data_7KIR # _model_server_result.job_id nYgHEfBmyOrPuWyynrWBcA _model_server_result.datetime_utc '2024-11-17 23:52:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7KIR # _exptl.entry_id 7KIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4-BISPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KIR _cell.length_a 51.437 _cell.length_b 51.437 _cell.length_c 142.938 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall 'P 4w' _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 79 A GLU 79 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A OD2 ASP 153 A ASP 153 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc3 A OD1 ASP 153 A ASP 153 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 A O ILE 155 A ILE 155 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc5 A OD1 ASP 156 A ASP 156 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 A OD1 ASP 317 A ASP 317 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc7 B O1 2IP . A 2IP 501 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc8 B O11 2IP . A 2IP 501 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc9 B O11 2IP . A 2IP 501 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 C CA CA . A CA 502 1_555 E O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc11 D CA CA . A CA 503 1_555 E O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc12 D CA CA . A CA 503 1_555 E O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id 2IP _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4-BISPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2IP sing 1 n n C1 C6 2IP sing 2 n n C1 O1 2IP sing 3 n n C1 H1 2IP sing 4 n n C2 C3 2IP sing 5 n n C2 O2 2IP sing 6 n n C2 H2 2IP sing 7 n n C3 C4 2IP sing 8 n n C3 O3 2IP sing 9 n n C3 H3 2IP sing 10 n n C4 C5 2IP sing 11 n n C4 O4 2IP sing 12 n n C4 H4 2IP sing 13 n n C5 C6 2IP sing 14 n n C5 O5 2IP sing 15 n n C5 H5 2IP sing 16 n n C6 O6 2IP sing 17 n n C6 H6 2IP sing 18 n n O1 P1 2IP sing 19 n n O2 HO2 2IP sing 20 n n O3 HO3 2IP sing 21 n n O4 P4 2IP sing 22 n n O5 HO5 2IP sing 23 n n O6 HO6 2IP sing 24 n n P4 O41 2IP doub 25 n n P4 O42 2IP sing 26 n n P4 O43 2IP sing 27 n n O42 HO42 2IP sing 28 n n O43 HO43 2IP sing 29 n n P1 O11 2IP doub 30 n n P1 O12 2IP sing 31 n n P1 O13 2IP sing 32 n n O12 HO12 2IP sing 33 n n O13 HO13 2IP sing 34 n n # _atom_sites.entry_id 7KIR _atom_sites.fract_transf_matrix[1][1] 0.019441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2IP A 1 501 786 2IP 2IP . C 3 CA A 1 502 501 CA CA . D 3 CA A 1 503 502 CA CA . E 4 HOH A 1 601 23 HOH HOH . E 4 HOH A 2 602 4 HOH HOH . E 4 HOH A 3 603 5 HOH HOH . E 4 HOH A 4 604 14 HOH HOH . E 4 HOH A 5 605 22 HOH HOH . E 4 HOH A 6 606 20 HOH HOH . E 4 HOH A 7 607 12 HOH HOH . E 4 HOH A 8 608 7 HOH HOH . E 4 HOH A 9 609 6 HOH HOH . E 4 HOH A 10 610 8 HOH HOH . E 4 HOH A 11 611 3 HOH HOH . E 4 HOH A 12 612 16 HOH HOH . E 4 HOH A 13 613 10 HOH HOH . E 4 HOH A 14 614 18 HOH HOH . E 4 HOH A 15 615 13 HOH HOH . E 4 HOH A 16 616 1 HOH HOH . E 4 HOH A 17 617 19 HOH HOH . E 4 HOH A 18 618 11 HOH HOH . E 4 HOH A 19 619 9 HOH HOH . E 4 HOH A 20 620 17 HOH HOH . E 4 HOH A 21 621 2 HOH HOH . E 4 HOH A 22 622 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2IP . . . B 2 -8.133 18.03 38.211 1 29.3 ? C1 2IP 501 A 1 HETATM 2 C C2 2IP . . . B 2 -9.326 17.493 38.952 1 30.72 ? C2 2IP 501 A 1 HETATM 3 C C3 2IP . . . B 2 -9.51 18.484 40.017 1 34.51 ? C3 2IP 501 A 1 HETATM 4 C C4 2IP . . . B 2 -9.887 19.864 39.581 1 34.1 ? C4 2IP 501 A 1 HETATM 5 C C5 2IP . . . B 2 -8.772 20.354 38.674 1 41.96 ? C5 2IP 501 A 1 HETATM 6 C C6 2IP . . . B 2 -8.579 19.326 37.588 1 36.87 ? C6 2IP 501 A 1 HETATM 7 O O1 2IP . . . B 2 -7.738 17.042 37.341 1 32.78 ? O1 2IP 501 A 1 HETATM 8 O O2 2IP . . . B 2 -10.491 17.548 38.188 1 29.38 ? O2 2IP 501 A 1 HETATM 9 O O3 2IP . . . B 2 -10.521 17.901 40.766 1 36.83 ? O3 2IP 501 A 1 HETATM 10 O O4 2IP . . . B 2 -9.786 20.684 40.651 1 32.07 ? O4 2IP 501 A 1 HETATM 11 O O5 2IP . . . B 2 -9.129 21.625 38.215 1 36.49 ? O5 2IP 501 A 1 HETATM 12 O O6 2IP . . . B 2 -7.543 19.832 36.809 1 44.18 ? O6 2IP 501 A 1 HETATM 13 P P4 2IP . . . B 2 -10.856 20.62 41.894 1 30.38 ? P4 2IP 501 A 1 HETATM 14 O O41 2IP . . . B 2 -12.271 20.45 41.425 1 26.54 ? O41 2IP 501 A 1 HETATM 15 O O42 2IP . . . B 2 -10.452 21.887 42.776 1 41.25 ? O42 2IP 501 A 1 HETATM 16 O O43 2IP . . . B 2 -10.461 19.363 42.802 1 28.67 ? O43 2IP 501 A 1 HETATM 17 P P1 2IP . . . B 2 -6.808 15.856 37.931 1 32.78 ? P1 2IP 501 A 1 HETATM 18 O O11 2IP . . . B 2 -7.207 14.662 37.049 1 29 ? O11 2IP 501 A 1 HETATM 19 O O12 2IP . . . B 2 -7.185 15.42 39.256 1 26.62 ? O12 2IP 501 A 1 HETATM 20 O O13 2IP . . . B 2 -5.279 16.223 37.787 1 31.25 ? O13 2IP 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #