data_7KHR
#
_model_server_result.job_id            MP0mcD1zrk3VYRLylSAklQ 
_model_server_result.datetime_utc      '2024-10-20 19:06:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7khr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CB","auth_seq_id":201}' 
#
_entry.id    7KHR 
#
_exptl.entry_id    7KHR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          22 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    32-meric 
_pdbx_struct_assembly.oligomeric_count      32 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 22 LA N N 
? 22 MA N N 
? 22 NA N N 
? 22 OA N N 
? 22 WA N N 
? 22 XA N N 
? 22 YA N N 
? 22 CB N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
17 oligosaccharide 
18 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 17 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 17 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 17 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 17 5 4 MAN MAN C1 O1 . O2 HO2 . sing 
5 ? 17 6 5 MAN MAN C1 O1 . O2 HO2 . sing 
6 ? 17 7 6 GLC MAN C1 O1 . O3 HO3 . sing 
7 ? 17 8 7 GLC GLC C1 O1 . O3 HO3 . sing 
8 ? 17 9 8 GLC GLC C1 O1 . O2 HO2 . sing 
9 ? 18 2 1 MAN MAN C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
17 n GA NAG 1 t 1 NAG t 1 NAG 
17 n GA NAG 2 t 2 NAG t 2 NAG 
17 n GA BMA 3 t 3 BMA t 3 BMA 
17 n GA MAN 4 t 4 MAN t 4 MAN 
17 n GA MAN 5 t 5 MAN t 5 MAN 
17 n GA MAN 6 t 6 MAN t 6 MAN 
17 n GA GLC 7 t 7 GLC t 7 GLC 
17 n GA GLC 8 t 8 GLC t 8 GLC 
17 n GA GLC 9 t 9 GLC t 9 GLC 
18 n HA MAN 1 Q 1 MAN t 10 MAN 
18 n HA MAN 2 Q 2 MAN t 11 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 U SG CYS 369 s CYS 369 1_555 U SG CYS 416 s CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 U ND2 ASN 258 s ASN 258 1_555 VA C1 NAG . s NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 U ND2 ASN 271 s ASN 271 1_555 PA C1 NAG . s NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 U ND2 ASN 301 s ASN 301 1_555 RA C1 NAG . s NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
covale ? covale4 U ND2 ASN 348 s ASN 348 1_555 SA C1 NAG . s NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale5 U ND2 ASN 355 s ASN 355 1_555 TA C1 NAG . s NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? 
covale ? covale6 GA O4 NAG . t NAG 1 1_555 GA C1 NAG . t NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale7 GA O4 NAG . t NAG 2 1_555 GA C1 BMA . t BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 GA O3 BMA . t BMA 3 1_555 GA C1 MAN . t MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale9 GA O2 MAN . t MAN 4 1_555 GA C1 MAN . t MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale10 GA O2 MAN . t MAN 5 1_555 GA C1 MAN . t MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale11 GA O3 MAN . t MAN 6 1_555 GA C1 GLC . t GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale12 GA O3 GLC . t GLC 7 1_555 GA C1 GLC . t GLC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale13 GA O2 GLC . t GLC 8 1_555 GA C1 GLC . t GLC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale14 HA O6 MAN . Q MAN 1 1_555 HA C1 MAN . Q MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 C OG1 THR 257 C THR 257 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 C OE1 GLU 283 C GLU 283 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
metalc ? metalc3 C OE2 GLU 283 C GLU 283 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc4 IA MG MG . C MG 701 1_555 JA O3B ADP . C ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     7KHR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
IA 19 MG C 1 701 1 MG MG . 
JA 20 ADP C 1 702 2 ADP ADP . 
KA 21 WJP a 1 901 46 WJP WJP . 
LA 22 POV b 1 301 7 POV POV . 
MA 22 POV b 1 302 8 POV POV . 
NA 22 POV s 1 501 2 POV POV . 
OA 22 POV s 1 502 3 POV POV . 
PA 23 NAG s 1 503 501 NAG NAG . 
QA 23 NAG s 1 504 502 NAG NAG . 
RA 23 NAG s 1 505 503 NAG NAG . 
SA 23 NAG s 1 506 504 NAG NAG . 
TA 23 NAG s 1 507 505 NAG NAG . 
UA 23 NAG s 1 508 506 NAG NAG . 
VA 23 NAG s 1 509 507 NAG NAG . 
WA 22 POV r 1 401 1 POV POV . 
XA 22 POV r 1 402 4 POV POV . 
YA 22 POV r 1 403 5 POV POV . 
ZA 24 OLA r 1 404 102 OLA OLA . 
AB 25 WEV g 1 201 2 WEV OCN . 
BB 25 WEV g 1 202 3 WEV OCN . 
CB 22 POV l 1 201 6 POV POV . 
DB 25 WEV l 1 202 4 WEV OCN . 
EB 25 WEV m 1 201 5 WEV OCN . 
FB 25 WEV o 1 201 6 WEV OCN . 
GB 25 WEV p 1 201 7 WEV OCN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . CB 22 276.255 244.91 130.431 1 42.46 ? N POV 201 l 1 
HETATM 2 P P POV . . . CB 22 271.555 245.307 130.306 1 42.46 ? P POV 201 l 1 
HETATM 3 C C1 POV . . . CB 22 269.075 244.593 130.598 1 42.46 ? C1 POV 201 l 1 
HETATM 4 C C2 POV . . . CB 22 267.932 244.55 131.604 1 42.46 ? C2 POV 201 l 1 
HETATM 5 C C3 POV . . . CB 22 266.938 243.468 131.19 1 42.46 ? C3 POV 201 l 1 
HETATM 6 C C210 POV . . . CB 22 261.188 242.488 138.816 1 42.46 ? C210 POV 201 l 1 
HETATM 7 C C310 POV . . . CB 22 263.055 234.636 139.081 1 42.46 ? C310 POV 201 l 1 
HETATM 8 C C11 POV . . . CB 22 273.936 245.05 131.329 1 42.46 ? C11 POV 201 l 1 
HETATM 9 O O11 POV . . . CB 22 270.241 245.003 131.25 1 42.46 ? O11 POV 201 l 1 
HETATM 10 C C211 POV . . . CB 22 259.977 242.124 139.669 1 42.46 ? C211 POV 201 l 1 
HETATM 11 C C12 POV . . . CB 22 274.923 245.459 130.234 1 42.46 ? C12 POV 201 l 1 
HETATM 12 O O12 POV . . . CB 22 272.806 245.863 131.221 1 42.46 ? O12 POV 201 l 1 
HETATM 13 C C212 POV . . . CB 22 259.644 240.646 139.47 1 42.46 ? C212 POV 201 l 1 
HETATM 14 C C13 POV . . . CB 22 276.831 245.445 131.648 1 42.46 ? C13 POV 201 l 1 
HETATM 15 O O13 POV . . . CB 22 271.195 246.333 129.26 1 42.46 ? O13 POV 201 l 1 
HETATM 16 C C14 POV . . . CB 22 277.092 245.288 129.311 1 42.46 ? C14 POV 201 l 1 
HETATM 17 O O14 POV . . . CB 22 271.972 244.029 129.622 1 42.46 ? O14 POV 201 l 1 
HETATM 18 C C15 POV . . . CB 22 276.214 243.461 130.499 1 42.46 ? C15 POV 201 l 1 
HETATM 19 C C21 POV . . . CB 22 267.575 246.626 132.671 1 42.46 ? C21 POV 201 l 1 
HETATM 20 O O21 POV . . . CB 22 267.28 245.785 131.594 1 42.46 ? O21 POV 201 l 1 
HETATM 21 C C22 POV . . . CB 22 266.566 247.697 133.077 1 42.46 ? C22 POV 201 l 1 
HETATM 22 O O22 POV . . . CB 22 268.594 246.512 133.263 1 42.46 ? O22 POV 201 l 1 
HETATM 23 C C23 POV . . . CB 22 265.134 247.176 132.994 1 42.46 ? C23 POV 201 l 1 
HETATM 24 C C24 POV . . . CB 22 264.324 247.444 134.262 1 42.46 ? C24 POV 201 l 1 
HETATM 25 C C25 POV . . . CB 22 263.296 246.346 134.527 1 42.46 ? C25 POV 201 l 1 
HETATM 26 C C26 POV . . . CB 22 263.169 246.012 136.012 1 42.46 ? C26 POV 201 l 1 
HETATM 27 C C27 POV . . . CB 22 262.107 244.947 136.275 1 42.46 ? C27 POV 201 l 1 
HETATM 28 C C28 POV . . . CB 22 262.504 244.025 137.426 1 42.46 ? C28 POV 201 l 1 
HETATM 29 C C29 POV . . . CB 22 261.284 243.685 138.277 1 42.46 ? C29 POV 201 l 1 
HETATM 30 C C31 POV . . . CB 22 265.471 242.308 132.63 1 42.46 ? C31 POV 201 l 1 
HETATM 31 O O31 POV . . . CB 22 266.793 242.575 132.255 1 42.46 ? O31 POV 201 l 1 
HETATM 32 C C32 POV . . . CB 22 265.179 241.125 133.543 1 42.46 ? C32 POV 201 l 1 
HETATM 33 O O32 POV . . . CB 22 264.583 242.996 132.262 1 42.46 ? O32 POV 201 l 1 
HETATM 34 C C33 POV . . . CB 22 264.048 241.414 134.524 1 42.46 ? C33 POV 201 l 1 
HETATM 35 C C34 POV . . . CB 22 264.489 241.171 135.964 1 42.46 ? C34 POV 201 l 1 
HETATM 36 C C35 POV . . . CB 22 263.47 240.361 136.758 1 42.46 ? C35 POV 201 l 1 
HETATM 37 C C36 POV . . . CB 22 264.128 239.178 137.459 1 42.46 ? C36 POV 201 l 1 
HETATM 38 C C37 POV . . . CB 22 263.149 238.393 138.325 1 42.46 ? C37 POV 201 l 1 
HETATM 39 C C38 POV . . . CB 22 263.128 236.91 137.966 1 42.46 ? C38 POV 201 l 1 
HETATM 40 C C39 POV . . . CB 22 263.668 236.034 139.094 1 42.46 ? C39 POV 201 l 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#