data_7KHR # _model_server_result.job_id 8CP5NTNPBsIxdWbydTthWQ _model_server_result.datetime_utc '2024-10-20 19:06:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7khr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":403}' # _entry.id 7KHR # _exptl.entry_id 7KHR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 22 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 32-meric _pdbx_struct_assembly.oligomeric_count 32 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 22 LA N N ? 22 MA N N ? 22 NA N N ? 22 OA N N ? 22 WA N N ? 22 XA N N ? 22 YA N N ? 22 CB N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 17 oligosaccharide 18 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 17 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 17 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 17 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 17 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 17 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 17 7 6 GLC MAN C1 O1 . O3 HO3 . sing 7 ? 17 8 7 GLC GLC C1 O1 . O3 HO3 . sing 8 ? 17 9 8 GLC GLC C1 O1 . O2 HO2 . sing 9 ? 18 2 1 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 17 n GA NAG 1 t 1 NAG t 1 NAG 17 n GA NAG 2 t 2 NAG t 2 NAG 17 n GA BMA 3 t 3 BMA t 3 BMA 17 n GA MAN 4 t 4 MAN t 4 MAN 17 n GA MAN 5 t 5 MAN t 5 MAN 17 n GA MAN 6 t 6 MAN t 6 MAN 17 n GA GLC 7 t 7 GLC t 7 GLC 17 n GA GLC 8 t 8 GLC t 8 GLC 17 n GA GLC 9 t 9 GLC t 9 GLC 18 n HA MAN 1 Q 1 MAN t 10 MAN 18 n HA MAN 2 Q 2 MAN t 11 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 U SG CYS 369 s CYS 369 1_555 U SG CYS 416 s CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 U ND2 ASN 258 s ASN 258 1_555 VA C1 NAG . s NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 U ND2 ASN 271 s ASN 271 1_555 PA C1 NAG . s NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 U ND2 ASN 301 s ASN 301 1_555 RA C1 NAG . s NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale4 U ND2 ASN 348 s ASN 348 1_555 SA C1 NAG . s NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 U ND2 ASN 355 s ASN 355 1_555 TA C1 NAG . s NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? covale ? covale6 GA O4 NAG . t NAG 1 1_555 GA C1 NAG . t NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 GA O4 NAG . t NAG 2 1_555 GA C1 BMA . t BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 GA O3 BMA . t BMA 3 1_555 GA C1 MAN . t MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 GA O2 MAN . t MAN 4 1_555 GA C1 MAN . t MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale10 GA O2 MAN . t MAN 5 1_555 GA C1 MAN . t MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 GA O3 MAN . t MAN 6 1_555 GA C1 GLC . t GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 GA O3 GLC . t GLC 7 1_555 GA C1 GLC . t GLC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 GA O2 GLC . t GLC 8 1_555 GA C1 GLC . t GLC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 HA O6 MAN . Q MAN 1 1_555 HA C1 MAN . Q MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 C OG1 THR 257 C THR 257 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 C OE1 GLU 283 C GLU 283 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc3 C OE2 GLU 283 C GLU 283 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 IA MG MG . C MG 701 1_555 JA O3B ADP . C ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 7KHR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 19 MG C 1 701 1 MG MG . JA 20 ADP C 1 702 2 ADP ADP . KA 21 WJP a 1 901 46 WJP WJP . LA 22 POV b 1 301 7 POV POV . MA 22 POV b 1 302 8 POV POV . NA 22 POV s 1 501 2 POV POV . OA 22 POV s 1 502 3 POV POV . PA 23 NAG s 1 503 501 NAG NAG . QA 23 NAG s 1 504 502 NAG NAG . RA 23 NAG s 1 505 503 NAG NAG . SA 23 NAG s 1 506 504 NAG NAG . TA 23 NAG s 1 507 505 NAG NAG . UA 23 NAG s 1 508 506 NAG NAG . VA 23 NAG s 1 509 507 NAG NAG . WA 22 POV r 1 401 1 POV POV . XA 22 POV r 1 402 4 POV POV . YA 22 POV r 1 403 5 POV POV . ZA 24 OLA r 1 404 102 OLA OLA . AB 25 WEV g 1 201 2 WEV OCN . BB 25 WEV g 1 202 3 WEV OCN . CB 22 POV l 1 201 6 POV POV . DB 25 WEV l 1 202 4 WEV OCN . EB 25 WEV m 1 201 5 WEV OCN . FB 25 WEV o 1 201 6 WEV OCN . GB 25 WEV p 1 201 7 WEV OCN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . YA 22 265.967 252.418 131.63 1 38.69 ? N POV 403 r 1 HETATM 2 P P POV . . . YA 22 265.638 254.55 136.066 1 38.69 ? P POV 403 r 1 HETATM 3 C C1 POV . . . YA 22 263.087 254.628 136.584 1 38.69 ? C1 POV 403 r 1 HETATM 4 C C2 POV . . . YA 22 262.182 253.419 136.789 1 38.69 ? C2 POV 403 r 1 HETATM 5 C C3 POV . . . YA 22 262.079 252.612 135.495 1 38.69 ? C3 POV 403 r 1 HETATM 6 C C210 POV . . . YA 22 253.771 246.422 142.28 1 38.69 ? C210 POV 403 r 1 HETATM 7 C C310 POV . . . YA 22 255.529 241.853 138.739 1 38.69 ? C310 POV 403 r 1 HETATM 8 C C11 POV . . . YA 22 265.78 254.042 133.503 1 38.69 ? C11 POV 403 r 1 HETATM 9 O O11 POV . . . YA 22 264.354 254.291 137.06 1 38.69 ? O11 POV 403 r 1 HETATM 10 C C211 POV . . . YA 22 253.045 245.497 141.309 1 38.69 ? C211 POV 403 r 1 HETATM 11 C C311 POV . . . YA 22 254.287 241.073 139.167 1 38.69 ? C311 POV 403 r 1 HETATM 12 C C12 POV . . . YA 22 266.644 253.019 132.766 1 38.69 ? C12 POV 403 r 1 HETATM 13 O O12 POV . . . YA 22 265.54 253.531 134.78 1 38.69 ? O12 POV 403 r 1 HETATM 14 C C212 POV . . . YA 22 252.05 244.649 142.099 1 38.69 ? C212 POV 403 r 1 HETATM 15 C C312 POV . . . YA 22 254.152 239.747 138.422 1 38.69 ? C312 POV 403 r 1 HETATM 16 C C13 POV . . . YA 22 266.853 251.437 131.036 1 38.69 ? C13 POV 403 r 1 HETATM 17 O O13 POV . . . YA 22 266.919 254.29 136.816 1 38.69 ? O13 POV 403 r 1 HETATM 18 C C213 POV . . . YA 22 252.595 243.263 142.434 1 38.69 ? C213 POV 403 r 1 HETATM 19 C C313 POV . . . YA 22 253.49 238.652 139.257 1 38.69 ? C313 POV 403 r 1 HETATM 20 C C14 POV . . . YA 22 265.651 253.423 130.635 1 38.69 ? C14 POV 403 r 1 HETATM 21 O O14 POV . . . YA 22 265.613 255.974 135.575 1 38.69 ? O14 POV 403 r 1 HETATM 22 C C214 POV . . . YA 22 251.713 242.524 143.439 1 38.69 ? C214 POV 403 r 1 HETATM 23 C C314 POV . . . YA 22 253.232 237.385 138.442 1 38.69 ? C314 POV 403 r 1 HETATM 24 C C15 POV . . . YA 22 264.743 251.763 132.058 1 38.69 ? C15 POV 403 r 1 HETATM 25 C C315 POV . . . YA 22 253.16 236.126 139.303 1 38.69 ? C315 POV 403 r 1 HETATM 26 C C21 POV . . . YA 22 260.555 253.424 138.446 1 38.69 ? C21 POV 403 r 1 HETATM 27 O O21 POV . . . YA 22 260.92 253.868 137.175 1 38.69 ? O21 POV 403 r 1 HETATM 28 C C22 POV . . . YA 22 259.84 252.088 138.603 1 38.69 ? C22 POV 403 r 1 HETATM 29 O O22 POV . . . YA 22 260.802 254.085 139.395 1 38.69 ? O22 POV 403 r 1 HETATM 30 C C23 POV . . . YA 22 259.927 251.538 140.022 1 38.69 ? C23 POV 403 r 1 HETATM 31 C C24 POV . . . YA 22 258.547 251.15 140.543 1 38.69 ? C24 POV 403 r 1 HETATM 32 C C25 POV . . . YA 22 258.572 249.862 141.358 1 38.69 ? C25 POV 403 r 1 HETATM 33 C C26 POV . . . YA 22 257.228 249.602 142.029 1 38.69 ? C26 POV 403 r 1 HETATM 34 C C27 POV . . . YA 22 257.059 248.143 142.441 1 38.69 ? C27 POV 403 r 1 HETATM 35 C C28 POV . . . YA 22 255.649 247.858 142.948 1 38.69 ? C28 POV 403 r 1 HETATM 36 C C29 POV . . . YA 22 254.937 246.94 141.959 1 38.69 ? C29 POV 403 r 1 HETATM 37 C C31 POV . . . YA 22 260.535 250.943 134.917 1 38.69 ? C31 POV 403 r 1 HETATM 38 O O31 POV . . . YA 22 260.738 252.28 135.278 1 38.69 ? O31 POV 403 r 1 HETATM 39 C C32 POV . . . YA 22 259.277 250.218 135.393 1 38.69 ? C32 POV 403 r 1 HETATM 40 O O32 POV . . . YA 22 261.337 250.378 134.254 1 38.69 ? O32 POV 403 r 1 HETATM 41 C C33 POV . . . YA 22 259.566 248.866 136.043 1 38.69 ? C33 POV 403 r 1 HETATM 42 C C34 POV . . . YA 22 258.412 248.398 136.926 1 38.69 ? C34 POV 403 r 1 HETATM 43 C C35 POV . . . YA 22 258.559 246.944 137.369 1 38.69 ? C35 POV 403 r 1 HETATM 44 C C36 POV . . . YA 22 257.427 246.482 138.284 1 38.69 ? C36 POV 403 r 1 HETATM 45 C C37 POV . . . YA 22 256.824 245.16 137.818 1 38.69 ? C37 POV 403 r 1 HETATM 46 C C38 POV . . . YA 22 256.601 244.159 138.949 1 38.69 ? C38 POV 403 r 1 HETATM 47 C C39 POV . . . YA 22 255.307 243.365 138.762 1 38.69 ? C39 POV 403 r 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 91 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #