data_7KJD # _model_server_result.job_id HVfXDw0jPmfQEksILH3kMg _model_server_result.datetime_utc '2024-11-25 07:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7KJD # _exptl.entry_id 7KJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.31 _cell.angle_gamma 90 _cell.entry_id 7KJD _cell.length_a 52.82 _cell.length_b 47.08 _cell.length_c 75.41 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 120 A ASP 99 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OD2 ASP 120 A ASP 99 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc3 A OD1 ASN 261 A ASN 240 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 A OG SER 265 A SER 244 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 A OE2 GLU 269 A GLU 248 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc6 B MG MG . A MG 401 1_555 F O11 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc7 B MG MG . A MG 401 1_555 F O17 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 B MG MG . A MG 401 1_555 G O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc9 C MG MG . A MG 402 1_555 F O12 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc10 C MG MG . A MG 402 1_555 G O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc11 C MG MG . A MG 402 1_555 G O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc12 C MG MG . A MG 402 1_555 G O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc13 C MG MG . A MG 402 1_555 G O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc14 D MG MG . A MG 403 1_555 F O12 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc15 D MG MG . A MG 403 1_555 F O15 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc16 D MG MG . A MG 403 1_555 G O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc17 D MG MG . A MG 403 1_555 G O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc18 D MG MG . A MG 403 1_555 G O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KJD _atom_sites.fract_transf_matrix[1][1] 0.018932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002093 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 2 MG A 1 402 2 MG MG . D 2 MG A 1 403 3 MG MG . E 3 SO4 A 1 404 1 SO4 SO4 . F 4 RIS A 1 405 1 RIS RIS . G 5 HOH A 1 501 200 HOH HOH . G 5 HOH A 2 502 124 HOH HOH . G 5 HOH A 3 503 106 HOH HOH . G 5 HOH A 4 504 217 HOH HOH . G 5 HOH A 5 505 2 HOH HOH . G 5 HOH A 6 506 157 HOH HOH . G 5 HOH A 7 507 152 HOH HOH . G 5 HOH A 8 508 51 HOH HOH . G 5 HOH A 9 509 132 HOH HOH . G 5 HOH A 10 510 33 HOH HOH . G 5 HOH A 11 511 52 HOH HOH . G 5 HOH A 12 512 239 HOH HOH . G 5 HOH A 13 513 223 HOH HOH . G 5 HOH A 14 514 243 HOH HOH . G 5 HOH A 15 515 118 HOH HOH . G 5 HOH A 16 516 82 HOH HOH . G 5 HOH A 17 517 63 HOH HOH . G 5 HOH A 18 518 30 HOH HOH . G 5 HOH A 19 519 14 HOH HOH . G 5 HOH A 20 520 162 HOH HOH . G 5 HOH A 21 521 172 HOH HOH . G 5 HOH A 22 522 78 HOH HOH . G 5 HOH A 23 523 62 HOH HOH . G 5 HOH A 24 524 56 HOH HOH . G 5 HOH A 25 525 100 HOH HOH . G 5 HOH A 26 526 13 HOH HOH . G 5 HOH A 27 527 120 HOH HOH . G 5 HOH A 28 528 97 HOH HOH . G 5 HOH A 29 529 232 HOH HOH . G 5 HOH A 30 530 235 HOH HOH . G 5 HOH A 31 531 180 HOH HOH . G 5 HOH A 32 532 10 HOH HOH . G 5 HOH A 33 533 28 HOH HOH . G 5 HOH A 34 534 17 HOH HOH . G 5 HOH A 35 535 23 HOH HOH . G 5 HOH A 36 536 15 HOH HOH . G 5 HOH A 37 537 216 HOH HOH . G 5 HOH A 38 538 22 HOH HOH . G 5 HOH A 39 539 49 HOH HOH . G 5 HOH A 40 540 94 HOH HOH . G 5 HOH A 41 541 246 HOH HOH . G 5 HOH A 42 542 70 HOH HOH . G 5 HOH A 43 543 29 HOH HOH . G 5 HOH A 44 544 84 HOH HOH . G 5 HOH A 45 545 6 HOH HOH . G 5 HOH A 46 546 7 HOH HOH . G 5 HOH A 47 547 91 HOH HOH . G 5 HOH A 48 548 237 HOH HOH . G 5 HOH A 49 549 9 HOH HOH . G 5 HOH A 50 550 80 HOH HOH . G 5 HOH A 51 551 89 HOH HOH . G 5 HOH A 52 552 55 HOH HOH . G 5 HOH A 53 553 214 HOH HOH . G 5 HOH A 54 554 34 HOH HOH . G 5 HOH A 55 555 158 HOH HOH . G 5 HOH A 56 556 61 HOH HOH . G 5 HOH A 57 557 65 HOH HOH . G 5 HOH A 58 558 41 HOH HOH . G 5 HOH A 59 559 88 HOH HOH . G 5 HOH A 60 560 35 HOH HOH . G 5 HOH A 61 561 21 HOH HOH . G 5 HOH A 62 562 83 HOH HOH . G 5 HOH A 63 563 50 HOH HOH . G 5 HOH A 64 564 161 HOH HOH . G 5 HOH A 65 565 220 HOH HOH . G 5 HOH A 66 566 60 HOH HOH . G 5 HOH A 67 567 183 HOH HOH . G 5 HOH A 68 568 167 HOH HOH . G 5 HOH A 69 569 270 HOH HOH . G 5 HOH A 70 570 44 HOH HOH . G 5 HOH A 71 571 257 HOH HOH . G 5 HOH A 72 572 76 HOH HOH . G 5 HOH A 73 573 25 HOH HOH . G 5 HOH A 74 574 153 HOH HOH . G 5 HOH A 75 575 147 HOH HOH . G 5 HOH A 76 576 213 HOH HOH . G 5 HOH A 77 577 46 HOH HOH . G 5 HOH A 78 578 125 HOH HOH . G 5 HOH A 79 579 112 HOH HOH . G 5 HOH A 80 580 108 HOH HOH . G 5 HOH A 81 581 184 HOH HOH . G 5 HOH A 82 582 40 HOH HOH . G 5 HOH A 83 583 11 HOH HOH . G 5 HOH A 84 584 222 HOH HOH . G 5 HOH A 85 585 32 HOH HOH . G 5 HOH A 86 586 117 HOH HOH . G 5 HOH A 87 587 19 HOH HOH . G 5 HOH A 88 588 202 HOH HOH . G 5 HOH A 89 589 8 HOH HOH . G 5 HOH A 90 590 38 HOH HOH . G 5 HOH A 91 591 230 HOH HOH . G 5 HOH A 92 592 247 HOH HOH . G 5 HOH A 93 593 81 HOH HOH . G 5 HOH A 94 594 26 HOH HOH . G 5 HOH A 95 595 144 HOH HOH . G 5 HOH A 96 596 146 HOH HOH . G 5 HOH A 97 597 59 HOH HOH . G 5 HOH A 98 598 24 HOH HOH . G 5 HOH A 99 599 57 HOH HOH . G 5 HOH A 100 600 139 HOH HOH . G 5 HOH A 101 601 127 HOH HOH . G 5 HOH A 102 602 145 HOH HOH . G 5 HOH A 103 603 5 HOH HOH . G 5 HOH A 104 604 4 HOH HOH . G 5 HOH A 105 605 135 HOH HOH . G 5 HOH A 106 606 66 HOH HOH . G 5 HOH A 107 607 86 HOH HOH . G 5 HOH A 108 608 1 HOH HOH . G 5 HOH A 109 609 79 HOH HOH . G 5 HOH A 110 610 104 HOH HOH . G 5 HOH A 111 611 48 HOH HOH . G 5 HOH A 112 612 3 HOH HOH . G 5 HOH A 113 613 103 HOH HOH . G 5 HOH A 114 614 113 HOH HOH . G 5 HOH A 115 615 150 HOH HOH . G 5 HOH A 116 616 166 HOH HOH . G 5 HOH A 117 617 98 HOH HOH . G 5 HOH A 118 618 116 HOH HOH . G 5 HOH A 119 619 111 HOH HOH . G 5 HOH A 120 620 75 HOH HOH . G 5 HOH A 121 621 47 HOH HOH . G 5 HOH A 122 622 16 HOH HOH . G 5 HOH A 123 623 36 HOH HOH . G 5 HOH A 124 624 186 HOH HOH . G 5 HOH A 125 625 168 HOH HOH . G 5 HOH A 126 626 64 HOH HOH . G 5 HOH A 127 627 20 HOH HOH . G 5 HOH A 128 628 173 HOH HOH . G 5 HOH A 129 629 67 HOH HOH . G 5 HOH A 130 630 18 HOH HOH . G 5 HOH A 131 631 53 HOH HOH . G 5 HOH A 132 632 12 HOH HOH . G 5 HOH A 133 633 69 HOH HOH . G 5 HOH A 134 634 54 HOH HOH . G 5 HOH A 135 635 45 HOH HOH . G 5 HOH A 136 636 225 HOH HOH . G 5 HOH A 137 637 96 HOH HOH . G 5 HOH A 138 638 102 HOH HOH . G 5 HOH A 139 639 68 HOH HOH . G 5 HOH A 140 640 201 HOH HOH . G 5 HOH A 141 641 101 HOH HOH . G 5 HOH A 142 642 37 HOH HOH . G 5 HOH A 143 643 105 HOH HOH . G 5 HOH A 144 644 130 HOH HOH . G 5 HOH A 145 645 192 HOH HOH . G 5 HOH A 146 646 244 HOH HOH . G 5 HOH A 147 647 31 HOH HOH . G 5 HOH A 148 648 39 HOH HOH . G 5 HOH A 149 649 141 HOH HOH . G 5 HOH A 150 650 72 HOH HOH . G 5 HOH A 151 651 43 HOH HOH . G 5 HOH A 152 652 269 HOH HOH . G 5 HOH A 153 653 193 HOH HOH . G 5 HOH A 154 654 203 HOH HOH . G 5 HOH A 155 655 121 HOH HOH . G 5 HOH A 156 656 198 HOH HOH . G 5 HOH A 157 657 136 HOH HOH . G 5 HOH A 158 658 179 HOH HOH . G 5 HOH A 159 659 155 HOH HOH . G 5 HOH A 160 660 77 HOH HOH . G 5 HOH A 161 661 252 HOH HOH . G 5 HOH A 162 662 74 HOH HOH . G 5 HOH A 163 663 231 HOH HOH . G 5 HOH A 164 664 154 HOH HOH . G 5 HOH A 165 665 27 HOH HOH . G 5 HOH A 166 666 197 HOH HOH . G 5 HOH A 167 667 175 HOH HOH . G 5 HOH A 168 668 234 HOH HOH . G 5 HOH A 169 669 73 HOH HOH . G 5 HOH A 170 670 115 HOH HOH . G 5 HOH A 171 671 123 HOH HOH . G 5 HOH A 172 672 114 HOH HOH . G 5 HOH A 173 673 85 HOH HOH . G 5 HOH A 174 674 190 HOH HOH . G 5 HOH A 175 675 92 HOH HOH . G 5 HOH A 176 676 271 HOH HOH . G 5 HOH A 177 677 87 HOH HOH . G 5 HOH A 178 678 93 HOH HOH . G 5 HOH A 179 679 212 HOH HOH . G 5 HOH A 180 680 249 HOH HOH . G 5 HOH A 181 681 160 HOH HOH . G 5 HOH A 182 682 182 HOH HOH . G 5 HOH A 183 683 227 HOH HOH . G 5 HOH A 184 684 218 HOH HOH . G 5 HOH A 185 685 236 HOH HOH . G 5 HOH A 186 686 42 HOH HOH . G 5 HOH A 187 687 71 HOH HOH . G 5 HOH A 188 688 137 HOH HOH . G 5 HOH A 189 689 164 HOH HOH . G 5 HOH A 190 690 185 HOH HOH . G 5 HOH A 191 691 196 HOH HOH . G 5 HOH A 192 692 149 HOH HOH . G 5 HOH A 193 693 224 HOH HOH . G 5 HOH A 194 694 195 HOH HOH . G 5 HOH A 195 695 99 HOH HOH . G 5 HOH A 196 696 107 HOH HOH . G 5 HOH A 197 697 129 HOH HOH . G 5 HOH A 198 698 110 HOH HOH . G 5 HOH A 199 699 226 HOH HOH . G 5 HOH A 200 700 159 HOH HOH . G 5 HOH A 201 701 194 HOH HOH . G 5 HOH A 202 702 205 HOH HOH . G 5 HOH A 203 703 206 HOH HOH . G 5 HOH A 204 704 128 HOH HOH . G 5 HOH A 205 705 90 HOH HOH . G 5 HOH A 206 706 163 HOH HOH . G 5 HOH A 207 707 138 HOH HOH . G 5 HOH A 208 708 126 HOH HOH . G 5 HOH A 209 709 262 HOH HOH . G 5 HOH A 210 710 199 HOH HOH . G 5 HOH A 211 711 178 HOH HOH . G 5 HOH A 212 712 58 HOH HOH . G 5 HOH A 213 713 131 HOH HOH . G 5 HOH A 214 714 242 HOH HOH . G 5 HOH A 215 715 156 HOH HOH . G 5 HOH A 216 716 142 HOH HOH . G 5 HOH A 217 717 109 HOH HOH . G 5 HOH A 218 718 165 HOH HOH . G 5 HOH A 219 719 134 HOH HOH . G 5 HOH A 220 720 133 HOH HOH . G 5 HOH A 221 721 221 HOH HOH . G 5 HOH A 222 722 148 HOH HOH . G 5 HOH A 223 723 95 HOH HOH . G 5 HOH A 224 724 210 HOH HOH . G 5 HOH A 225 725 248 HOH HOH . G 5 HOH A 226 726 215 HOH HOH . G 5 HOH A 227 727 119 HOH HOH . G 5 HOH A 228 728 208 HOH HOH . G 5 HOH A 229 729 261 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.026 _atom_site.Cartn_y -1.229 _atom_site.Cartn_z 22.673 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #