data_7KJM # _model_server_result.job_id qFjxIG55RGGZRdX7kDF_uw _model_server_result.datetime_utc '2024-11-22 05:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kjm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7KJM # _exptl.entry_id 7KJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KJM _cell.length_a 37.355 _cell.length_b 38.451 _cell.length_c 138.022 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J 1 1 C,D,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C DGL 1 B DGL 1 1_555 B N DPN 2 B DPN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C DPN 2 B DPN 2 1_555 B N DTR 3 B DTR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C DTR 3 B DTR 3 1_555 B N DTY 4 B DTY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C DTY 4 B DTY 4 1_555 B N DVA 5 B DVA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 B C DVA 5 B DVA 5 1_555 B N DGL 6 B DGL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C DGL 6 B DGL 6 1_555 B N D0C 7 B D0C 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 B C D0C 7 B D0C 7 1_555 B N DGL 8 B DGL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 B C DGL 8 B DGL 8 1_555 B N DLY 9 B DLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 B C DLY 9 B DLY 9 1_555 B N DLE 10 B DLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C DLE 10 B DLE 10 1_555 B N DLE 11 B DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C DLE 11 B DLE 11 1_555 B N DAR 12 B DAR 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 D C DGL 1 D DGL 1 1_555 D N DPN 2 D DPN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 D C DPN 2 D DPN 2 1_555 D N DTR 3 D DTR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 D C DTR 3 D DTR 3 1_555 D N DTY 4 D DTY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale15 D C DTY 4 D DTY 4 1_555 D N DVA 5 D DVA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 D C DVA 5 D DVA 5 1_555 D N DGL 6 D DGL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 D C DGL 6 D DGL 6 1_555 D N D0C 7 D D0C 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 D C D0C 7 D D0C 7 1_555 D N DGL 8 D DGL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 D C DGL 8 D DGL 8 1_555 D N DLY 9 D DLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 D C DLY 9 D DLY 9 1_555 D N DLE 10 D DLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 D C DLE 10 D DLE 10 1_555 D N DLE 11 D DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale22 D C DLE 11 D DLE 11 1_555 D N DAR 12 D DAR 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 452 n n C1 C2 PEG sing 453 n n C1 H11 PEG sing 454 n n C1 H12 PEG sing 455 n n O1 HO1 PEG sing 456 n n C2 O2 PEG sing 457 n n C2 H21 PEG sing 458 n n C2 H22 PEG sing 459 n n O2 C3 PEG sing 460 n n C3 C4 PEG sing 461 n n C3 H31 PEG sing 462 n n C3 H32 PEG sing 463 n n C4 O4 PEG sing 464 n n C4 H41 PEG sing 465 n n C4 H42 PEG sing 466 n n O4 HO4 PEG sing 467 n n # _atom_sites.entry_id 7KJM _atom_sites.fract_transf_matrix[1][1] 0.02677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PEG A 1 201 1 PEG PEG . F 4 IPA A 1 202 1 IPA IPA . G 5 CL A 1 203 1 CL CL . H 5 CL A 1 204 2 CL CL . I 6 HOH A 1 301 196 HOH HOH . I 6 HOH A 2 302 162 HOH HOH . I 6 HOH A 3 303 99 HOH HOH . I 6 HOH A 4 304 17 HOH HOH . I 6 HOH A 5 305 97 HOH HOH . I 6 HOH A 6 306 171 HOH HOH . I 6 HOH A 7 307 23 HOH HOH . I 6 HOH A 8 308 139 HOH HOH . I 6 HOH A 9 309 12 HOH HOH . I 6 HOH A 10 310 38 HOH HOH . I 6 HOH A 11 311 104 HOH HOH . I 6 HOH A 12 312 15 HOH HOH . I 6 HOH A 13 313 119 HOH HOH . I 6 HOH A 14 314 43 HOH HOH . I 6 HOH A 15 315 29 HOH HOH . I 6 HOH A 16 316 75 HOH HOH . I 6 HOH A 17 317 84 HOH HOH . I 6 HOH A 18 318 4 HOH HOH . I 6 HOH A 19 319 160 HOH HOH . I 6 HOH A 20 320 116 HOH HOH . I 6 HOH A 21 321 68 HOH HOH . I 6 HOH A 22 322 128 HOH HOH . I 6 HOH A 23 323 54 HOH HOH . I 6 HOH A 24 324 86 HOH HOH . I 6 HOH A 25 325 28 HOH HOH . I 6 HOH A 26 326 157 HOH HOH . I 6 HOH A 27 327 126 HOH HOH . I 6 HOH A 28 328 65 HOH HOH . I 6 HOH A 29 329 66 HOH HOH . I 6 HOH A 30 330 33 HOH HOH . I 6 HOH A 31 331 5 HOH HOH . I 6 HOH A 32 332 22 HOH HOH . I 6 HOH A 33 333 179 HOH HOH . I 6 HOH A 34 334 52 HOH HOH . I 6 HOH A 35 335 11 HOH HOH . I 6 HOH A 36 336 149 HOH HOH . I 6 HOH A 37 337 71 HOH HOH . I 6 HOH A 38 338 166 HOH HOH . I 6 HOH A 39 339 31 HOH HOH . I 6 HOH A 40 340 191 HOH HOH . I 6 HOH A 41 341 20 HOH HOH . I 6 HOH A 42 342 132 HOH HOH . I 6 HOH A 43 343 9 HOH HOH . I 6 HOH A 44 344 153 HOH HOH . I 6 HOH A 45 345 51 HOH HOH . I 6 HOH A 46 346 47 HOH HOH . I 6 HOH A 47 347 41 HOH HOH . I 6 HOH A 48 348 2 HOH HOH . I 6 HOH A 49 349 78 HOH HOH . I 6 HOH A 50 350 141 HOH HOH . I 6 HOH A 51 351 194 HOH HOH . I 6 HOH A 52 352 150 HOH HOH . I 6 HOH A 53 353 95 HOH HOH . I 6 HOH A 54 354 82 HOH HOH . I 6 HOH A 55 355 76 HOH HOH . I 6 HOH A 56 356 129 HOH HOH . I 6 HOH A 57 357 158 HOH HOH . I 6 HOH A 58 358 175 HOH HOH . I 6 HOH A 59 359 103 HOH HOH . I 6 HOH A 60 360 83 HOH HOH . I 6 HOH A 61 361 102 HOH HOH . I 6 HOH A 62 362 87 HOH HOH . I 6 HOH A 63 363 94 HOH HOH . I 6 HOH A 64 364 186 HOH HOH . I 6 HOH A 65 365 142 HOH HOH . I 6 HOH A 66 366 56 HOH HOH . J 6 HOH B 1 101 81 HOH HOH . J 6 HOH B 2 102 7 HOH HOH . J 6 HOH B 3 103 18 HOH HOH . J 6 HOH B 4 104 118 HOH HOH . J 6 HOH B 5 105 50 HOH HOH . J 6 HOH B 6 106 16 HOH HOH . J 6 HOH B 7 107 26 HOH HOH . J 6 HOH B 8 108 138 HOH HOH . J 6 HOH B 9 109 198 HOH HOH . J 6 HOH B 10 110 199 HOH HOH . J 6 HOH B 11 111 167 HOH HOH . J 6 HOH B 12 112 108 HOH HOH . J 6 HOH B 13 113 195 HOH HOH . J 6 HOH B 14 114 183 HOH HOH . K 6 HOH C 1 201 163 HOH HOH . K 6 HOH C 2 202 48 HOH HOH . K 6 HOH C 3 203 197 HOH HOH . K 6 HOH C 4 204 58 HOH HOH . K 6 HOH C 5 205 27 HOH HOH . K 6 HOH C 6 206 24 HOH HOH . K 6 HOH C 7 207 120 HOH HOH . K 6 HOH C 8 208 169 HOH HOH . K 6 HOH C 9 209 156 HOH HOH . K 6 HOH C 10 210 89 HOH HOH . K 6 HOH C 11 211 72 HOH HOH . K 6 HOH C 12 212 88 HOH HOH . K 6 HOH C 13 213 143 HOH HOH . K 6 HOH C 14 214 44 HOH HOH . K 6 HOH C 15 215 79 HOH HOH . K 6 HOH C 16 216 85 HOH HOH . K 6 HOH C 17 217 98 HOH HOH . K 6 HOH C 18 218 34 HOH HOH . K 6 HOH C 19 219 107 HOH HOH . K 6 HOH C 20 220 123 HOH HOH . K 6 HOH C 21 221 10 HOH HOH . K 6 HOH C 22 222 19 HOH HOH . K 6 HOH C 23 223 49 HOH HOH . K 6 HOH C 24 224 8 HOH HOH . K 6 HOH C 25 225 3 HOH HOH . K 6 HOH C 26 226 91 HOH HOH . K 6 HOH C 27 227 117 HOH HOH . K 6 HOH C 28 228 6 HOH HOH . K 6 HOH C 29 229 45 HOH HOH . K 6 HOH C 30 230 100 HOH HOH . K 6 HOH C 31 231 42 HOH HOH . K 6 HOH C 32 232 168 HOH HOH . K 6 HOH C 33 233 13 HOH HOH . K 6 HOH C 34 234 25 HOH HOH . K 6 HOH C 35 235 14 HOH HOH . K 6 HOH C 36 236 39 HOH HOH . K 6 HOH C 37 237 90 HOH HOH . K 6 HOH C 38 238 110 HOH HOH . K 6 HOH C 39 239 144 HOH HOH . K 6 HOH C 40 240 77 HOH HOH . K 6 HOH C 41 241 53 HOH HOH . K 6 HOH C 42 242 40 HOH HOH . K 6 HOH C 43 243 64 HOH HOH . K 6 HOH C 44 244 115 HOH HOH . K 6 HOH C 45 245 124 HOH HOH . K 6 HOH C 46 246 122 HOH HOH . K 6 HOH C 47 247 112 HOH HOH . K 6 HOH C 48 248 155 HOH HOH . K 6 HOH C 49 249 109 HOH HOH . K 6 HOH C 50 250 1 HOH HOH . K 6 HOH C 51 251 133 HOH HOH . K 6 HOH C 52 252 111 HOH HOH . K 6 HOH C 53 253 130 HOH HOH . K 6 HOH C 54 254 180 HOH HOH . K 6 HOH C 55 255 131 HOH HOH . K 6 HOH C 56 256 135 HOH HOH . K 6 HOH C 57 257 190 HOH HOH . K 6 HOH C 58 258 106 HOH HOH . K 6 HOH C 59 259 145 HOH HOH . K 6 HOH C 60 260 93 HOH HOH . K 6 HOH C 61 261 164 HOH HOH . K 6 HOH C 62 262 80 HOH HOH . K 6 HOH C 63 263 134 HOH HOH . K 6 HOH C 64 264 60 HOH HOH . K 6 HOH C 65 265 181 HOH HOH . K 6 HOH C 66 266 140 HOH HOH . K 6 HOH C 67 267 170 HOH HOH . K 6 HOH C 68 268 74 HOH HOH . K 6 HOH C 69 269 37 HOH HOH . K 6 HOH C 70 270 187 HOH HOH . K 6 HOH C 71 271 147 HOH HOH . K 6 HOH C 72 272 67 HOH HOH . K 6 HOH C 73 273 105 HOH HOH . K 6 HOH C 74 274 137 HOH HOH . K 6 HOH C 75 275 125 HOH HOH . K 6 HOH C 76 276 69 HOH HOH . K 6 HOH C 77 277 121 HOH HOH . K 6 HOH C 78 278 152 HOH HOH . L 6 HOH D 1 101 136 HOH HOH . L 6 HOH D 2 102 113 HOH HOH . L 6 HOH D 3 103 57 HOH HOH . L 6 HOH D 4 104 59 HOH HOH . L 6 HOH D 5 105 55 HOH HOH . L 6 HOH D 6 106 30 HOH HOH . L 6 HOH D 7 107 61 HOH HOH . L 6 HOH D 8 108 36 HOH HOH . L 6 HOH D 9 109 21 HOH HOH . L 6 HOH D 10 110 32 HOH HOH . L 6 HOH D 11 111 148 HOH HOH . L 6 HOH D 12 112 62 HOH HOH . L 6 HOH D 13 113 46 HOH HOH . L 6 HOH D 14 114 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . A . E 3 -10.767 -14.369 13.361 0.62 18.46 ? C1 PEG 201 A 1 HETATM 2 C C1 PEG . B . E 3 -11.581 -13.974 12.968 0.38 25.49 ? C1 PEG 201 A 1 HETATM 3 O O1 PEG . A . E 3 -12.166 -14.487 13.278 0.62 26.35 ? O1 PEG 201 A 1 HETATM 4 O O1 PEG . B . E 3 -10.56 -14.652 13.625 0.38 26.08 ? O1 PEG 201 A 1 HETATM 5 C C2 PEG . A . E 3 -10.309 -13.31 12.308 0.62 25.43 ? C2 PEG 201 A 1 HETATM 6 C C2 PEG . B . E 3 -11.053 -13.144 11.825 0.38 27.15 ? C2 PEG 201 A 1 HETATM 7 O O2 PEG . A . E 3 -11.3 -12.93 11.384 0.62 28.04 ? O2 PEG 201 A 1 HETATM 8 O O2 PEG . B . E 3 -11.675 -11.866 11.79 0.38 28.62 ? O2 PEG 201 A 1 HETATM 9 C C3 PEG . A . E 3 -11.95 -11.676 11.379 0.62 29.28 ? C3 PEG 201 A 1 HETATM 10 C C3 PEG . B . E 3 -11.142 -11.002 10.789 0.38 28.11 ? C3 PEG 201 A 1 HETATM 11 C C4 PEG . A . E 3 -11.103 -10.675 10.573 0.62 28.1 ? C4 PEG 201 A 1 HETATM 12 C C4 PEG . B . E 3 -9.987 -10.236 11.347 0.38 29.77 ? C4 PEG 201 A 1 HETATM 13 O O4 PEG . A . E 3 -10.577 -11.257 9.395 0.62 30.7 ? O4 PEG 201 A 1 HETATM 14 O O4 PEG . B . E 3 -10.266 -8.862 11.499 0.38 32.13 ? O4 PEG 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #