data_7KHR
#
_model_server_result.job_id            aJ5eTBBfZVnrRzxYuNcG1g 
_model_server_result.datetime_utc      '2024-10-20 19:10:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7khr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":508}' 
#
_entry.id    7KHR 
#
_exptl.entry_id    7KHR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          23 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    32-meric 
_pdbx_struct_assembly.oligomeric_count      32 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 23 PA N N 
? 23 QA N N 
? 23 RA N N 
? 23 SA N N 
? 23 TA N N 
? 23 UA N N 
? 23 VA N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
17 oligosaccharide 
18 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 17 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 17 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 17 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 17 5 4 MAN MAN C1 O1 . O2 HO2 . sing 
5 ? 17 6 5 MAN MAN C1 O1 . O2 HO2 . sing 
6 ? 17 7 6 GLC MAN C1 O1 . O3 HO3 . sing 
7 ? 17 8 7 GLC GLC C1 O1 . O3 HO3 . sing 
8 ? 17 9 8 GLC GLC C1 O1 . O2 HO2 . sing 
9 ? 18 2 1 MAN MAN C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
17 n GA NAG 1 t 1 NAG t 1 NAG 
17 n GA NAG 2 t 2 NAG t 2 NAG 
17 n GA BMA 3 t 3 BMA t 3 BMA 
17 n GA MAN 4 t 4 MAN t 4 MAN 
17 n GA MAN 5 t 5 MAN t 5 MAN 
17 n GA MAN 6 t 6 MAN t 6 MAN 
17 n GA GLC 7 t 7 GLC t 7 GLC 
17 n GA GLC 8 t 8 GLC t 8 GLC 
17 n GA GLC 9 t 9 GLC t 9 GLC 
18 n HA MAN 1 Q 1 MAN t 10 MAN 
18 n HA MAN 2 Q 2 MAN t 11 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 U SG CYS 369 s CYS 369 1_555 U SG CYS 416 s CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 U ND2 ASN 258 s ASN 258 1_555 VA C1 NAG . s NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 U ND2 ASN 271 s ASN 271 1_555 PA C1 NAG . s NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 U ND2 ASN 301 s ASN 301 1_555 RA C1 NAG . s NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
covale ? covale4 U ND2 ASN 348 s ASN 348 1_555 SA C1 NAG . s NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale5 U ND2 ASN 355 s ASN 355 1_555 TA C1 NAG . s NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? 
covale ? covale6 GA O4 NAG . t NAG 1 1_555 GA C1 NAG . t NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale7 GA O4 NAG . t NAG 2 1_555 GA C1 BMA . t BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 GA O3 BMA . t BMA 3 1_555 GA C1 MAN . t MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale9 GA O2 MAN . t MAN 4 1_555 GA C1 MAN . t MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale10 GA O2 MAN . t MAN 5 1_555 GA C1 MAN . t MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale11 GA O3 MAN . t MAN 6 1_555 GA C1 GLC . t GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale12 GA O3 GLC . t GLC 7 1_555 GA C1 GLC . t GLC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale13 GA O2 GLC . t GLC 8 1_555 GA C1 GLC . t GLC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale14 HA O6 MAN . Q MAN 1 1_555 HA C1 MAN . Q MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 C OG1 THR 257 C THR 257 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 C OE1 GLU 283 C GLU 283 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
metalc ? metalc3 C OE2 GLU 283 C GLU 283 1_555 IA MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc4 IA MG MG . C MG 701 1_555 JA O3B ADP . C ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7KHR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
IA 19 MG C 1 701 1 MG MG . 
JA 20 ADP C 1 702 2 ADP ADP . 
KA 21 WJP a 1 901 46 WJP WJP . 
LA 22 POV b 1 301 7 POV POV . 
MA 22 POV b 1 302 8 POV POV . 
NA 22 POV s 1 501 2 POV POV . 
OA 22 POV s 1 502 3 POV POV . 
PA 23 NAG s 1 503 501 NAG NAG . 
QA 23 NAG s 1 504 502 NAG NAG . 
RA 23 NAG s 1 505 503 NAG NAG . 
SA 23 NAG s 1 506 504 NAG NAG . 
TA 23 NAG s 1 507 505 NAG NAG . 
UA 23 NAG s 1 508 506 NAG NAG . 
VA 23 NAG s 1 509 507 NAG NAG . 
WA 22 POV r 1 401 1 POV POV . 
XA 22 POV r 1 402 4 POV POV . 
YA 22 POV r 1 403 5 POV POV . 
ZA 24 OLA r 1 404 102 OLA OLA . 
AB 25 WEV g 1 201 2 WEV OCN . 
BB 25 WEV g 1 202 3 WEV OCN . 
CB 22 POV l 1 201 6 POV POV . 
DB 25 WEV l 1 202 4 WEV OCN . 
EB 25 WEV m 1 201 5 WEV OCN . 
FB 25 WEV o 1 201 6 WEV OCN . 
GB 25 WEV p 1 201 7 WEV OCN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . UA 23 290.831 243.594 125.693 1 57.08 ? C1 NAG 508 s 1 
HETATM 2 C C2 NAG . . . UA 23 289.892 244.779 125.489 1 57.08 ? C2 NAG 508 s 1 
HETATM 3 C C3 NAG . . . UA 23 290.613 245.891 124.736 1 57.08 ? C3 NAG 508 s 1 
HETATM 4 C C4 NAG . . . UA 23 291.883 246.291 125.476 1 57.08 ? C4 NAG 508 s 1 
HETATM 5 C C5 NAG . . . UA 23 292.769 245.068 125.697 1 57.08 ? C5 NAG 508 s 1 
HETATM 6 C C6 NAG . . . UA 23 293.968 245.369 126.564 1 57.08 ? C6 NAG 508 s 1 
HETATM 7 C C7 NAG . . . UA 23 287.543 244.079 125.406 1 57.08 ? C7 NAG 508 s 1 
HETATM 8 C C8 NAG . . . UA 23 286.398 243.691 124.523 1 57.08 ? C8 NAG 508 s 1 
HETATM 9 N N2 NAG . . . UA 23 288.686 244.379 124.783 1 57.08 ? N2 NAG 508 s 1 
HETATM 10 O O1 NAG . . . UA 23 290.186 242.622 126.449 1 57.08 ? O1 NAG 508 s 1 
HETATM 11 O O4 NAG . . . UA 23 292.597 247.27 124.731 1 57.08 ? O4 NAG 508 s 1 
HETATM 12 O O5 NAG . . . UA 23 292.028 244.035 126.37 1 57.08 ? O5 NAG 508 s 1 
HETATM 13 O O6 NAG . . . UA 23 293.659 246.352 127.542 1 57.08 ? O6 NAG 508 s 1 
HETATM 14 O O7 NAG . . . UA 23 287.439 244.117 126.626 1 57.08 ? O7 NAG 508 s 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#