data_7KIW # _model_server_result.job_id YvD8BJYWCPmHItINDHdQZQ _model_server_result.datetime_utc '2024-11-15 13:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7KIW # _exptl.entry_id 7KIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KIW _cell.length_a 68.372 _cell.length_b 80.025 _cell.length_c 88.115 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 294 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 294 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAG _struct_conn.ptnr2_label_comp_id C8V _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id C8V _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.324 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H23 N5 O7 S' _chem_comp.formula_weight 393.416 _chem_comp.id C8V _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'OPEN FORM - Zidebactam' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAF SAZ C8V doub 70 n n OAE SAZ C8V doub 71 n n SAZ OAS C8V sing 72 n n SAZ OAD C8V sing 73 n n OAS NAR C8V sing 74 n n NAR CAV C8V sing 75 n n CB CAK C8V sing 76 n n CB CA C8V sing 77 n n CAK CAV C8V sing 78 n n OAA CAG C8V doub 79 n n CAV CAN C8V sing 80 n n CAG N C8V sing 81 n n CA N C8V sing 82 n n CA C C8V sing 83 n n N CAN C8V sing 84 n n NAQ C C8V sing 85 n n NAQ NAP C8V sing 86 n n C O C8V doub 87 n n CAH CAI C8V sing 88 n n CAH CAJ C8V sing 89 n n CAI NAO C8V sing 90 n n OAB CAT C8V doub 91 n n NAP CAT C8V sing 92 n n CAT CAW C8V sing 93 n n NAO CAM C8V sing 94 n n CAJ CAW C8V sing 95 n n CAW CAM C8V sing 96 n n NAR H1 C8V sing 97 n n CAV H2 C8V sing 98 n n CAK H3 C8V sing 99 n n CAK H4 C8V sing 100 n n CB H5 C8V sing 101 n n CB H6 C8V sing 102 n n CAN H7 C8V sing 103 n n CAN H8 C8V sing 104 n n CAG H9 C8V sing 105 n n CA H10 C8V sing 106 n n NAQ H11 C8V sing 107 n n NAP H12 C8V sing 108 n n CAW H13 C8V sing 109 n n CAJ H14 C8V sing 110 n n CAJ H15 C8V sing 111 n n CAH H16 C8V sing 112 n n CAH H17 C8V sing 113 n n CAI H18 C8V sing 114 n n CAI H19 C8V sing 115 n n NAO H20 C8V sing 116 n n CAM H22 C8V sing 117 n n CAM H23 C8V sing 118 n n OAD H24 C8V sing 119 n n # _atom_sites.entry_id 7KIW _atom_sites.fract_transf_matrix[1][1] 0.014626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C8V A 1 601 1 C8V DRG . C 3 HOH A 1 701 46 HOH HOH . C 3 HOH A 2 702 43 HOH HOH . C 3 HOH A 3 703 80 HOH HOH . C 3 HOH A 4 704 91 HOH HOH . C 3 HOH A 5 705 8 HOH HOH . C 3 HOH A 6 706 85 HOH HOH . C 3 HOH A 7 707 47 HOH HOH . C 3 HOH A 8 708 44 HOH HOH . C 3 HOH A 9 709 65 HOH HOH . C 3 HOH A 10 710 82 HOH HOH . C 3 HOH A 11 711 13 HOH HOH . C 3 HOH A 12 712 33 HOH HOH . C 3 HOH A 13 713 48 HOH HOH . C 3 HOH A 14 714 12 HOH HOH . C 3 HOH A 15 715 27 HOH HOH . C 3 HOH A 16 716 3 HOH HOH . C 3 HOH A 17 717 36 HOH HOH . C 3 HOH A 18 718 57 HOH HOH . C 3 HOH A 19 719 97 HOH HOH . C 3 HOH A 20 720 20 HOH HOH . C 3 HOH A 21 721 62 HOH HOH . C 3 HOH A 22 722 96 HOH HOH . C 3 HOH A 23 723 41 HOH HOH . C 3 HOH A 24 724 69 HOH HOH . C 3 HOH A 25 725 21 HOH HOH . C 3 HOH A 26 726 53 HOH HOH . C 3 HOH A 27 727 15 HOH HOH . C 3 HOH A 28 728 31 HOH HOH . C 3 HOH A 29 729 29 HOH HOH . C 3 HOH A 30 730 28 HOH HOH . C 3 HOH A 31 731 39 HOH HOH . C 3 HOH A 32 732 86 HOH HOH . C 3 HOH A 33 733 95 HOH HOH . C 3 HOH A 34 734 34 HOH HOH . C 3 HOH A 35 735 32 HOH HOH . C 3 HOH A 36 736 16 HOH HOH . C 3 HOH A 37 737 14 HOH HOH . C 3 HOH A 38 738 81 HOH HOH . C 3 HOH A 39 739 63 HOH HOH . C 3 HOH A 40 740 88 HOH HOH . C 3 HOH A 41 741 87 HOH HOH . C 3 HOH A 42 742 42 HOH HOH . C 3 HOH A 43 743 18 HOH HOH . C 3 HOH A 44 744 19 HOH HOH . C 3 HOH A 45 745 26 HOH HOH . C 3 HOH A 46 746 59 HOH HOH . C 3 HOH A 47 747 9 HOH HOH . C 3 HOH A 48 748 50 HOH HOH . C 3 HOH A 49 749 98 HOH HOH . C 3 HOH A 50 750 24 HOH HOH . C 3 HOH A 51 751 40 HOH HOH . C 3 HOH A 52 752 49 HOH HOH . C 3 HOH A 53 753 11 HOH HOH . C 3 HOH A 54 754 52 HOH HOH . C 3 HOH A 55 755 58 HOH HOH . C 3 HOH A 56 756 1 HOH HOH . C 3 HOH A 57 757 72 HOH HOH . C 3 HOH A 58 758 55 HOH HOH . C 3 HOH A 59 759 70 HOH HOH . C 3 HOH A 60 760 64 HOH HOH . C 3 HOH A 61 761 61 HOH HOH . C 3 HOH A 62 762 99 HOH HOH . C 3 HOH A 63 763 51 HOH HOH . C 3 HOH A 64 764 23 HOH HOH . C 3 HOH A 65 765 25 HOH HOH . C 3 HOH A 66 766 37 HOH HOH . C 3 HOH A 67 767 35 HOH HOH . C 3 HOH A 68 768 67 HOH HOH . C 3 HOH A 69 769 66 HOH HOH . C 3 HOH A 70 770 71 HOH HOH . C 3 HOH A 71 771 38 HOH HOH . C 3 HOH A 72 772 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF C8V . . . B 2 -2.382 -1.942 -15.86 1 76.95 ? OAF C8V 601 A 1 HETATM 2 S SAZ C8V . . . B 2 -2.515 -3.095 -16.863 1 75.31 ? SAZ C8V 601 A 1 HETATM 3 O OAD C8V . . . B 2 -2.458 -4.397 -16.074 1 84.56 ? OAD C8V 601 A 1 HETATM 4 O OAE C8V . . . B 2 -1.388 -3.033 -17.902 1 68.77 ? OAE C8V 601 A 1 HETATM 5 O OAS C8V . . . B 2 -3.873 -3.044 -17.566 1 68.72 ? OAS C8V 601 A 1 HETATM 6 N NAR C8V . . . B 2 -4.143 -1.938 -18.315 1 61.26 ? NAR C8V 601 A 1 HETATM 7 C CAV C8V . . . B 2 -5.566 -1.572 -18.436 1 54.96 ? CAV C8V 601 A 1 HETATM 8 C CAK C8V . . . B 2 -5.903 -0.465 -17.441 1 53.55 ? CAK C8V 601 A 1 HETATM 9 C CB C8V . . . B 2 -6.171 -0.879 -16.052 1 53.69 ? CB C8V 601 A 1 HETATM 10 C CAN C8V . . . B 2 -6.544 -2.729 -18.361 1 52.18 ? CAN C8V 601 A 1 HETATM 11 N N C8V . . . B 2 -6.959 -2.991 -16.955 1 51.89 ? N C8V 601 A 1 HETATM 12 C CAG C8V . . . B 2 -6.818 -4.236 -16.491 1 43.78 ? CAG C8V 601 A 1 HETATM 13 O OAA C8V . . . B 2 -7.085 -4.631 -15.363 1 40.39 ? OAA C8V 601 A 1 HETATM 14 C CA C8V . . . B 2 -7.363 -1.858 -16.057 1 55.26 ? CA C8V 601 A 1 HETATM 15 C C C8V . . . B 2 -8.616 -1.261 -16.388 1 60.2 ? C C8V 601 A 1 HETATM 16 O O C8V . . . B 2 -9.264 -1.656 -17.359 1 59.56 ? O C8V 601 A 1 HETATM 17 N NAQ C8V . . . B 2 -9.038 -0.317 -15.5 1 70.13 ? NAQ C8V 601 A 1 HETATM 18 N NAP C8V . . . B 2 -10.231 0.359 -15.593 1 80.92 ? NAP C8V 601 A 1 HETATM 19 C CAT C8V . . . B 2 -11.026 0.284 -16.68 1 91.92 ? CAT C8V 601 A 1 HETATM 20 O OAB C8V . . . B 2 -10.765 0.891 -17.717 1 88.47 ? OAB C8V 601 A 1 HETATM 21 C CAW C8V . . . B 2 -12.507 -0.027 -16.381 1 102.58 ? CAW C8V 601 A 1 HETATM 22 C CAJ C8V . . . B 2 -13.334 1.249 -16.591 1 105.44 ? CAJ C8V 601 A 1 HETATM 23 C CAH C8V . . . B 2 -14.689 1.044 -16.008 1 110.63 ? CAH C8V 601 A 1 HETATM 24 C CAI C8V . . . B 2 -14.459 1.138 -14.485 1 114.03 ? CAI C8V 601 A 1 HETATM 25 N NAO C8V . . . B 2 -13.222 0.466 -14.018 1 112.66 ? NAO C8V 601 A 1 HETATM 26 C CAM C8V . . . B 2 -12.741 -0.576 -14.95 1 107.56 ? CAM C8V 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #