data_7KI8 # _model_server_result.job_id yIj2BAgd2Y_BD-WpWYEecg _model_server_result.datetime_utc '2024-11-22 14:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ki8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7KI8 # _exptl.entry_id 7KI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.501 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-[2-({3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propyl}amino)phenyl]piperidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.41 _cell.angle_gamma 90 _cell.entry_id 7KI8 _cell.length_a 29.46 _cell.length_b 70.86 _cell.length_c 36.16 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N6 O3' _chem_comp.formula_weight 414.501 _chem_comp.id WFA _chem_comp.mon_nstd_flag . _chem_comp.name '1-[2-({3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propyl}amino)phenyl]piperidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N06 C05 WFA sing 456 n n C05 N04 WFA doub 457 n y C05 N07 WFA sing 458 n y N04 C03 WFA sing 459 n y N07 C08 WFA doub 460 n y C03 C02 WFA sing 461 n n C03 C10 WFA doub 462 n y C08 C10 WFA sing 463 n y C08 N09 WFA sing 464 n n C01 C02 WFA sing 465 n n C10 O11 WFA sing 466 n n O11 C12 WFA sing 467 n n C26 C27 WFA sing 468 n n C26 C25 WFA sing 469 n n C12 C13 WFA sing 470 n n O30 C28 WFA doub 471 n n C27 N22 WFA sing 472 n n C25 C28 WFA sing 473 n n C25 C24 WFA sing 474 n n C28 O29 WFA sing 475 n n C13 C14 WFA sing 476 n n N22 C21 WFA sing 477 n n N22 C23 WFA sing 478 n n N15 C14 WFA sing 479 n n N15 C16 WFA sing 480 n n C21 C16 WFA doub 481 n y C21 C20 WFA sing 482 n y C16 C17 WFA sing 483 n y C20 C19 WFA doub 484 n y C17 C18 WFA doub 485 n y C19 C18 WFA sing 486 n y C24 C23 WFA sing 487 n n C17 H1 WFA sing 488 n n C18 H2 WFA sing 489 n n C19 H3 WFA sing 490 n n C20 H4 WFA sing 491 n n C26 H5 WFA sing 492 n n C26 H6 WFA sing 493 n n C27 H7 WFA sing 494 n n C27 H8 WFA sing 495 n n C01 H9 WFA sing 496 n n C01 H10 WFA sing 497 n n C01 H11 WFA sing 498 n n C02 H12 WFA sing 499 n n C02 H13 WFA sing 500 n n C12 H14 WFA sing 501 n n C12 H15 WFA sing 502 n n C13 H16 WFA sing 503 n n C13 H17 WFA sing 504 n n C14 H18 WFA sing 505 n n C14 H19 WFA sing 506 n n C23 H20 WFA sing 507 n n C23 H21 WFA sing 508 n n C24 H22 WFA sing 509 n n C24 H23 WFA sing 510 n n C25 H24 WFA sing 511 n n N06 H25 WFA sing 512 n n N06 H26 WFA sing 513 n n N09 H27 WFA sing 514 n n N09 H28 WFA sing 515 n n N15 H29 WFA sing 516 n n O29 H30 WFA sing 517 n n # _atom_sites.entry_id 7KI8 _atom_sites.fract_transf_matrix[1][1] 0.033944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013311 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 WFA A 1 202 301 WFA 580 . D 4 HOH A 1 301 195 HOH HOH . D 4 HOH A 2 302 262 HOH HOH . D 4 HOH A 3 303 182 HOH HOH . D 4 HOH A 4 304 160 HOH HOH . D 4 HOH A 5 305 164 HOH HOH . D 4 HOH A 6 306 202 HOH HOH . D 4 HOH A 7 307 268 HOH HOH . D 4 HOH A 8 308 234 HOH HOH . D 4 HOH A 9 309 179 HOH HOH . D 4 HOH A 10 310 266 HOH HOH . D 4 HOH A 11 311 83 HOH HOH . D 4 HOH A 12 312 235 HOH HOH . D 4 HOH A 13 313 256 HOH HOH . D 4 HOH A 14 314 32 HOH HOH . D 4 HOH A 15 315 81 HOH HOH . D 4 HOH A 16 316 265 HOH HOH . D 4 HOH A 17 317 133 HOH HOH . D 4 HOH A 18 318 8 HOH HOH . D 4 HOH A 19 319 169 HOH HOH . D 4 HOH A 20 320 100 HOH HOH . D 4 HOH A 21 321 94 HOH HOH . D 4 HOH A 22 322 127 HOH HOH . D 4 HOH A 23 323 91 HOH HOH . D 4 HOH A 24 324 25 HOH HOH . D 4 HOH A 25 325 110 HOH HOH . D 4 HOH A 26 326 115 HOH HOH . D 4 HOH A 27 327 267 HOH HOH . D 4 HOH A 28 328 120 HOH HOH . D 4 HOH A 29 329 82 HOH HOH . D 4 HOH A 30 330 77 HOH HOH . D 4 HOH A 31 331 78 HOH HOH . D 4 HOH A 32 332 50 HOH HOH . D 4 HOH A 33 333 73 HOH HOH . D 4 HOH A 34 334 135 HOH HOH . D 4 HOH A 35 335 26 HOH HOH . D 4 HOH A 36 336 13 HOH HOH . D 4 HOH A 37 337 114 HOH HOH . D 4 HOH A 38 338 29 HOH HOH . D 4 HOH A 39 339 28 HOH HOH . D 4 HOH A 40 340 143 HOH HOH . D 4 HOH A 41 341 55 HOH HOH . D 4 HOH A 42 342 33 HOH HOH . D 4 HOH A 43 343 16 HOH HOH . D 4 HOH A 44 344 155 HOH HOH . D 4 HOH A 45 345 186 HOH HOH . D 4 HOH A 46 346 172 HOH HOH . D 4 HOH A 47 347 31 HOH HOH . D 4 HOH A 48 348 137 HOH HOH . D 4 HOH A 49 349 46 HOH HOH . D 4 HOH A 50 350 58 HOH HOH . D 4 HOH A 51 351 97 HOH HOH . D 4 HOH A 52 352 71 HOH HOH . D 4 HOH A 53 353 264 HOH HOH . D 4 HOH A 54 354 47 HOH HOH . D 4 HOH A 55 355 54 HOH HOH . D 4 HOH A 56 356 19 HOH HOH . D 4 HOH A 57 357 12 HOH HOH . D 4 HOH A 58 358 124 HOH HOH . D 4 HOH A 59 359 89 HOH HOH . D 4 HOH A 60 360 51 HOH HOH . D 4 HOH A 61 361 10 HOH HOH . D 4 HOH A 62 362 141 HOH HOH . D 4 HOH A 63 363 236 HOH HOH . D 4 HOH A 64 364 36 HOH HOH . D 4 HOH A 65 365 9 HOH HOH . D 4 HOH A 66 366 72 HOH HOH . D 4 HOH A 67 367 147 HOH HOH . D 4 HOH A 68 368 145 HOH HOH . D 4 HOH A 69 369 187 HOH HOH . D 4 HOH A 70 370 263 HOH HOH . D 4 HOH A 71 371 38 HOH HOH . D 4 HOH A 72 372 37 HOH HOH . D 4 HOH A 73 373 43 HOH HOH . D 4 HOH A 74 374 49 HOH HOH . D 4 HOH A 75 375 44 HOH HOH . D 4 HOH A 76 376 197 HOH HOH . D 4 HOH A 77 377 90 HOH HOH . D 4 HOH A 78 378 116 HOH HOH . D 4 HOH A 79 379 209 HOH HOH . D 4 HOH A 80 380 98 HOH HOH . D 4 HOH A 81 381 17 HOH HOH . D 4 HOH A 82 382 244 HOH HOH . D 4 HOH A 83 383 253 HOH HOH . D 4 HOH A 84 384 53 HOH HOH . D 4 HOH A 85 385 40 HOH HOH . D 4 HOH A 86 386 61 HOH HOH . D 4 HOH A 87 387 148 HOH HOH . D 4 HOH A 88 388 67 HOH HOH . D 4 HOH A 89 389 74 HOH HOH . D 4 HOH A 90 390 106 HOH HOH . D 4 HOH A 91 391 86 HOH HOH . D 4 HOH A 92 392 2 HOH HOH . D 4 HOH A 93 393 130 HOH HOH . D 4 HOH A 94 394 22 HOH HOH . D 4 HOH A 95 395 128 HOH HOH . D 4 HOH A 96 396 20 HOH HOH . D 4 HOH A 97 397 48 HOH HOH . D 4 HOH A 98 398 190 HOH HOH . D 4 HOH A 99 399 60 HOH HOH . D 4 HOH A 100 400 156 HOH HOH . D 4 HOH A 101 401 11 HOH HOH . D 4 HOH A 102 402 212 HOH HOH . D 4 HOH A 103 403 178 HOH HOH . D 4 HOH A 104 404 18 HOH HOH . D 4 HOH A 105 405 75 HOH HOH . D 4 HOH A 106 406 259 HOH HOH . D 4 HOH A 107 407 63 HOH HOH . D 4 HOH A 108 408 173 HOH HOH . D 4 HOH A 109 409 14 HOH HOH . D 4 HOH A 110 410 30 HOH HOH . D 4 HOH A 111 411 92 HOH HOH . D 4 HOH A 112 412 258 HOH HOH . D 4 HOH A 113 413 52 HOH HOH . D 4 HOH A 114 414 112 HOH HOH . D 4 HOH A 115 415 199 HOH HOH . D 4 HOH A 116 416 139 HOH HOH . D 4 HOH A 117 417 181 HOH HOH . D 4 HOH A 118 418 170 HOH HOH . D 4 HOH A 119 419 247 HOH HOH . D 4 HOH A 120 420 189 HOH HOH . D 4 HOH A 121 421 21 HOH HOH . D 4 HOH A 122 422 157 HOH HOH . D 4 HOH A 123 423 136 HOH HOH . D 4 HOH A 124 424 15 HOH HOH . D 4 HOH A 125 425 142 HOH HOH . D 4 HOH A 126 426 23 HOH HOH . D 4 HOH A 127 427 138 HOH HOH . D 4 HOH A 128 428 108 HOH HOH . D 4 HOH A 129 429 1 HOH HOH . D 4 HOH A 130 430 250 HOH HOH . D 4 HOH A 131 431 39 HOH HOH . D 4 HOH A 132 432 113 HOH HOH . D 4 HOH A 133 433 255 HOH HOH . D 4 HOH A 134 434 150 HOH HOH . D 4 HOH A 135 435 102 HOH HOH . D 4 HOH A 136 436 99 HOH HOH . D 4 HOH A 137 437 88 HOH HOH . D 4 HOH A 138 438 144 HOH HOH . D 4 HOH A 139 439 175 HOH HOH . D 4 HOH A 140 440 129 HOH HOH . D 4 HOH A 141 441 240 HOH HOH . D 4 HOH A 142 442 229 HOH HOH . D 4 HOH A 143 443 65 HOH HOH . D 4 HOH A 144 444 134 HOH HOH . D 4 HOH A 145 445 131 HOH HOH . D 4 HOH A 146 446 35 HOH HOH . D 4 HOH A 147 447 123 HOH HOH . D 4 HOH A 148 448 230 HOH HOH . D 4 HOH A 149 449 56 HOH HOH . D 4 HOH A 150 450 57 HOH HOH . D 4 HOH A 151 451 62 HOH HOH . D 4 HOH A 152 452 243 HOH HOH . D 4 HOH A 153 453 68 HOH HOH . D 4 HOH A 154 454 119 HOH HOH . D 4 HOH A 155 455 241 HOH HOH . D 4 HOH A 156 456 149 HOH HOH . D 4 HOH A 157 457 158 HOH HOH . D 4 HOH A 158 458 66 HOH HOH . D 4 HOH A 159 459 192 HOH HOH . D 4 HOH A 160 460 85 HOH HOH . D 4 HOH A 161 461 185 HOH HOH . D 4 HOH A 162 462 105 HOH HOH . D 4 HOH A 163 463 161 HOH HOH . D 4 HOH A 164 464 95 HOH HOH . D 4 HOH A 165 465 70 HOH HOH . D 4 HOH A 166 466 176 HOH HOH . D 4 HOH A 167 467 146 HOH HOH . D 4 HOH A 168 468 87 HOH HOH . D 4 HOH A 169 469 166 HOH HOH . D 4 HOH A 170 470 132 HOH HOH . D 4 HOH A 171 471 269 HOH HOH . D 4 HOH A 172 472 152 HOH HOH . D 4 HOH A 173 473 64 HOH HOH . D 4 HOH A 174 474 121 HOH HOH . D 4 HOH A 175 475 252 HOH HOH . D 4 HOH A 176 476 217 HOH HOH . D 4 HOH A 177 477 111 HOH HOH . D 4 HOH A 178 478 210 HOH HOH . D 4 HOH A 179 479 109 HOH HOH . D 4 HOH A 180 480 118 HOH HOH . D 4 HOH A 181 481 221 HOH HOH . D 4 HOH A 182 482 239 HOH HOH . D 4 HOH A 183 483 165 HOH HOH . D 4 HOH A 184 484 242 HOH HOH . D 4 HOH A 185 485 257 HOH HOH . D 4 HOH A 186 486 198 HOH HOH . D 4 HOH A 187 487 226 HOH HOH . D 4 HOH A 188 488 171 HOH HOH . D 4 HOH A 189 489 207 HOH HOH . D 4 HOH A 190 490 140 HOH HOH . D 4 HOH A 191 491 126 HOH HOH . D 4 HOH A 192 492 101 HOH HOH . D 4 HOH A 193 493 69 HOH HOH . D 4 HOH A 194 494 249 HOH HOH . D 4 HOH A 195 495 203 HOH HOH . D 4 HOH A 196 496 76 HOH HOH . D 4 HOH A 197 497 194 HOH HOH . D 4 HOH A 198 498 122 HOH HOH . D 4 HOH A 199 499 246 HOH HOH . D 4 HOH A 200 500 177 HOH HOH . D 4 HOH A 201 501 188 HOH HOH . D 4 HOH A 202 502 107 HOH HOH . D 4 HOH A 203 503 248 HOH HOH . D 4 HOH A 204 504 205 HOH HOH . D 4 HOH A 205 505 251 HOH HOH . D 4 HOH A 206 506 79 HOH HOH . D 4 HOH A 207 507 174 HOH HOH . D 4 HOH A 208 508 191 HOH HOH . D 4 HOH A 209 509 184 HOH HOH . D 4 HOH A 210 510 261 HOH HOH . D 4 HOH A 211 511 151 HOH HOH . D 4 HOH A 212 512 117 HOH HOH . D 4 HOH A 213 513 34 HOH HOH . D 4 HOH A 214 514 93 HOH HOH . D 4 HOH A 215 515 206 HOH HOH . D 4 HOH A 216 516 238 HOH HOH . D 4 HOH A 217 517 103 HOH HOH . D 4 HOH A 218 518 180 HOH HOH . D 4 HOH A 219 519 153 HOH HOH . D 4 HOH A 220 520 154 HOH HOH . D 4 HOH A 221 521 45 HOH HOH . D 4 HOH A 222 522 201 HOH HOH . D 4 HOH A 223 523 213 HOH HOH . D 4 HOH A 224 524 80 HOH HOH . D 4 HOH A 225 525 200 HOH HOH . D 4 HOH A 226 526 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 WFA . . . C 3 -7.753 17.094 15.878 1 15.41 ? C16 WFA 202 A 1 HETATM 2 C C17 WFA . . . C 3 -6.637 17.905 16.083 1 17.9 ? C17 WFA 202 A 1 HETATM 3 C C18 WFA . . . C 3 -6.775 19.276 16.231 1 19.11 ? C18 WFA 202 A 1 HETATM 4 C C19 WFA . . . C 3 -8.015 19.868 16.186 1 19.66 ? C19 WFA 202 A 1 HETATM 5 C C20 WFA . . . C 3 -9.14 19.078 15.985 1 18.94 ? C20 WFA 202 A 1 HETATM 6 C C21 WFA . . . C 3 -9.04 17.715 15.833 1 16.4 ? C21 WFA 202 A 1 HETATM 7 C C26 WFA . . . C 3 -11.525 15.447 14.097 1 20.44 ? C26 WFA 202 A 1 HETATM 8 C C27 WFA . . . C 3 -10.479 16.558 14.235 1 20.53 ? C27 WFA 202 A 1 HETATM 9 C C28 WFA . . . C 3 -13.694 14.461 14.943 1 17.56 ? C28 WFA 202 A 1 HETATM 10 C C01 WFA . . . C 3 -8.584 16.226 11.435 1 14.21 ? C01 WFA 202 A 1 HETATM 11 C C02 WFA . . . C 3 -7.098 15.925 11.715 1 9.79 ? C02 WFA 202 A 1 HETATM 12 C C03 WFA . . . C 3 -6.74 14.579 11.144 1 7.78 ? C03 WFA 202 A 1 HETATM 13 C C05 WFA . . . C 3 -6.688 13.232 9.253 1 7.16 ? C05 WFA 202 A 1 HETATM 14 C C08 WFA . . . C 3 -5.954 12.331 11.233 1 7.51 ? C08 WFA 202 A 1 HETATM 15 C C10 WFA . . . C 3 -6.245 13.557 11.89 1 7.6 ? C10 WFA 202 A 1 HETATM 16 C C12 WFA . . . C 3 -7.025 13.228 14.134 1 10.5 ? C12 WFA 202 A 1 HETATM 17 C C13 WFA . . . C 3 -6.529 13.51 15.551 1 12.05 ? C13 WFA 202 A 1 HETATM 18 C C14 WFA . . . C 3 -6.405 15.024 15.846 1 12.5 ? C14 WFA 202 A 1 HETATM 19 C C23 WFA . . . C 3 -11.395 17.299 16.339 1 20.84 ? C23 WFA 202 A 1 HETATM 20 C C24 WFA . . . C 3 -12.538 16.278 16.295 1 20.76 ? C24 WFA 202 A 1 HETATM 21 C C25 WFA . . . C 3 -12.805 15.759 14.88 1 19.82 ? C25 WFA 202 A 1 HETATM 22 N N04 WFA . . . C 3 -6.972 14.403 9.828 1 7.59 ? N04 WFA 202 A 1 HETATM 23 N N06 WFA . . . C 3 -6.964 13.062 7.933 1 7.31 ? N06 WFA 202 A 1 HETATM 24 N N07 WFA . . . C 3 -6.195 12.189 9.922 1 7.5 ? N07 WFA 202 A 1 HETATM 25 N N09 WFA . . . C 3 -5.412 11.284 11.9 1 7.7 ? N09 WFA 202 A 1 HETATM 26 N N15 WFA . . . C 3 -7.664 15.716 15.715 1 13.18 ? N15 WFA 202 A 1 HETATM 27 N N22 WFA . . . C 3 -10.162 16.872 15.624 1 17.35 ? N22 WFA 202 A 1 HETATM 28 O O11 WFA . . . C 3 -5.968 13.664 13.232 1 8.44 ? O11 WFA 202 A 1 HETATM 29 O O29 WFA . . . C 3 -14.702 14.486 15.671 1 16.7 ? O29 WFA 202 A 1 HETATM 30 O O30 WFA . . . C 3 -13.302 13.523 14.233 1 17.4 ? O30 WFA 202 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #