data_7KIJ # _model_server_result.job_id WlGl2OlgLhepKJze4sj2bQ _model_server_result.datetime_utc '2024-11-25 23:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 7KIJ # _exptl.entry_id 7KIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KIJ _cell.length_a 102.986 _cell.length_b 102.986 _cell.length_c 138.294 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,K,L 1 1 C,D,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 D N3 DT 4 B DT 302 1_555 D N1 DA 8 B DA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D O4 DT 4 B DT 302 1_555 D N6 DA 8 B DA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog3 D N3 DA 5 B DA 303 1_555 D N3 DT 7 B DT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DA MISPAIR' hydrog4 D N3 DA 5 B DA 303 1_555 D N6 DA 8 B DA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 DT 4 D DT 302 1_555 B N1 DA 8 D DA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O4 DT 4 D DT 302 1_555 B N6 DA 8 D DA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog7 B N3 DA 5 D DA 303 1_555 B N3 DT 7 D DT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DA MISPAIR' hydrog8 B N3 DA 5 D DA 303 1_555 B N6 DA 8 D DA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KIJ _atom_sites.fract_transf_matrix[1][1] 0.00971 _atom_sites.fract_transf_matrix[1][2] 0.005606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL C 1 201 201 GOL GOL . F 4 SO4 C 1 202 1 SO4 SO4 . G 4 SO4 C 1 203 3 SO4 SO4 . H 4 SO4 C 1 204 4 SO4 SO4 . I 4 SO4 A 1 201 2 SO4 SO4 . J 5 MN B 1 401 1 MN MN . K 6 HOH C 1 301 143 HOH HOH . K 6 HOH C 2 302 166 HOH HOH . K 6 HOH C 3 303 107 HOH HOH . K 6 HOH C 4 304 71 HOH HOH . K 6 HOH C 5 305 218 HOH HOH . K 6 HOH C 6 306 208 HOH HOH . K 6 HOH C 7 307 56 HOH HOH . K 6 HOH C 8 308 229 HOH HOH . K 6 HOH C 9 309 7 HOH HOH . K 6 HOH C 10 310 6 HOH HOH . K 6 HOH C 11 311 40 HOH HOH . K 6 HOH C 12 312 264 HOH HOH . K 6 HOH C 13 313 73 HOH HOH . K 6 HOH C 14 314 38 HOH HOH . K 6 HOH C 15 315 98 HOH HOH . K 6 HOH C 16 316 165 HOH HOH . K 6 HOH C 17 317 151 HOH HOH . K 6 HOH C 18 318 188 HOH HOH . K 6 HOH C 19 319 31 HOH HOH . K 6 HOH C 20 320 123 HOH HOH . K 6 HOH C 21 321 1 HOH HOH . K 6 HOH C 22 322 117 HOH HOH . K 6 HOH C 23 323 15 HOH HOH . K 6 HOH C 24 324 103 HOH HOH . K 6 HOH C 25 325 127 HOH HOH . K 6 HOH C 26 326 140 HOH HOH . K 6 HOH C 27 327 112 HOH HOH . K 6 HOH C 28 328 16 HOH HOH . K 6 HOH C 29 329 25 HOH HOH . K 6 HOH C 30 330 101 HOH HOH . K 6 HOH C 31 331 76 HOH HOH . K 6 HOH C 32 332 91 HOH HOH . K 6 HOH C 33 333 50 HOH HOH . K 6 HOH C 34 334 78 HOH HOH . K 6 HOH C 35 335 182 HOH HOH . K 6 HOH C 36 336 144 HOH HOH . K 6 HOH C 37 337 27 HOH HOH . K 6 HOH C 38 338 13 HOH HOH . K 6 HOH C 39 339 63 HOH HOH . K 6 HOH C 40 340 5 HOH HOH . K 6 HOH C 41 341 72 HOH HOH . K 6 HOH C 42 342 52 HOH HOH . K 6 HOH C 43 343 86 HOH HOH . K 6 HOH C 44 344 24 HOH HOH . K 6 HOH C 45 345 2 HOH HOH . K 6 HOH C 46 346 235 HOH HOH . K 6 HOH C 47 347 45 HOH HOH . K 6 HOH C 48 348 12 HOH HOH . K 6 HOH C 49 349 92 HOH HOH . K 6 HOH C 50 350 47 HOH HOH . K 6 HOH C 51 351 226 HOH HOH . K 6 HOH C 52 352 66 HOH HOH . K 6 HOH C 53 353 269 HOH HOH . K 6 HOH C 54 354 224 HOH HOH . K 6 HOH C 55 355 223 HOH HOH . K 6 HOH C 56 356 121 HOH HOH . K 6 HOH C 57 357 178 HOH HOH . K 6 HOH C 58 358 64 HOH HOH . K 6 HOH C 59 359 104 HOH HOH . K 6 HOH C 60 360 149 HOH HOH . K 6 HOH C 61 361 200 HOH HOH . K 6 HOH C 62 362 110 HOH HOH . K 6 HOH C 63 363 251 HOH HOH . K 6 HOH C 64 364 221 HOH HOH . K 6 HOH C 65 365 36 HOH HOH . K 6 HOH C 66 366 137 HOH HOH . K 6 HOH C 67 367 102 HOH HOH . K 6 HOH C 68 368 204 HOH HOH . K 6 HOH C 69 369 243 HOH HOH . K 6 HOH C 70 370 9 HOH HOH . K 6 HOH C 71 371 262 HOH HOH . K 6 HOH C 72 372 210 HOH HOH . K 6 HOH C 73 373 203 HOH HOH . K 6 HOH C 74 374 215 HOH HOH . K 6 HOH C 75 375 75 HOH HOH . K 6 HOH C 76 376 280 HOH HOH . K 6 HOH C 77 377 227 HOH HOH . K 6 HOH C 78 378 179 HOH HOH . K 6 HOH C 79 379 183 HOH HOH . K 6 HOH C 80 380 155 HOH HOH . K 6 HOH C 81 381 266 HOH HOH . K 6 HOH C 82 382 199 HOH HOH . K 6 HOH C 83 383 190 HOH HOH . K 6 HOH C 84 384 205 HOH HOH . K 6 HOH C 85 385 242 HOH HOH . K 6 HOH C 86 386 252 HOH HOH . K 6 HOH C 87 387 277 HOH HOH . K 6 HOH C 88 388 108 HOH HOH . K 6 HOH C 89 389 206 HOH HOH . K 6 HOH C 90 390 267 HOH HOH . K 6 HOH C 91 391 249 HOH HOH . K 6 HOH C 92 392 118 HOH HOH . K 6 HOH C 93 393 234 HOH HOH . K 6 HOH C 94 394 171 HOH HOH . K 6 HOH C 95 395 282 HOH HOH . K 6 HOH C 96 396 193 HOH HOH . K 6 HOH C 97 397 196 HOH HOH . K 6 HOH C 98 398 278 HOH HOH . K 6 HOH C 99 399 161 HOH HOH . K 6 HOH C 100 400 135 HOH HOH . K 6 HOH C 101 401 177 HOH HOH . K 6 HOH C 102 402 68 HOH HOH . K 6 HOH C 103 403 167 HOH HOH . K 6 HOH C 104 404 254 HOH HOH . K 6 HOH C 105 405 201 HOH HOH . K 6 HOH C 106 406 146 HOH HOH . K 6 HOH C 107 407 250 HOH HOH . K 6 HOH C 108 408 134 HOH HOH . K 6 HOH C 109 409 231 HOH HOH . K 6 HOH C 110 410 212 HOH HOH . K 6 HOH C 111 411 275 HOH HOH . L 6 HOH D 1 401 154 HOH HOH . L 6 HOH D 2 402 88 HOH HOH . L 6 HOH D 3 403 160 HOH HOH . L 6 HOH D 4 404 11 HOH HOH . L 6 HOH D 5 405 44 HOH HOH . L 6 HOH D 6 406 62 HOH HOH . L 6 HOH D 7 407 29 HOH HOH . L 6 HOH D 8 408 37 HOH HOH . L 6 HOH D 9 409 20 HOH HOH . L 6 HOH D 10 410 79 HOH HOH . L 6 HOH D 11 411 41 HOH HOH . L 6 HOH D 12 412 217 HOH HOH . L 6 HOH D 13 413 257 HOH HOH . L 6 HOH D 14 414 35 HOH HOH . L 6 HOH D 15 415 28 HOH HOH . L 6 HOH D 16 416 131 HOH HOH . L 6 HOH D 17 417 202 HOH HOH . L 6 HOH D 18 418 181 HOH HOH . L 6 HOH D 19 419 74 HOH HOH . L 6 HOH D 20 420 96 HOH HOH . L 6 HOH D 21 421 138 HOH HOH . L 6 HOH D 22 422 172 HOH HOH . L 6 HOH D 23 423 67 HOH HOH . L 6 HOH D 24 424 80 HOH HOH . L 6 HOH D 25 425 119 HOH HOH . L 6 HOH D 26 426 54 HOH HOH . L 6 HOH D 27 427 162 HOH HOH . L 6 HOH D 28 428 148 HOH HOH . L 6 HOH D 29 429 122 HOH HOH . L 6 HOH D 30 430 228 HOH HOH . L 6 HOH D 31 431 180 HOH HOH . L 6 HOH D 32 432 244 HOH HOH . L 6 HOH D 33 433 265 HOH HOH . L 6 HOH D 34 434 83 HOH HOH . L 6 HOH D 35 435 239 HOH HOH . L 6 HOH D 36 436 150 HOH HOH . L 6 HOH D 37 437 153 HOH HOH . L 6 HOH D 38 438 158 HOH HOH . L 6 HOH D 39 439 222 HOH HOH . L 6 HOH D 40 440 120 HOH HOH . L 6 HOH D 41 441 156 HOH HOH . L 6 HOH D 42 442 236 HOH HOH . M 6 HOH A 1 301 32 HOH HOH . M 6 HOH A 2 302 82 HOH HOH . M 6 HOH A 3 303 175 HOH HOH . M 6 HOH A 4 304 113 HOH HOH . M 6 HOH A 5 305 185 HOH HOH . M 6 HOH A 6 306 23 HOH HOH . M 6 HOH A 7 307 114 HOH HOH . M 6 HOH A 8 308 246 HOH HOH . M 6 HOH A 9 309 133 HOH HOH . M 6 HOH A 10 310 126 HOH HOH . M 6 HOH A 11 311 184 HOH HOH . M 6 HOH A 12 312 81 HOH HOH . M 6 HOH A 13 313 19 HOH HOH . M 6 HOH A 14 314 51 HOH HOH . M 6 HOH A 15 315 22 HOH HOH . M 6 HOH A 16 316 124 HOH HOH . M 6 HOH A 17 317 87 HOH HOH . M 6 HOH A 18 318 90 HOH HOH . M 6 HOH A 19 319 93 HOH HOH . M 6 HOH A 20 320 33 HOH HOH . M 6 HOH A 21 321 111 HOH HOH . M 6 HOH A 22 322 230 HOH HOH . M 6 HOH A 23 323 17 HOH HOH . M 6 HOH A 24 324 130 HOH HOH . M 6 HOH A 25 325 4 HOH HOH . M 6 HOH A 26 326 94 HOH HOH . M 6 HOH A 27 327 283 HOH HOH . M 6 HOH A 28 328 14 HOH HOH . M 6 HOH A 29 329 10 HOH HOH . M 6 HOH A 30 330 30 HOH HOH . M 6 HOH A 31 331 55 HOH HOH . M 6 HOH A 32 332 163 HOH HOH . M 6 HOH A 33 333 116 HOH HOH . M 6 HOH A 34 334 232 HOH HOH . M 6 HOH A 35 335 26 HOH HOH . M 6 HOH A 36 336 48 HOH HOH . M 6 HOH A 37 337 3 HOH HOH . M 6 HOH A 38 338 39 HOH HOH . M 6 HOH A 39 339 100 HOH HOH . M 6 HOH A 40 340 8 HOH HOH . M 6 HOH A 41 341 21 HOH HOH . M 6 HOH A 42 342 128 HOH HOH . M 6 HOH A 43 343 61 HOH HOH . M 6 HOH A 44 344 69 HOH HOH . M 6 HOH A 45 345 109 HOH HOH . M 6 HOH A 46 346 147 HOH HOH . M 6 HOH A 47 347 187 HOH HOH . M 6 HOH A 48 348 170 HOH HOH . M 6 HOH A 49 349 129 HOH HOH . M 6 HOH A 50 350 253 HOH HOH . M 6 HOH A 51 351 59 HOH HOH . M 6 HOH A 52 352 209 HOH HOH . M 6 HOH A 53 353 194 HOH HOH . M 6 HOH A 54 354 255 HOH HOH . M 6 HOH A 55 355 248 HOH HOH . M 6 HOH A 56 356 84 HOH HOH . M 6 HOH A 57 357 97 HOH HOH . M 6 HOH A 58 358 145 HOH HOH . M 6 HOH A 59 359 85 HOH HOH . M 6 HOH A 60 360 263 HOH HOH . M 6 HOH A 61 361 152 HOH HOH . M 6 HOH A 62 362 106 HOH HOH . M 6 HOH A 63 363 270 HOH HOH . M 6 HOH A 64 364 195 HOH HOH . M 6 HOH A 65 365 132 HOH HOH . M 6 HOH A 66 366 95 HOH HOH . M 6 HOH A 67 367 189 HOH HOH . M 6 HOH A 68 368 259 HOH HOH . M 6 HOH A 69 369 157 HOH HOH . M 6 HOH A 70 370 173 HOH HOH . M 6 HOH A 71 371 142 HOH HOH . M 6 HOH A 72 372 70 HOH HOH . M 6 HOH A 73 373 245 HOH HOH . M 6 HOH A 74 374 256 HOH HOH . M 6 HOH A 75 375 272 HOH HOH . M 6 HOH A 76 376 192 HOH HOH . M 6 HOH A 77 377 207 HOH HOH . M 6 HOH A 78 378 247 HOH HOH . M 6 HOH A 79 379 279 HOH HOH . M 6 HOH A 80 380 271 HOH HOH . M 6 HOH A 81 381 42 HOH HOH . M 6 HOH A 82 382 233 HOH HOH . M 6 HOH A 83 383 261 HOH HOH . M 6 HOH A 84 384 125 HOH HOH . M 6 HOH A 85 385 174 HOH HOH . M 6 HOH A 86 386 274 HOH HOH . M 6 HOH A 87 387 105 HOH HOH . M 6 HOH A 88 388 214 HOH HOH . N 6 HOH B 1 501 176 HOH HOH . N 6 HOH B 2 502 77 HOH HOH . N 6 HOH B 3 503 34 HOH HOH . N 6 HOH B 4 504 115 HOH HOH . N 6 HOH B 5 505 65 HOH HOH . N 6 HOH B 6 506 57 HOH HOH . N 6 HOH B 7 507 159 HOH HOH . N 6 HOH B 8 508 241 HOH HOH . N 6 HOH B 9 509 164 HOH HOH . N 6 HOH B 10 510 99 HOH HOH . N 6 HOH B 11 511 139 HOH HOH . N 6 HOH B 12 512 186 HOH HOH . N 6 HOH B 13 513 238 HOH HOH . N 6 HOH B 14 514 43 HOH HOH . N 6 HOH B 15 515 191 HOH HOH . N 6 HOH B 16 516 46 HOH HOH . N 6 HOH B 17 517 213 HOH HOH . N 6 HOH B 18 518 220 HOH HOH . N 6 HOH B 19 519 225 HOH HOH . N 6 HOH B 20 520 49 HOH HOH . N 6 HOH B 21 521 169 HOH HOH . N 6 HOH B 22 522 18 HOH HOH . N 6 HOH B 23 523 60 HOH HOH . N 6 HOH B 24 524 276 HOH HOH . N 6 HOH B 25 525 53 HOH HOH . N 6 HOH B 26 526 58 HOH HOH . N 6 HOH B 27 527 89 HOH HOH . N 6 HOH B 28 528 216 HOH HOH . N 6 HOH B 29 529 258 HOH HOH . N 6 HOH B 30 530 281 HOH HOH . N 6 HOH B 31 531 197 HOH HOH . N 6 HOH B 32 532 211 HOH HOH . N 6 HOH B 33 533 168 HOH HOH . N 6 HOH B 34 534 260 HOH HOH . N 6 HOH B 35 535 219 HOH HOH . N 6 HOH B 36 536 141 HOH HOH . N 6 HOH B 37 537 273 HOH HOH . N 6 HOH B 38 538 268 HOH HOH . N 6 HOH B 39 539 240 HOH HOH . N 6 HOH B 40 540 237 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x 41.189 _atom_site.Cartn_y 8.176 _atom_site.Cartn_z 10.073 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 80.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 193 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #