data_7KHZ # _model_server_result.job_id 9N_3Mg73J5up_tCJpinNwA _model_server_result.datetime_utc '2024-11-13 01:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7khz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7KHZ # _exptl.entry_id 7KHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KHZ _cell.length_a 44.42 _cell.length_b 88.31 _cell.length_c 125.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 49 A SER 70 1_555 B C7 IM2 . A IM2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? metalc ? metalc1 A NE2 HIS 17 A HIS 38 1_555 D ZN ZN . A ZN 303 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A NE2 HIS 161 A HIS 182 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A OE1 GLU 231 A GLU 252 1_555 D ZN ZN . A ZN 303 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 A OE2 GLU 231 A GLU 252 1_555 D ZN ZN . A ZN 303 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? # _chem_comp.formula 'C12 H19 N3 O4 S' _chem_comp.formula_weight 301.362 _chem_comp.id IM2 _chem_comp.mon_nstd_flag . _chem_comp.name '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'IMIPENEM, open form;N-FORMIMIDOYL-THIENAMYCINE, open form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 IM2 sing 160 n n C7 O7 IM2 doub 161 n n C7 H71 IM2 sing 162 n n C2 C3 IM2 doub 163 n n C2 S21 IM2 sing 164 n n C2 C1 IM2 sing 165 n n C6 C5 IM2 sing 166 n n C6 C61 IM2 sing 167 n n C6 H61A IM2 sing 168 n n C5 N4 IM2 sing 169 n n C5 C1 IM2 sing 170 n n C5 H51 IM2 sing 171 n n C3 N4 IM2 sing 172 n n C3 C31 IM2 sing 173 n n C61 O62 IM2 sing 174 n n C61 C62 IM2 sing 175 n n C61 H61 IM2 sing 176 n n O62 HO6 IM2 sing 177 n n C62 H621 IM2 sing 178 n n C62 H622 IM2 sing 179 n n C62 H623 IM2 sing 180 n n N4 H41 IM2 sing 181 n n C31 O31 IM2 doub 182 n n C31 O32 IM2 sing 183 n n O32 H321 IM2 sing 184 n n S21 C22 IM2 sing 185 n n C22 C23 IM2 sing 186 n n C22 H221 IM2 sing 187 n n C22 H222 IM2 sing 188 n n C23 N24 IM2 sing 189 n n C23 H231 IM2 sing 190 n n C23 H232 IM2 sing 191 n n N24 C25 IM2 sing 192 n n N24 H241 IM2 sing 193 n n C25 N26 IM2 doub 194 n n C25 H25 IM2 sing 195 n n N26 H26 IM2 sing 196 n n C1 H11 IM2 sing 197 n n C1 H12 IM2 sing 198 n n # _atom_sites.entry_id 7KHZ _atom_sites.fract_transf_matrix[1][1] 0.022512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IM2 A 1 301 301 IM2 IM2 . C 3 CL A 1 302 1 CL CL . D 4 ZN A 1 303 1 ZN ZN . E 5 HOH A 1 401 18 HOH HOH . E 5 HOH A 2 402 54 HOH HOH . E 5 HOH A 3 403 80 HOH HOH . E 5 HOH A 4 404 128 HOH HOH . E 5 HOH A 5 405 41 HOH HOH . E 5 HOH A 6 406 74 HOH HOH . E 5 HOH A 7 407 48 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 11 HOH HOH . E 5 HOH A 10 410 28 HOH HOH . E 5 HOH A 11 411 90 HOH HOH . E 5 HOH A 12 412 37 HOH HOH . E 5 HOH A 13 413 33 HOH HOH . E 5 HOH A 14 414 6 HOH HOH . E 5 HOH A 15 415 3 HOH HOH . E 5 HOH A 16 416 24 HOH HOH . E 5 HOH A 17 417 51 HOH HOH . E 5 HOH A 18 418 135 HOH HOH . E 5 HOH A 19 419 20 HOH HOH . E 5 HOH A 20 420 127 HOH HOH . E 5 HOH A 21 421 139 HOH HOH . E 5 HOH A 22 422 23 HOH HOH . E 5 HOH A 23 423 2 HOH HOH . E 5 HOH A 24 424 29 HOH HOH . E 5 HOH A 25 425 46 HOH HOH . E 5 HOH A 26 426 66 HOH HOH . E 5 HOH A 27 427 125 HOH HOH . E 5 HOH A 28 428 86 HOH HOH . E 5 HOH A 29 429 68 HOH HOH . E 5 HOH A 30 430 36 HOH HOH . E 5 HOH A 31 431 67 HOH HOH . E 5 HOH A 32 432 5 HOH HOH . E 5 HOH A 33 433 12 HOH HOH . E 5 HOH A 34 434 53 HOH HOH . E 5 HOH A 35 435 31 HOH HOH . E 5 HOH A 36 436 30 HOH HOH . E 5 HOH A 37 437 1 HOH HOH . E 5 HOH A 38 438 72 HOH HOH . E 5 HOH A 39 439 22 HOH HOH . E 5 HOH A 40 440 82 HOH HOH . E 5 HOH A 41 441 85 HOH HOH . E 5 HOH A 42 442 140 HOH HOH . E 5 HOH A 43 443 94 HOH HOH . E 5 HOH A 44 444 71 HOH HOH . E 5 HOH A 45 445 39 HOH HOH . E 5 HOH A 46 446 108 HOH HOH . E 5 HOH A 47 447 56 HOH HOH . E 5 HOH A 48 448 119 HOH HOH . E 5 HOH A 49 449 40 HOH HOH . E 5 HOH A 50 450 15 HOH HOH . E 5 HOH A 51 451 16 HOH HOH . E 5 HOH A 52 452 55 HOH HOH . E 5 HOH A 53 453 17 HOH HOH . E 5 HOH A 54 454 26 HOH HOH . E 5 HOH A 55 455 14 HOH HOH . E 5 HOH A 56 456 113 HOH HOH . E 5 HOH A 57 457 77 HOH HOH . E 5 HOH A 58 458 7 HOH HOH . E 5 HOH A 59 459 75 HOH HOH . E 5 HOH A 60 460 64 HOH HOH . E 5 HOH A 61 461 79 HOH HOH . E 5 HOH A 62 462 98 HOH HOH . E 5 HOH A 63 463 91 HOH HOH . E 5 HOH A 64 464 130 HOH HOH . E 5 HOH A 65 465 27 HOH HOH . E 5 HOH A 66 466 124 HOH HOH . E 5 HOH A 67 467 60 HOH HOH . E 5 HOH A 68 468 120 HOH HOH . E 5 HOH A 69 469 137 HOH HOH . E 5 HOH A 70 470 35 HOH HOH . E 5 HOH A 71 471 121 HOH HOH . E 5 HOH A 72 472 19 HOH HOH . E 5 HOH A 73 473 49 HOH HOH . E 5 HOH A 74 474 73 HOH HOH . E 5 HOH A 75 475 65 HOH HOH . E 5 HOH A 76 476 63 HOH HOH . E 5 HOH A 77 477 100 HOH HOH . E 5 HOH A 78 478 136 HOH HOH . E 5 HOH A 79 479 78 HOH HOH . E 5 HOH A 80 480 92 HOH HOH . E 5 HOH A 81 481 57 HOH HOH . E 5 HOH A 82 482 70 HOH HOH . E 5 HOH A 83 483 9 HOH HOH . E 5 HOH A 84 484 42 HOH HOH . E 5 HOH A 85 485 111 HOH HOH . E 5 HOH A 86 486 13 HOH HOH . E 5 HOH A 87 487 45 HOH HOH . E 5 HOH A 88 488 131 HOH HOH . E 5 HOH A 89 489 50 HOH HOH . E 5 HOH A 90 490 109 HOH HOH . E 5 HOH A 91 491 32 HOH HOH . E 5 HOH A 92 492 88 HOH HOH . E 5 HOH A 93 493 129 HOH HOH . E 5 HOH A 94 494 95 HOH HOH . E 5 HOH A 95 495 76 HOH HOH . E 5 HOH A 96 496 34 HOH HOH . E 5 HOH A 97 497 43 HOH HOH . E 5 HOH A 98 498 107 HOH HOH . E 5 HOH A 99 499 117 HOH HOH . E 5 HOH A 100 500 44 HOH HOH . E 5 HOH A 101 501 10 HOH HOH . E 5 HOH A 102 502 99 HOH HOH . E 5 HOH A 103 503 4 HOH HOH . E 5 HOH A 104 504 141 HOH HOH . E 5 HOH A 105 505 132 HOH HOH . E 5 HOH A 106 506 61 HOH HOH . E 5 HOH A 107 507 106 HOH HOH . E 5 HOH A 108 508 101 HOH HOH . E 5 HOH A 109 509 142 HOH HOH . E 5 HOH A 110 510 118 HOH HOH . E 5 HOH A 111 511 59 HOH HOH . E 5 HOH A 112 512 97 HOH HOH . E 5 HOH A 113 513 96 HOH HOH . E 5 HOH A 114 514 138 HOH HOH . E 5 HOH A 115 515 105 HOH HOH . E 5 HOH A 116 516 81 HOH HOH . E 5 HOH A 117 517 114 HOH HOH . E 5 HOH A 118 518 83 HOH HOH . E 5 HOH A 119 519 122 HOH HOH . E 5 HOH A 120 520 93 HOH HOH . E 5 HOH A 121 521 126 HOH HOH . E 5 HOH A 122 522 112 HOH HOH . E 5 HOH A 123 523 84 HOH HOH . E 5 HOH A 124 524 102 HOH HOH . E 5 HOH A 125 525 38 HOH HOH . E 5 HOH A 126 526 104 HOH HOH . E 5 HOH A 127 527 87 HOH HOH . E 5 HOH A 128 528 103 HOH HOH . E 5 HOH A 129 529 58 HOH HOH . E 5 HOH A 130 530 52 HOH HOH . E 5 HOH A 131 531 69 HOH HOH . E 5 HOH A 132 532 21 HOH HOH . E 5 HOH A 133 533 47 HOH HOH . E 5 HOH A 134 534 134 HOH HOH . E 5 HOH A 135 535 25 HOH HOH . E 5 HOH A 136 536 123 HOH HOH . E 5 HOH A 137 537 133 HOH HOH . E 5 HOH A 138 538 116 HOH HOH . E 5 HOH A 139 539 110 HOH HOH . E 5 HOH A 140 540 115 HOH HOH . E 5 HOH A 141 541 89 HOH HOH . E 5 HOH A 142 542 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 IM2 . . . B 2 -4.472 17.196 -13.517 1 24.14 ? C7 IM2 301 A 1 HETATM 2 C C2 IM2 . . . B 2 -8.201 17.952 -11.112 1 43.89 ? C2 IM2 301 A 1 HETATM 3 C C6 IM2 . . . B 2 -5.287 18.345 -12.966 1 33.61 ? C6 IM2 301 A 1 HETATM 4 C C5 IM2 . . . B 2 -5.821 18.014 -11.556 1 35.84 ? C5 IM2 301 A 1 HETATM 5 C C3 IM2 . . . B 2 -7.736 16.669 -11.319 1 44.31 ? C3 IM2 301 A 1 HETATM 6 O O7 IM2 . . . B 2 -4.831 16.583 -14.468 1 26.36 ? O7 IM2 301 A 1 HETATM 7 C C61 IM2 . . . B 2 -4.647 19.729 -13.112 1 33.55 ? C61 IM2 301 A 1 HETATM 8 O O62 IM2 . . . B 2 -5.506 20.551 -13.903 1 54.09 ? O62 IM2 301 A 1 HETATM 9 C C62 IM2 . . . B 2 -3.27 19.674 -13.735 1 28.94 ? C62 IM2 301 A 1 HETATM 10 N N4 IM2 . . . B 2 -6.388 16.675 -11.566 1 32.13 ? N4 IM2 301 A 1 HETATM 11 C C31 IM2 . . . B 2 -8.488 15.412 -11.366 1 41.65 ? C31 IM2 301 A 1 HETATM 12 O O31 IM2 . . . B 2 -7.845 14.384 -11.85 1 41.66 ? O31 IM2 301 A 1 HETATM 13 O O32 IM2 . . . B 2 -9.641 15.356 -10.966 1 49 ? O32 IM2 301 A 1 HETATM 14 S S21 IM2 . . . B 2 -9.836 18.523 -10.861 1 67.33 ? S21 IM2 301 A 1 HETATM 15 C C22 IM2 . . . B 2 -9.701 19.726 -9.507 1 52.82 ? C22 IM2 301 A 1 HETATM 16 C C23 IM2 . . . B 2 -10.817 19.35 -8.551 1 51.99 ? C23 IM2 301 A 1 HETATM 17 N N24 IM2 . . . B 2 -10.815 17.923 -8.252 1 72 ? N24 IM2 301 A 1 HETATM 18 C C25 IM2 . . . B 2 -11.891 17.13 -8.454 1 72.39 ? C25 IM2 301 A 1 HETATM 19 N N26 IM2 . . . B 2 -11.818 15.861 -8.163 1 65.02 ? N26 IM2 301 A 1 HETATM 20 C C1 IM2 . . . B 2 -7.024 18.881 -11.192 1 36.52 ? C1 IM2 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #