data_7KHN
#
_model_server_result.job_id            6PNrDBzqYftuwh_XiS30EQ 
_model_server_result.datetime_utc      '2024-11-26 04:03:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7khn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    7KHN 
#
_exptl.entry_id    7KHN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              162.232 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KHN 
_cell.length_a            81.486 
_cell.length_b            81.486 
_cell.length_c            166.304 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KHN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    'P 4w 2c' 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C10 H14 N2' 
_chem_comp.formula_weight    162.232 
_chem_comp.id                NCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(S)-(-)-NICOTINE;3-[(2S)-1-METHYL-2-PYRROLIDINYL] PYRIDINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 NCT doub 328 n y 
N1 C5 NCT sing 329 n y 
C1 C2 NCT sing 330 n y 
C1 HC1 NCT sing 331 n n 
C2 C3 NCT doub 332 n y 
C2 C6 NCT sing 333 n n 
C3 C4 NCT sing 334 n y 
C3 HC3 NCT sing 335 n n 
C4 C5 NCT doub 336 n y 
C4 HC4 NCT sing 337 n n 
C5 HC5 NCT sing 338 n n 
N2 C6 NCT sing 339 n n 
N2 C9 NCT sing 340 n n 
N2 C10 NCT sing 341 n n 
C6 C7 NCT sing 342 n n 
C6 HC6 NCT sing 343 n n 
C7 C8 NCT sing 344 n n 
C7 HC71 NCT sing 345 n n 
C7 HC72 NCT sing 346 n n 
C8 C9 NCT sing 347 n n 
C8 HC81 NCT sing 348 n n 
C8 HC82 NCT sing 349 n n 
C9 HC91 NCT sing 350 n n 
C9 HC92 NCT sing 351 n n 
C10 H101 NCT sing 352 n n 
C10 H102 NCT sing 353 n n 
C10 H103 NCT sing 354 n n 
#
_atom_sites.entry_id                     7KHN 
_atom_sites.fract_transf_matrix[1][1]    0.012272 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 501 1 FAD FVN . 
C 3 NCT A 1 502 1 NCT NCT . 
D 3 NCT A 1 503 2 NCT NCT . 
E 4 HOH A 1 601 54 HOH HOH . 
E 4 HOH A 2 602 46 HOH HOH . 
E 4 HOH A 3 603 45 HOH HOH . 
E 4 HOH A 4 604 71 HOH HOH . 
E 4 HOH A 5 605 75 HOH HOH . 
E 4 HOH A 6 606 6 HOH HOH . 
E 4 HOH A 7 607 35 HOH HOH . 
E 4 HOH A 8 608 61 HOH HOH . 
E 4 HOH A 9 609 15 HOH HOH . 
E 4 HOH A 10 610 81 HOH HOH . 
E 4 HOH A 11 611 21 HOH HOH . 
E 4 HOH A 12 612 10 HOH HOH . 
E 4 HOH A 13 613 11 HOH HOH . 
E 4 HOH A 14 614 65 HOH HOH . 
E 4 HOH A 15 615 17 HOH HOH . 
E 4 HOH A 16 616 3 HOH HOH . 
E 4 HOH A 17 617 8 HOH HOH . 
E 4 HOH A 18 618 51 HOH HOH . 
E 4 HOH A 19 619 24 HOH HOH . 
E 4 HOH A 20 620 83 HOH HOH . 
E 4 HOH A 21 621 40 HOH HOH . 
E 4 HOH A 22 622 39 HOH HOH . 
E 4 HOH A 23 623 58 HOH HOH . 
E 4 HOH A 24 624 2 HOH HOH . 
E 4 HOH A 25 625 57 HOH HOH . 
E 4 HOH A 26 626 38 HOH HOH . 
E 4 HOH A 27 627 19 HOH HOH . 
E 4 HOH A 28 628 84 HOH HOH . 
E 4 HOH A 29 629 13 HOH HOH . 
E 4 HOH A 30 630 70 HOH HOH . 
E 4 HOH A 31 631 31 HOH HOH . 
E 4 HOH A 32 632 43 HOH HOH . 
E 4 HOH A 33 633 55 HOH HOH . 
E 4 HOH A 34 634 30 HOH HOH . 
E 4 HOH A 35 635 18 HOH HOH . 
E 4 HOH A 36 636 44 HOH HOH . 
E 4 HOH A 37 637 1 HOH HOH . 
E 4 HOH A 38 638 48 HOH HOH . 
E 4 HOH A 39 639 25 HOH HOH . 
E 4 HOH A 40 640 64 HOH HOH . 
E 4 HOH A 41 641 41 HOH HOH . 
E 4 HOH A 42 642 14 HOH HOH . 
E 4 HOH A 43 643 34 HOH HOH . 
E 4 HOH A 44 644 16 HOH HOH . 
E 4 HOH A 45 645 7 HOH HOH . 
E 4 HOH A 46 646 82 HOH HOH . 
E 4 HOH A 47 647 20 HOH HOH . 
E 4 HOH A 48 648 23 HOH HOH . 
E 4 HOH A 49 649 4 HOH HOH . 
E 4 HOH A 50 650 12 HOH HOH . 
E 4 HOH A 51 651 33 HOH HOH . 
E 4 HOH A 52 652 62 HOH HOH . 
E 4 HOH A 53 653 28 HOH HOH . 
E 4 HOH A 54 654 86 HOH HOH . 
E 4 HOH A 55 655 37 HOH HOH . 
E 4 HOH A 56 656 56 HOH HOH . 
E 4 HOH A 57 657 87 HOH HOH . 
E 4 HOH A 58 658 60 HOH HOH . 
E 4 HOH A 59 659 5 HOH HOH . 
E 4 HOH A 60 660 9 HOH HOH . 
E 4 HOH A 61 661 53 HOH HOH . 
E 4 HOH A 62 662 67 HOH HOH . 
E 4 HOH A 63 663 36 HOH HOH . 
E 4 HOH A 64 664 68 HOH HOH . 
E 4 HOH A 65 665 32 HOH HOH . 
E 4 HOH A 66 666 27 HOH HOH . 
E 4 HOH A 67 667 50 HOH HOH . 
E 4 HOH A 68 668 85 HOH HOH . 
E 4 HOH A 69 669 22 HOH HOH . 
E 4 HOH A 70 670 29 HOH HOH . 
E 4 HOH A 71 671 79 HOH HOH . 
E 4 HOH A 72 672 52 HOH HOH . 
E 4 HOH A 73 673 59 HOH HOH . 
E 4 HOH A 74 674 49 HOH HOH . 
E 4 HOH A 75 675 66 HOH HOH . 
E 4 HOH A 76 676 47 HOH HOH . 
E 4 HOH A 77 677 80 HOH HOH . 
E 4 HOH A 78 678 72 HOH HOH . 
E 4 HOH A 79 679 26 HOH HOH . 
E 4 HOH A 80 680 74 HOH HOH . 
E 4 HOH A 81 681 63 HOH HOH . 
E 4 HOH A 82 682 73 HOH HOH . 
E 4 HOH A 83 683 76 HOH HOH . 
E 4 HOH A 84 684 42 HOH HOH . 
E 4 HOH A 85 685 69 HOH HOH . 
E 4 HOH A 86 686 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NCT . . . C 3 -1.386 28.84 -20.235 1 56.15 ? N1 NCT 502 A 1 
HETATM 2 C C1 NCT . . . C 3 -2.358 28.189 -19.556 1 50.79 ? C1 NCT 502 A 1 
HETATM 3 C C2 NCT . . . C 3 -2.799 28.548 -18.291 1 54.13 ? C2 NCT 502 A 1 
HETATM 4 C C3 NCT . . . C 3 -2.209 29.65 -17.685 1 58.61 ? C3 NCT 502 A 1 
HETATM 5 C C4 NCT . . . C 3 -1.201 30.342 -18.353 1 57.82 ? C4 NCT 502 A 1 
HETATM 6 C C5 NCT . . . C 3 -0.828 29.905 -19.614 1 53.54 ? C5 NCT 502 A 1 
HETATM 7 N N2 NCT . . . C 3 -3.737 27.689 -16.161 1 56.8 ? N2 NCT 502 A 1 
HETATM 8 C C6 NCT . . . C 3 -3.892 27.785 -17.583 1 54.97 ? C6 NCT 502 A 1 
HETATM 9 C C7 NCT . . . C 3 -5.351 28.546 -17.703 1 54.2 ? C7 NCT 502 A 1 
HETATM 10 C C8 NCT . . . C 3 -5.942 28.397 -16.309 1 58.67 ? C8 NCT 502 A 1 
HETATM 11 C C9 NCT . . . C 3 -5.062 27.364 -15.631 1 55.59 ? C9 NCT 502 A 1 
HETATM 12 C C10 NCT . . . C 3 -2.804 26.608 -15.886 1 50.43 ? C10 NCT 502 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#