data_7KIS # _model_server_result.job_id cbjnUeAyuMjr73wgwgH25g _model_server_result.datetime_utc '2024-11-15 13:43:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 7KIS # _exptl.entry_id 7KIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,5R)-1-formyl-N'-[(3R)-pyrrolidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.73 _cell.angle_gamma 90 _cell.entry_id 7KIS _cell.length_a 82.018 _cell.length_b 75.924 _cell.length_c 97.299 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 327 A SER 327 1_555 C CAG C9D . A C9D 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale2 B OG SER 327 B SER 327 1_555 E CAG C9D . B C9D 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C12 H21 N5 O7 S' _chem_comp.formula_weight 379.389 _chem_comp.id C9D _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,5R)-1-formyl-N'-[(3R)-pyrrolidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'open form - WCK 5153' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAE SAY C9D doub 70 n n OAF SAY C9D doub 71 n n SAY OAR C9D sing 72 n n SAY OAD C9D sing 73 n n OAR NAQ C9D sing 74 n n NAQ CAU C9D sing 75 n n CB CAJ C9D sing 76 n n CB CA C9D sing 77 n n CAJ CAU C9D sing 78 n n OAA CAG C9D doub 79 n n CAU CAM C9D sing 80 n n CAG N C9D sing 81 n n CA N C9D sing 82 n n CA C C9D sing 83 n n N CAM C9D sing 84 n n NAP C C9D sing 85 n n NAP NAO C9D sing 86 n n C O C9D doub 87 n n NAO CAS C9D sing 88 n n OAB CAS C9D doub 89 n n CAS CAV C9D sing 90 n n CAH CAI C9D sing 91 n n CAH NAN C9D sing 92 n n CAI CAV C9D sing 93 n n CAV CAL C9D sing 94 n n NAN CAL C9D sing 95 n n NAQ H1 C9D sing 96 n n CAU H2 C9D sing 97 n n CAJ H3 C9D sing 98 n n CAJ H4 C9D sing 99 n n CB H5 C9D sing 100 n n CB H6 C9D sing 101 n n CAM H7 C9D sing 102 n n CAM H8 C9D sing 103 n n CAG H9 C9D sing 104 n n CA H10 C9D sing 105 n n NAP H11 C9D sing 106 n n NAO H12 C9D sing 107 n n CAV H13 C9D sing 108 n n CAI H14 C9D sing 109 n n CAI H15 C9D sing 110 n n CAH H16 C9D sing 111 n n CAH H17 C9D sing 112 n n NAN H18 C9D sing 113 n n CAL H20 C9D sing 114 n n CAL H21 C9D sing 115 n n OAD H22 C9D sing 116 n n # _atom_sites.entry_id 7KIS _atom_sites.fract_transf_matrix[1][1] 0.012192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003665 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C9D A 1 701 1 C9D LIG . D 3 CL A 1 702 1 CL CL . E 2 C9D B 1 701 1 C9D LIG . F 4 HOH A 1 801 13 HOH HOH . F 4 HOH A 2 802 1 HOH HOH . F 4 HOH A 3 803 10 HOH HOH . F 4 HOH A 4 804 16 HOH HOH . F 4 HOH A 5 805 55 HOH HOH . F 4 HOH A 6 806 9 HOH HOH . F 4 HOH A 7 807 17 HOH HOH . F 4 HOH A 8 808 28 HOH HOH . F 4 HOH A 9 809 12 HOH HOH . F 4 HOH A 10 810 5 HOH HOH . F 4 HOH A 11 811 40 HOH HOH . F 4 HOH A 12 812 11 HOH HOH . F 4 HOH A 13 813 21 HOH HOH . G 4 HOH B 1 801 19 HOH HOH . G 4 HOH B 2 802 20 HOH HOH . G 4 HOH B 3 803 62 HOH HOH . G 4 HOH B 4 804 75 HOH HOH . G 4 HOH B 5 805 4 HOH HOH . G 4 HOH B 6 806 31 HOH HOH . G 4 HOH B 7 807 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF C9D . . . E 2 16.639 -57.255 21.587 1 46.42 ? OAF C9D 701 B 1 HETATM 2 S SAY C9D . . . E 2 16.819 -58.664 22.131 1 54.63 ? SAY C9D 701 B 1 HETATM 3 O OAD C9D . . . E 2 15.481 -59.322 22.387 1 53.4 -1 OAD C9D 701 B 1 HETATM 4 O OAE C9D . . . E 2 17.554 -59.336 20.991 1 46.82 ? OAE C9D 701 B 1 HETATM 5 O OAR C9D . . . E 2 17.755 -58.665 23.547 1 49.1 ? OAR C9D 701 B 1 HETATM 6 N NAQ C9D . . . E 2 18.65 -59.788 23.488 1 43.64 ? NAQ C9D 701 B 1 HETATM 7 C CAU C9D . . . E 2 18.301 -60.815 24.553 1 43.9 ? CAU C9D 701 B 1 HETATM 8 C CAJ C9D . . . E 2 16.898 -60.623 24.992 1 35.18 ? CAJ C9D 701 B 1 HETATM 9 C CB C9D . . . E 2 16.569 -61.346 26.238 1 38.49 ? CB C9D 701 B 1 HETATM 10 C CAM C9D . . . E 2 19.323 -60.692 25.683 1 36.9 ? CAM C9D 701 B 1 HETATM 11 N N C9D . . . E 2 18.737 -60.284 27.015 1 39.34 ? N C9D 701 B 1 HETATM 12 C CAG C9D . . . E 2 19.137 -58.997 27.587 1 43.04 ? CAG C9D 701 B 1 HETATM 13 O OAA C9D . . . E 2 18.355 -58.356 28.215 1 47.53 ? OAA C9D 701 B 1 HETATM 14 C CA C9D . . . E 2 17.405 -60.871 27.422 1 44.13 ? CA C9D 701 B 1 HETATM 15 C C C9D . . . E 2 17.684 -62.044 28.344 1 42.86 ? C C9D 701 B 1 HETATM 16 O O C9D . . . E 2 16.92 -62.942 28.42 1 44.59 ? O C9D 701 B 1 HETATM 17 N NAP C9D . . . E 2 18.93 -62.055 29.147 1 42.11 ? NAP C9D 701 B 1 HETATM 18 N NAO C9D . . . E 2 19.193 -63.157 30.004 1 48.99 ? NAO C9D 701 B 1 HETATM 19 C CAS C9D . . . E 2 18.319 -63.459 31.136 1 48.11 ? CAS C9D 701 B 1 HETATM 20 O OAB C9D . . . E 2 17.37 -62.785 31.367 1 55.68 ? OAB C9D 701 B 1 HETATM 21 C CAV C9D . . . E 2 18.665 -64.707 32.041 1 44.29 ? CAV C9D 701 B 1 HETATM 22 C CAI C9D . . . E 2 18.378 -66.014 31.224 1 40.86 ? CAI C9D 701 B 1 HETATM 23 C CAH C9D . . . E 2 17.134 -66.688 31.934 1 39.12 ? CAH C9D 701 B 1 HETATM 24 N NAN C9D . . . E 2 17.185 -66.247 33.206 1 44.07 ? NAN C9D 701 B 1 HETATM 25 C CAL C9D . . . E 2 17.872 -64.755 33.15 1 51.48 ? CAL C9D 701 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #