data_7KHO
#
_model_server_result.job_id            YpcmutATvQL2EDzGLLKYzw 
_model_server_result.datetime_utc      '2024-11-22 17:54:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kho 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    7KHO 
#
_exptl.entry_id    7KHO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KHO 
_cell.length_a            87.398 
_cell.length_b            134.565 
_cell.length_c            168.684 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KHO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     7KHO 
_atom_sites.fract_transf_matrix[1][1]    0.011442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NCT A 1 501 1 NCT NCT . 
F 3 FAD A 1 502 1 FAD FVN . 
G 2 NCT B 1 501 2 NCT NCT . 
H 3 FAD B 1 502 2 FAD FVN . 
I 2 NCT C 1 501 3 NCT NCT . 
J 3 FAD C 1 502 3 FAD FVN . 
K 2 NCT D 1 501 4 NCT NCT . 
L 3 FAD D 1 502 4 FAD FVN . 
M 4 HOH A 1 601 1 HOH HOH . 
M 4 HOH A 2 602 7 HOH HOH . 
M 4 HOH A 3 603 2 HOH HOH . 
M 4 HOH A 4 604 4 HOH HOH . 
M 4 HOH A 5 605 5 HOH HOH . 
M 4 HOH A 6 606 6 HOH HOH . 
M 4 HOH A 7 607 3 HOH HOH . 
N 4 HOH B 1 601 11 HOH HOH . 
N 4 HOH B 2 602 9 HOH HOH . 
N 4 HOH B 3 603 10 HOH HOH . 
N 4 HOH B 4 604 12 HOH HOH . 
N 4 HOH B 5 605 14 HOH HOH . 
N 4 HOH B 6 606 13 HOH HOH . 
N 4 HOH B 7 607 15 HOH HOH . 
N 4 HOH B 8 608 8 HOH HOH . 
O 4 HOH C 1 601 17 HOH HOH . 
O 4 HOH C 2 602 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . H 3 33.225 10.219 -39.274 1 39.44 ? PA FAD 502 B 1 
HETATM 2 O O1A FAD . . . H 3 33.939 10.507 -38.004 1 51.74 ? O1A FAD 502 B 1 
HETATM 3 O O2A FAD . . . H 3 31.949 11.077 -39.517 1 40.76 ? O2A FAD 502 B 1 
HETATM 4 O O5B FAD . . . H 3 32.913 8.644 -39.38 1 39.07 ? O5B FAD 502 B 1 
HETATM 5 C C5B FAD . . . H 3 33.677 7.687 -38.678 1 44.47 ? C5B FAD 502 B 1 
HETATM 6 C C4B FAD . . . H 3 32.752 6.647 -38.058 1 48.1 ? C4B FAD 502 B 1 
HETATM 7 O O4B FAD . . . H 3 33.556 5.536 -37.744 1 50.16 ? O4B FAD 502 B 1 
HETATM 8 C C3B FAD . . . H 3 32.158 7.139 -36.748 1 50.01 ? C3B FAD 502 B 1 
HETATM 9 O O3B FAD . . . H 3 30.758 6.898 -36.765 1 44.15 ? O3B FAD 502 B 1 
HETATM 10 C C2B FAD . . . H 3 32.782 6.281 -35.687 1 45.05 ? C2B FAD 502 B 1 
HETATM 11 O O2B FAD . . . H 3 31.79 6.011 -34.714 1 42.8 ? O2B FAD 502 B 1 
HETATM 12 C C1B FAD . . . H 3 33.235 5.044 -36.456 1 47.52 ? C1B FAD 502 B 1 
HETATM 13 N N9A FAD . . . H 3 34.408 4.297 -35.936 1 40.68 ? N9A FAD 502 B 1 
HETATM 14 C C8A FAD . . . H 3 35.613 4.761 -35.456 1 45.78 ? C8A FAD 502 B 1 
HETATM 15 N N7A FAD . . . H 3 36.398 3.717 -35.076 1 44.63 ? N7A FAD 502 B 1 
HETATM 16 C C5A FAD . . . H 3 35.708 2.569 -35.301 1 39.98 ? C5A FAD 502 B 1 
HETATM 17 C C6A FAD . . . H 3 36.024 1.213 -35.097 1 43.57 ? C6A FAD 502 B 1 
HETATM 18 N N6A FAD . . . H 3 37.226 0.804 -34.578 1 50.55 ? N6A FAD 502 B 1 
HETATM 19 N N1A FAD . . . H 3 35.046 0.284 -35.453 1 44.59 ? N1A FAD 502 B 1 
HETATM 20 C C2A FAD . . . H 3 33.823 0.649 -35.979 1 44.42 ? C2A FAD 502 B 1 
HETATM 21 N N3A FAD . . . H 3 33.547 1.983 -36.165 1 37.81 ? N3A FAD 502 B 1 
HETATM 22 C C4A FAD . . . H 3 34.462 2.922 -35.834 1 37.79 ? C4A FAD 502 B 1 
HETATM 23 N N1 FAD . . . H 3 31.317 19.474 -42.282 1 51.98 ? N1 FAD 502 B 1 
HETATM 24 C C2 FAD . . . H 3 30.369 20.15 -43.053 1 51.84 ? C2 FAD 502 B 1 
HETATM 25 O O2 FAD . . . H 3 30.105 19.737 -44.192 1 51.13 ? O2 FAD 502 B 1 
HETATM 26 N N3 FAD . . . H 3 29.707 21.285 -42.572 1 55.38 ? N3 FAD 502 B 1 
HETATM 27 C C4 FAD . . . H 3 30.002 21.747 -41.296 1 49.91 ? C4 FAD 502 B 1 
HETATM 28 O O4 FAD . . . H 3 29.445 22.748 -40.824 1 50.74 ? O4 FAD 502 B 1 
HETATM 29 C C4X FAD . . . H 3 30.945 21.087 -40.518 1 48.67 ? C4X FAD 502 B 1 
HETATM 30 N N5 FAD . . . H 3 31.238 21.551 -39.234 1 57.97 ? N5 FAD 502 B 1 
HETATM 31 C C5X FAD . . . H 3 31.956 20.796 -38.338 1 52.57 ? C5X FAD 502 B 1 
HETATM 32 C C6 FAD . . . H 3 31.932 21.082 -36.973 1 51.15 ? C6 FAD 502 B 1 
HETATM 33 C C7 FAD . . . H 3 32.455 20.158 -36.061 1 53.95 ? C7 FAD 502 B 1 
HETATM 34 C C7M FAD . . . H 3 32.41 20.512 -34.584 1 49.54 ? C7M FAD 502 B 1 
HETATM 35 C C8 FAD . . . H 3 32.998 18.944 -36.532 1 49.22 ? C8 FAD 502 B 1 
HETATM 36 C C8M FAD . . . H 3 33.589 17.873 -35.636 1 51.03 ? C8M FAD 502 B 1 
HETATM 37 C C9 FAD . . . H 3 33.008 18.692 -37.896 1 48.34 ? C9 FAD 502 B 1 
HETATM 38 C C9A FAD . . . H 3 32.493 19.593 -38.804 1 49.66 ? C9A FAD 502 B 1 
HETATM 39 N N10 FAD . . . H 3 32.526 19.351 -40.174 1 48.63 ? N10 FAD 502 B 1 
HETATM 40 C C10 FAD . . . H 3 31.599 19.951 -41.009 1 47.54 ? C10 FAD 502 B 1 
HETATM 41 C C1' FAD . . . H 3 33.252 18.143 -40.633 1 45.11 ? C1' FAD 502 B 1 
HETATM 42 C C2' FAD . . . H 3 32.384 16.943 -40.381 1 45.26 ? C2' FAD 502 B 1 
HETATM 43 O O2' FAD . . . H 3 31.559 16.822 -39.263 1 56.71 ? O2' FAD 502 B 1 
HETATM 44 C C3' FAD . . . H 3 32.978 15.605 -40.884 1 44.86 ? C3' FAD 502 B 1 
HETATM 45 O O3' FAD . . . H 3 33.974 15.953 -41.836 1 39.09 ? O3' FAD 502 B 1 
HETATM 46 C C4' FAD . . . H 3 32.257 14.485 -41.621 1 38.14 ? C4' FAD 502 B 1 
HETATM 47 O O4' FAD . . . H 3 31.21 13.987 -40.83 1 49.67 ? O4' FAD 502 B 1 
HETATM 48 C C5' FAD . . . H 3 33.325 13.411 -41.878 1 37.18 ? C5' FAD 502 B 1 
HETATM 49 O O5' FAD . . . H 3 32.762 12.131 -42.061 1 38.23 ? O5' FAD 502 B 1 
HETATM 50 P P FAD . . . H 3 33.641 10.748 -42.051 1 36.85 ? P FAD 502 B 1 
HETATM 51 O O1P FAD . . . H 3 32.804 9.576 -42.48 1 30.36 ? O1P FAD 502 B 1 
HETATM 52 O O2P FAD . . . H 3 34.809 10.946 -43.052 1 39.48 ? O2P FAD 502 B 1 
HETATM 53 O O3P FAD . . . H 3 34.104 10.506 -40.679 1 50.27 ? O3P FAD 502 B 1 
HETATM 54 H H51A FAD . . . H 3 34.269 7.264 -39.271 1 53.64 ? H51A FAD 502 B 1 
HETATM 55 H H52A FAD . . . H 3 34.165 8.115 -37.999 1 53.64 ? H52A FAD 502 B 1 
HETATM 56 H HO3A FAD . . . H 3 30.387 7.377 -36.194 1 53.26 ? HO3A FAD 502 B 1 
HETATM 57 H HO2A FAD . . . H 3 32.12 6.087 -33.953 1 51.64 ? HO2A FAD 502 B 1 
HETATM 58 H H1B FAD . . . H 3 32.052 5.799 -36.028 1 54.34 ? H1B FAD 502 B 1 
HETATM 59 H H8A FAD . . . H 3 35.999 5.521 -35.827 1 55.22 ? H8A FAD 502 B 1 
HETATM 60 H H61A FAD . . . H 3 37.305 -0.055 -34.673 1 60.94 ? H61A FAD 502 B 1 
HETATM 61 H H62A FAD . . . H 3 37.873 1.202 -34.998 1 60.94 ? H62A FAD 502 B 1 
HETATM 62 H H2A FAD . . . H 3 33.195 0.002 -36.204 1 53.58 ? H2A FAD 502 B 1 
HETATM 63 H HN3 FAD . . . H 3 29.121 21.694 -43.064 1 66.73 ? HN3 FAD 502 B 1 
HETATM 64 H H6 FAD . . . H 3 31.57 21.883 -36.671 1 61.66 ? H6 FAD 502 B 1 
HETATM 65 H HM71 FAD . . . H 3 31.988 19.82 -34.109 1 59.73 ? HM71 FAD 502 B 1 
HETATM 66 H HM72 FAD . . . H 3 31.928 21.31 -34.469 1 59.73 ? HM72 FAD 502 B 1 
HETATM 67 H HM73 FAD . . . H 3 33.285 20.625 -34.263 1 59.73 ? HM73 FAD 502 B 1 
HETATM 68 H HM81 FAD . . . H 3 33.965 17.195 -36.165 1 61.51 ? HM81 FAD 502 B 1 
HETATM 69 H HM82 FAD . . . H 3 32.913 17.51 -35.095 1 61.51 ? HM82 FAD 502 B 1 
HETATM 70 H HM83 FAD . . . H 3 34.255 18.252 -35.093 1 61.51 ? HM83 FAD 502 B 1 
HETATM 71 H H9 FAD . . . H 3 33.372 17.894 -38.206 1 58.29 ? H9 FAD 502 B 1 
HETATM 72 H "H1'1" FAD . . . H 3 34.059 18.058 -40.161 1 54.41 ? "H1'1" FAD 502 B 1 
HETATM 73 H "H1'2" FAD . . . H 3 33.439 18.214 -41.551 1 54.41 ? "H1'2" FAD 502 B 1 
HETATM 74 H H2' FAD . . . H 3 31.736 17.272 -40.975 1 54.59 ? H2' FAD 502 B 1 
HETATM 75 H HO2' FAD . . . H 3 30.787 17.062 -39.46 1 68.33 ? HO2' FAD 502 B 1 
HETATM 76 H H3' FAD . . . H 3 33.249 15.187 -40.088 1 54.11 ? H3' FAD 502 B 1 
HETATM 77 H HO3' FAD . . . H 3 33.638 15.968 -42.596 1 47.18 ? HO3' FAD 502 B 1 
HETATM 78 H H4' FAD . . . H 3 31.921 14.805 -42.437 1 46.04 ? H4' FAD 502 B 1 
HETATM 79 H HO4' FAD . . . H 3 30.69 13.544 -41.305 1 59.88 ? HO4' FAD 502 B 1 
HETATM 80 H "H5'1" FAD . . . H 3 33.806 13.643 -42.651 1 44.89 ? "H5'1" FAD 502 B 1 
HETATM 81 H "H5'2" FAD . . . H 3 33.909 13.383 -41.143 1 44.89 ? "H5'2" FAD 502 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           81 
#