data_7KHM # _model_server_result.job_id IBsffh2dokTfdHSIgvSRFA _model_server_result.datetime_utc '2024-10-11 19:17:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7khm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 7KHM # _exptl.entry_id 7KHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1005.943 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Palmitoyl-CoA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.23 _cell.angle_gamma 90 _cell.entry_id 7KHM _cell.length_a 53.529 _cell.length_b 114.61 _cell.length_c 83.596 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 128 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A SG CYS 138 A CYS 131 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A ND1 HIS 148 A HIS 141 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A SG CYS 149 A CYS 142 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A SG CYS 152 A CYS 145 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 A SG CYS 155 A CYS 148 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 A ND1 HIS 162 A HIS 155 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc8 A SG CYS 169 A CYS 162 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 B SG CYS 135 B CYS 128 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 B SG CYS 138 B CYS 131 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc11 B ND1 HIS 148 B HIS 141 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc12 B SG CYS 149 B CYS 142 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc13 B SG CYS 152 B CYS 145 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 B SG CYS 155 B CYS 148 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc15 B ND1 HIS 162 B HIS 155 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc16 B SG CYS 169 B CYS 162 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C37 H66 N7 O17 P3 S' _chem_comp.formula_weight 1005.943 _chem_comp.id PKZ _chem_comp.mon_nstd_flag . _chem_comp.name Palmitoyl-CoA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9A P3B PKZ doub 260 n n O2B C2B PKZ sing 261 n n P3B O3B PKZ sing 262 n n P3B O7A PKZ sing 263 n n P3B O8A PKZ sing 264 n n O3B C3B PKZ sing 265 n n C2B C3B PKZ sing 266 n n C2B C1B PKZ sing 267 n n C3B C4B PKZ sing 268 n n C8A N7A PKZ doub 269 n y C8A N9A PKZ sing 270 n y C1B N9A PKZ sing 271 n n C1B O4B PKZ sing 272 n n N7A C5A PKZ sing 273 n y C4B C5B PKZ sing 274 n n C4B O4B PKZ sing 275 n n N9A C4A PKZ sing 276 n y C5B O5B PKZ sing 277 n n C5A C4A PKZ doub 278 n y C5A C6A PKZ sing 279 n y C16 C15 PKZ sing 280 n n C4A N3A PKZ sing 281 n y N6A C6A PKZ sing 282 n n C6A N1A PKZ doub 283 n y O5B P1A PKZ sing 284 n n N3A C2A PKZ doub 285 n y O5A P2A PKZ doub 286 n n O4A P2A PKZ sing 287 n n C14 C15 PKZ sing 288 n n C14 C13 PKZ sing 289 n n N1A C2A PKZ sing 290 n y P2A O3A PKZ sing 291 n n P2A O6A PKZ sing 292 n n P1A O3A PKZ sing 293 n n P1A O2A PKZ doub 294 n n P1A O1A PKZ sing 295 n n C13 C12 PKZ sing 296 n n O6A CCP PKZ sing 297 n n C12 C11 PKZ sing 298 n n CEP CBP PKZ sing 299 n n CCP CBP PKZ sing 300 n n CAP CBP PKZ sing 301 n n CAP OAP PKZ sing 302 n n CAP C9P PKZ sing 303 n n CBP CDP PKZ sing 304 n n O9P C9P PKZ doub 305 n n C11 C10 PKZ sing 306 n n C9P N8P PKZ sing 307 n n C10 C9 PKZ sing 308 n n N8P C7P PKZ sing 309 n n C9 C8 PKZ sing 310 n n C7P C6P PKZ sing 311 n n C6P C5P PKZ sing 312 n n C8 C7 PKZ sing 313 n n C6 C7 PKZ sing 314 n n C6 C5 PKZ sing 315 n n C4 C5 PKZ sing 316 n n C4 C3 PKZ sing 317 n n C5P N4P PKZ sing 318 n n C5P O5P PKZ doub 319 n n N4P C3P PKZ sing 320 n n O1 C1 PKZ doub 321 n n C2P C3P PKZ sing 322 n n C2P S1P PKZ sing 323 n n C3 C2 PKZ sing 324 n n C1 S1P PKZ sing 325 n n C1 C2 PKZ sing 326 n n C3 H1 PKZ sing 327 n n C3 H2 PKZ sing 328 n n C10 H3 PKZ sing 329 n n C10 H4 PKZ sing 330 n n C8 H5 PKZ sing 331 n n C8 H6 PKZ sing 332 n n C7 H7 PKZ sing 333 n n C7 H8 PKZ sing 334 n n C5 H9 PKZ sing 335 n n C5 H10 PKZ sing 336 n n C11 H11 PKZ sing 337 n n C11 H12 PKZ sing 338 n n C13 H13 PKZ sing 339 n n C13 H14 PKZ sing 340 n n C16 H15 PKZ sing 341 n n C16 H16 PKZ sing 342 n n C16 H17 PKZ sing 343 n n C15 H18 PKZ sing 344 n n C15 H19 PKZ sing 345 n n C14 H20 PKZ sing 346 n n C14 H21 PKZ sing 347 n n C2A H22 PKZ sing 348 n n N6A H23 PKZ sing 349 n n N6A H24 PKZ sing 350 n n C8A H25 PKZ sing 351 n n C1B H26 PKZ sing 352 n n C2B H27 PKZ sing 353 n n O2B H28 PKZ sing 354 n n C3B H29 PKZ sing 355 n n O7A H30 PKZ sing 356 n n O8A H31 PKZ sing 357 n n C4B H32 PKZ sing 358 n n C5B H33 PKZ sing 359 n n C5B H34 PKZ sing 360 n n O1A H35 PKZ sing 361 n n O4A H36 PKZ sing 362 n n CCP H37 PKZ sing 363 n n CCP H38 PKZ sing 364 n n CDP H39 PKZ sing 365 n n CDP H40 PKZ sing 366 n n CDP H41 PKZ sing 367 n n CEP H42 PKZ sing 368 n n CEP H43 PKZ sing 369 n n CEP H44 PKZ sing 370 n n CAP H45 PKZ sing 371 n n OAP H46 PKZ sing 372 n n N8P H47 PKZ sing 373 n n C7P H48 PKZ sing 374 n n C7P H49 PKZ sing 375 n n C6P H50 PKZ sing 376 n n C6P H51 PKZ sing 377 n n N4P H52 PKZ sing 378 n n C3P H53 PKZ sing 379 n n C3P H54 PKZ sing 380 n n C2P H55 PKZ sing 381 n n C2P H56 PKZ sing 382 n n C2 H57 PKZ sing 383 n n C2 H58 PKZ sing 384 n n C4 H59 PKZ sing 385 n n C4 H60 PKZ sing 386 n n C6 H61 PKZ sing 387 n n C6 H62 PKZ sing 388 n n C9 H63 PKZ sing 389 n n C9 H64 PKZ sing 390 n n C12 H65 PKZ sing 391 n n C12 H66 PKZ sing 392 n n # _atom_sites.entry_id 7KHM _atom_sites.fract_transf_matrix[1][1] 0.018681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000402 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 2 ZN A 1 402 402 ZN ZN . E 3 PKZ A 1 403 501 PKZ LIG . F 4 PO4 A 1 404 1 PO4 PO4 . G 2 ZN B 1 401 401 ZN ZN . H 2 ZN B 1 402 402 ZN ZN . I 3 PKZ B 1 403 501 PKZ LIG . J 5 HOH A 1 501 3 HOH HOH . J 5 HOH A 2 502 14 HOH HOH . J 5 HOH A 3 503 27 HOH HOH . J 5 HOH A 4 504 12 HOH HOH . J 5 HOH A 5 505 15 HOH HOH . J 5 HOH A 6 506 16 HOH HOH . J 5 HOH A 7 507 26 HOH HOH . J 5 HOH A 8 508 13 HOH HOH . K 5 HOH B 1 501 1 HOH HOH . K 5 HOH B 2 502 21 HOH HOH . K 5 HOH B 3 503 2 HOH HOH . K 5 HOH B 4 504 25 HOH HOH . K 5 HOH B 5 505 17 HOH HOH . K 5 HOH B 6 506 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A PKZ . . . I 3 18.799 2.096 30.832 1 188.69 ? N1A PKZ 403 B 1 HETATM 2 C C2A PKZ . . . I 3 19.554 3.095 31.27 1 188.47 ? C2A PKZ 403 B 1 HETATM 3 N N3A PKZ . . . I 3 19.367 4.344 30.879 1 187.81 ? N3A PKZ 403 B 1 HETATM 4 C C4A PKZ . . . I 3 18.386 4.653 30.007 1 185.5 ? C4A PKZ 403 B 1 HETATM 5 C C5A PKZ . . . I 3 17.577 3.641 29.527 1 186.18 ? C5A PKZ 403 B 1 HETATM 6 C C6A PKZ . . . I 3 17.814 2.327 29.972 1 189.03 ? C6A PKZ 403 B 1 HETATM 7 N N6A PKZ . . . I 3 16.983 1.234 29.491 1 199.08 ? N6A PKZ 403 B 1 HETATM 8 N N7A PKZ . . . I 3 16.702 4.215 28.692 1 177.21 ? N7A PKZ 403 B 1 HETATM 9 C C8A PKZ . . . I 3 16.957 5.516 28.657 1 174.78 ? C8A PKZ 403 B 1 HETATM 10 N N9A PKZ . . . I 3 17.975 5.811 29.442 1 179.62 ? N9A PKZ 403 B 1 HETATM 11 C C1B PKZ . . . I 3 18.516 7.141 29.648 1 180.94 ? C1B PKZ 403 B 1 HETATM 12 C C2B PKZ . . . I 3 18.969 7.375 31.199 1 177.43 ? C2B PKZ 403 B 1 HETATM 13 O O2B PKZ . . . I 3 17.882 7.963 31.974 1 177.66 ? O2B PKZ 403 B 1 HETATM 14 C C3B PKZ . . . I 3 19.987 8.192 31.176 1 177.18 ? C3B PKZ 403 B 1 HETATM 15 O O3B PKZ . . . I 3 19.71 9.411 31.997 1 166.63 ? O3B PKZ 403 B 1 HETATM 16 P P3B PKZ . . . I 3 20.481 9.533 33.451 1 167.52 ? P3B PKZ 403 B 1 HETATM 17 O O7A PKZ . . . I 3 21.615 10.519 33.342 1 159.23 ? O7A PKZ 403 B 1 HETATM 18 O O8A PKZ . . . I 3 19.506 9.984 34.515 1 157.33 -1 O8A PKZ 403 B 1 HETATM 19 O O9A PKZ . . . I 3 21.036 8.181 33.82 1 169.66 ? O9A PKZ 403 B 1 HETATM 20 C C4B PKZ . . . I 3 20.202 8.568 29.691 1 191.84 ? C4B PKZ 403 B 1 HETATM 21 O O4B PKZ . . . I 3 19.586 7.366 28.941 1 188 ? O4B PKZ 403 B 1 HETATM 22 C C5B PKZ . . . I 3 21.578 8.744 29.443 1 183.71 ? C5B PKZ 403 B 1 HETATM 23 O O5B PKZ . . . I 3 22.034 7.867 28.432 1 190.59 ? O5B PKZ 403 B 1 HETATM 24 P P1A PKZ . . . I 3 22.776 8.519 27.094 1 199.3 ? P1A PKZ 403 B 1 HETATM 25 O O1A PKZ . . . I 3 24.16 8.997 27.46 1 187.88 -1 O1A PKZ 403 B 1 HETATM 26 O O2A PKZ . . . I 3 21.971 9.692 26.592 1 180.69 ? O2A PKZ 403 B 1 HETATM 27 O O3A PKZ . . . I 3 22.899 7.338 25.924 1 199.29 ? O3A PKZ 403 B 1 HETATM 28 P P2A PKZ . . . I 3 22.112 5.868 25.975 1 195.97 ? P2A PKZ 403 B 1 HETATM 29 O O4A PKZ . . . I 3 22.14 5.154 24.474 1 199.04 ? O4A PKZ 403 B 1 HETATM 30 O O5A PKZ . . . I 3 22.827 4.97 26.96 1 199.72 -1 O5A PKZ 403 B 1 HETATM 31 O O6A PKZ . . . I 3 20.678 6.051 26.415 1 192.89 ? O6A PKZ 403 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #