data_7KIT # _model_server_result.job_id uiRe9v4GfEGPoy38GiizOw _model_server_result.datetime_utc '2024-12-02 19:55:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7KIT # _exptl.entry_id 7KIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 249.244 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KIT _cell.length_a 66.945 _cell.length_b 78.874 _cell.length_c 87.213 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 294 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 294 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAG _struct_conn.ptnr2_label_comp_id C8Y _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id C8Y _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.371 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H11 N3 O5 S' _chem_comp.formula_weight 249.244 _chem_comp.id C8Y _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'open form - WCK 4234' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAF C8Y trip 70 n n CAF CAM C8Y sing 71 n n CAJ NAO C8Y sing 72 n n CAJ CAN C8Y sing 73 n n NAO CAM C8Y sing 74 n n NAO CAG C8Y sing 75 n n CAM CAH C8Y sing 76 n n CAG OAB C8Y doub 77 n n CAN CAI C8Y sing 78 n n CAN NAK C8Y sing 79 n n CAI CAH C8Y sing 80 n n NAK OAL C8Y sing 81 n n OAC SAP C8Y doub 82 n n OAL SAP C8Y sing 83 n n SAP OAE C8Y doub 84 n n SAP OAD C8Y sing 85 n n NAK H1 C8Y sing 86 n n CAN H2 C8Y sing 87 n n CAI H3 C8Y sing 88 n n CAI H4 C8Y sing 89 n n CAH H5 C8Y sing 90 n n CAH H6 C8Y sing 91 n n CAM H7 C8Y sing 92 n n CAG H8 C8Y sing 93 n n CAJ H9 C8Y sing 94 n n CAJ H10 C8Y sing 95 n n OAD H11 C8Y sing 96 n n # _atom_sites.entry_id 7KIT _atom_sites.fract_transf_matrix[1][1] 0.014938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C8Y A 1 601 1 C8Y LIG . C 3 HOH A 1 701 106 HOH HOH . C 3 HOH A 2 702 73 HOH HOH . C 3 HOH A 3 703 6 HOH HOH . C 3 HOH A 4 704 30 HOH HOH . C 3 HOH A 5 705 79 HOH HOH . C 3 HOH A 6 706 126 HOH HOH . C 3 HOH A 7 707 4 HOH HOH . C 3 HOH A 8 708 50 HOH HOH . C 3 HOH A 9 709 23 HOH HOH . C 3 HOH A 10 710 110 HOH HOH . C 3 HOH A 11 711 101 HOH HOH . C 3 HOH A 12 712 109 HOH HOH . C 3 HOH A 13 713 41 HOH HOH . C 3 HOH A 14 714 7 HOH HOH . C 3 HOH A 15 715 16 HOH HOH . C 3 HOH A 16 716 57 HOH HOH . C 3 HOH A 17 717 102 HOH HOH . C 3 HOH A 18 718 104 HOH HOH . C 3 HOH A 19 719 14 HOH HOH . C 3 HOH A 20 720 123 HOH HOH . C 3 HOH A 21 721 36 HOH HOH . C 3 HOH A 22 722 10 HOH HOH . C 3 HOH A 23 723 24 HOH HOH . C 3 HOH A 24 724 5 HOH HOH . C 3 HOH A 25 725 21 HOH HOH . C 3 HOH A 26 726 83 HOH HOH . C 3 HOH A 27 727 42 HOH HOH . C 3 HOH A 28 728 46 HOH HOH . C 3 HOH A 29 729 17 HOH HOH . C 3 HOH A 30 730 2 HOH HOH . C 3 HOH A 31 731 28 HOH HOH . C 3 HOH A 32 732 108 HOH HOH . C 3 HOH A 33 733 103 HOH HOH . C 3 HOH A 34 734 117 HOH HOH . C 3 HOH A 35 735 65 HOH HOH . C 3 HOH A 36 736 40 HOH HOH . C 3 HOH A 37 737 19 HOH HOH . C 3 HOH A 38 738 15 HOH HOH . C 3 HOH A 39 739 128 HOH HOH . C 3 HOH A 40 740 107 HOH HOH . C 3 HOH A 41 741 121 HOH HOH . C 3 HOH A 42 742 64 HOH HOH . C 3 HOH A 43 743 125 HOH HOH . C 3 HOH A 44 744 61 HOH HOH . C 3 HOH A 45 745 74 HOH HOH . C 3 HOH A 46 746 111 HOH HOH . C 3 HOH A 47 747 54 HOH HOH . C 3 HOH A 48 748 69 HOH HOH . C 3 HOH A 49 749 122 HOH HOH . C 3 HOH A 50 750 34 HOH HOH . C 3 HOH A 51 751 8 HOH HOH . C 3 HOH A 52 752 105 HOH HOH . C 3 HOH A 53 753 39 HOH HOH . C 3 HOH A 54 754 33 HOH HOH . C 3 HOH A 55 755 43 HOH HOH . C 3 HOH A 56 756 37 HOH HOH . C 3 HOH A 57 757 27 HOH HOH . C 3 HOH A 58 758 22 HOH HOH . C 3 HOH A 59 759 45 HOH HOH . C 3 HOH A 60 760 47 HOH HOH . C 3 HOH A 61 761 31 HOH HOH . C 3 HOH A 62 762 3 HOH HOH . C 3 HOH A 63 763 60 HOH HOH . C 3 HOH A 64 764 114 HOH HOH . C 3 HOH A 65 765 55 HOH HOH . C 3 HOH A 66 766 62 HOH HOH . C 3 HOH A 67 767 81 HOH HOH . C 3 HOH A 68 768 44 HOH HOH . C 3 HOH A 69 769 127 HOH HOH . C 3 HOH A 70 770 35 HOH HOH . C 3 HOH A 71 771 13 HOH HOH . C 3 HOH A 72 772 115 HOH HOH . C 3 HOH A 73 773 112 HOH HOH . C 3 HOH A 74 774 56 HOH HOH . C 3 HOH A 75 775 32 HOH HOH . C 3 HOH A 76 776 1 HOH HOH . C 3 HOH A 77 777 18 HOH HOH . C 3 HOH A 78 778 68 HOH HOH . C 3 HOH A 79 779 116 HOH HOH . C 3 HOH A 80 780 124 HOH HOH . C 3 HOH A 81 781 29 HOH HOH . C 3 HOH A 82 782 48 HOH HOH . C 3 HOH A 83 783 77 HOH HOH . C 3 HOH A 84 784 120 HOH HOH . C 3 HOH A 85 785 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE C8Y . . . B 2 2.149 35.047 16.776 1 47.37 ? OAE C8Y 601 A 1 HETATM 2 S SAP C8Y . . . B 2 2.876 36.314 16.409 1 51.02 ? SAP C8Y 601 A 1 HETATM 3 O OAC C8Y . . . B 2 3.06 36.481 14.912 1 42.26 -1 OAC C8Y 601 A 1 HETATM 4 O OAD C8Y . . . B 2 1.959 37.365 16.972 1 58.37 ? OAD C8Y 601 A 1 HETATM 5 O OAL C8Y . . . B 2 4.355 36.255 17.17 1 44.6 ? OAL C8Y 601 A 1 HETATM 6 N NAK C8Y . . . B 2 4.428 37.08 18.297 1 41.36 ? NAK C8Y 601 A 1 HETATM 7 C CAN C8Y . . . B 2 5.774 37.625 18.43 1 37.02 ? CAN C8Y 601 A 1 HETATM 8 C CAI C8Y . . . B 2 6.019 38.637 17.29 1 34.39 ? CAI C8Y 601 A 1 HETATM 9 C CAH C8Y . . . B 2 6.538 38.037 15.981 1 33.8 ? CAH C8Y 601 A 1 HETATM 10 C CAM C8Y . . . B 2 7.695 37.092 16.23 1 35.41 ? CAM C8Y 601 A 1 HETATM 11 C CAF C8Y . . . B 2 8.893 37.837 16.842 1 35.89 ? CAF C8Y 601 A 1 HETATM 12 N NAA C8Y . . . B 2 9.776 38.371 17.313 1 34.14 ? NAA C8Y 601 A 1 HETATM 13 N NAO C8Y . . . B 2 7.211 36.109 17.166 1 35.51 ? NAO C8Y 601 A 1 HETATM 14 C CAG C8Y . . . B 2 7.003 34.745 16.72 1 31.47 ? CAG C8Y 601 A 1 HETATM 15 O OAB C8Y . . . B 2 7.258 34.407 15.611 1 30.64 ? OAB C8Y 601 A 1 HETATM 16 C CAJ C8Y . . . B 2 6.866 36.529 18.515 1 32.7 ? CAJ C8Y 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #