3 HOH A 119 1219 35 HOH HOH . C 3 HOH A 120 1220 189 HOH HOH . C 3 HOH A 121 1221 45 HOH HOH . C 3 HOH A 122 1222 118 HOH HOH . C 3 HOH A 123 1223 157 HOH HOH . C 3 HOH A 124 1224 93 HOH HOH . C 3 HOH A 125 1225 28 HOH HOH . C 3 HOH A 126 1226 129 HOH HOH . C 3 HOH A 127 1227 191 HOH HOH . C 3 HOH A 128 1228 55 HOH HOH . C 3 HOH A 129 1229 70 HOH HOH . C 3 HOH A 130 1230 88 HOH HOH . C 3 HOH A 131 1231 84 HOH HOH . C 3 HOH A 132 1232 47 HOH HOH . C 3 HOH A 133 1233 11 HOH HOH . C 3 HOH A 134 1234 64 HOH HOH . C 3 HOH A 135 1235 153 HOH HOH . C 3 HOH A 136 1236 90 HOH HOH . C 3 HOH A 137 1237 146 HOH HOH . C 3 HOH A 138 1238 33 HOH HOH . C 3 HOH A 139 1239 141 HOH HOH . C 3 HOH A 140 1240 112 HOH HOH . C 3 HOH A 141 1241 109 HOH HOH . C 3 HOH A 142 1242 42 HOH HOH . C 3 HOH A 143 1243 65 HOH HOH . C 3 HOH A 144 1244 105 HOH HOH . C 3 HOH A 145 1245 186 HOH HOH . C 3 HOH A 146 1246 180 HOH HOH . C 3 HOH A 147 1247 111 HOH HOH . C 3 HOH A 148 1248 170 HOH HOH . C 3 HOH A 149 1249 43 HOH HOH . C 3 HOH A 150 1250 156 HOH HOH . C 3 HOH A 151 1251 174 HOH HOH . C 3 HOH A 152 1252 60 HOH HOH . C 3 HOH A 153 1253 134 HOH HOH . C 3 HOH A 154 1254 187 HOH HOH . C 3 HOH A 155 1255 120 HOH HOH . C 3 HOH A 156 1256 172 HOH HOH . C 3 HOH A 157 1257 147 HOH HOH . C 3 HOH A 158 1258 190 HOH HOH . C 3 HOH A 159 1259 171 HOH HOH . C 3 HOH A 160 1260 151 HOH HOH . C 3 HOH A 161 1261 4 HOH HOH . C 3 HOH A 162 1262 110 HOH HOH . C 3 HOH A 163 1263 155 HOH HOH . C 3 HOH A 164 1264 140 HOH HOH . C 3 HOH A 165 1265 117 HOH HOH . C 3 HOH A 166 1266 50 HOH HOH . C 3 HOH A 167 1267 122 HOH HOH . C 3 HOH A 168 1268 144 HOH HOH . C 3 HOH A 169 1269 161 HOH HOH . C 3 HOH A 170 1270 152 HOH HOH . C 3 HOH A 171 1271 132 HOH HOH . C 3 HOH A 172 1272 103 HOH HOH . C 3 HOH A 173 1273 77 HOH HOH . C 3 HOH A 174 1274 85 HOH HOH . C 3 HOH A 175 1275 91 HOH HOH . C 3 HOH A 176 1276 167 HOH HOH . C 3 HOH A 177 1277 104 HOH HOH . C 3 HOH A 178 1278 168 HOH HOH . C 3 HOH A 179 1279 87 HOH HOH . C 3 HOH A 180 1280 62 HOH HOH . C 3 HOH A 181 1281 74 HOH HOH . C 3 HOH A 182 1282 126 HOH HOH . C 3 HOH A 183 1283 169 HOH HOH . C 3 HOH A 184 1284 29 HOH HOH . C 3 HOH A 185 1285 165 HOH HOH . C 3 HOH A 186 1286 164 HOH HOH . C 3 HOH A 187 1287 41 HOH HOH . C 3 HOH A 188 1288 75 HOH HOH . C 3 HOH A 189 1289 79 HOH HOH . C 3 HOH A 190 1290 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P31 . . . B 2 13.007 3.056 11.064 1 27.5 ? C1 P31 1001 A 1 HETATM 2 C C2 P31 . . . B 2 12.999 2.663 12.394 1 26.4 ? C2 P31 1001 A 1 HETATM 3 N N4 P31 . . . B 2 13.218 1.406 12.84 1 27.19 ? N4 P31 1001 A 1 HETATM 4 C C5 P31 . . . B 2 13.255 2.111 10.077 1 24.53 ? C5 P31 1001 A 1 HETATM 5 C C7 P31 . . . B 2 13.486 0.791 10.488 1 24.15 ? C7 P31 1001 A 1 HETATM 6 C C8 P31 . . . B 2 13.453 0.528 11.851 1 25.48 ? C8 P31 1001 A 1 HETATM 7 N N9 P31 . . . B 2 13.7 -0.801 12.025 1 25.33 ? N9 P31 1001 A 1 HETATM 8 C C11 P31 . . . B 2 13.77 -0.438 9.82 1 25.3 ? C11 P31 1001 A 1 HETATM 9 C C12 P31 . . . B 2 13.898 -0.625 8.346 1 23.87 ? C12 P31 1001 A 1 HETATM 10 C C15 P31 . . . B 2 14.449 -1.995 8.094 1 23.54 ? C15 P31 1001 A 1 HETATM 11 C C16 P31 . . . B 2 15.741 -2.177 7.629 1 25.1 ? C16 P31 1001 A 1 HETATM 12 N N18 P31 . . . B 2 16.298 -3.379 7.377 1 25.23 ? N18 P31 1001 A 1 HETATM 13 C C19 P31 . . . B 2 15.55 -4.489 7.588 1 25.98 ? C19 P31 1001 A 1 HETATM 14 C C20 P31 . . . B 2 14.24 -4.396 8.053 1 23.7 ? C20 P31 1001 A 1 HETATM 15 C C22 P31 . . . B 2 13.692 -3.143 8.303 1 24.66 ? C22 P31 1001 A 1 HETATM 16 N N24 P31 . . . B 2 16.079 -5.748 7.345 1 25.73 ? N24 P31 1001 A 1 HETATM 17 C C26 P31 . . . B 2 17.185 -5.882 6.426 1 26.16 ? C26 P31 1001 A 1 HETATM 18 C C29 P31 . . . B 2 18.495 -5.994 7.149 1 25.18 ? C29 P31 1001 A 1 HETATM 19 C C30 P31 . . . B 2 13.895 -1.397 10.81 1 24.88 ? C30 P31 1001 A 1 HETATM 20 C C32 P31 . . . B 2 19.69 -5.899 6.455 1 25.56 ? C32 P31 1001 A 1 HETATM 21 N N34 P31 . . . B 2 20.911 -5.991 7.015 1 26.39 ? N34 P31 1001 A 1 HETATM 22 C C35 P31 . . . B 2 20.963 -6.191 8.348 1 26.76 ? C35 P31 1001 A 1 HETATM 23 C C36 P31 . . . B 2 19.826 -6.302 9.139 1 24.14 ? C36 P31 1001 A 1 HETATM 24 C C38 P31 . . . B 2 18.581 -6.202 8.525 1 27.03 ? C38 P31 1001 A 1 HETATM 25 C C40 P31 . . . B 2 22.328 -6.296 8.951 1 29.35 ? C40 P31 1001 A 1 HETATM 26 F F41 P31 . . . B 2 22.379 -7.158 9.996 1 31.91 ? F41 P31 1001 A 1 HETATM 27 F F42 P31 . . . B 2 23.25 -6.741 8.061 1 29.59 ? F42 P31 1001 A 1 HETATM 28 F F43 P31 . . . B 2 22.809 -5.118 9.419 1 31.32 ? F43 P31 1001 A 1 HETATM 29 CL CL1 P31 . . . B 2 12.716 4.686 10.619 1 34.13 ? CL1 P31 1001 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #