data_7KKH # _model_server_result.job_id gy5acAK20GIExx-SJibdjQ _model_server_result.datetime_utc '2024-10-15 16:19:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 7KKH # _exptl.entry_id 7KKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.657 _cell.angle_gamma 90 _cell.entry_id 7KKH _cell.length_a 103.782 _cell.length_b 71.302 _cell.length_c 86.793 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 37 1_555 A SG CYS 87 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 136 A CYS 153 1_555 A SG CYS 195 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 213 A CYS 230 1_555 B SG CYS 221 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 B SG CYS 145 B CYS 145 1_555 B SG CYS 201 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc1 A OE2 GLU 82 A GLU 99 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A OH TYR 174 A TYR 191 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc3 C NA NA . A NA 301 1_555 F O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc4 C NA NA . A NA 301 1_555 F O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 B O VAL 157 B VAL 157 1_555 E NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc6 B OG1 THR 170 B THR 170 1_555 E NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc7 E NA NA . B NA 302 1_555 G O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KKH _atom_sites.fract_transf_matrix[1][1] 0.009636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 301 1 NA NA . D 4 91S B 1 301 201 91S LIG . E 3 NA B 1 302 2 NA NA . F 5 HOH A 1 401 193 HOH HOH . F 5 HOH A 2 402 218 HOH HOH . F 5 HOH A 3 403 14 HOH HOH . F 5 HOH A 4 404 25 HOH HOH . F 5 HOH A 5 405 66 HOH HOH . F 5 HOH A 6 406 2 HOH HOH . F 5 HOH A 7 407 82 HOH HOH . F 5 HOH A 8 408 6 HOH HOH . F 5 HOH A 9 409 55 HOH HOH . F 5 HOH A 10 410 85 HOH HOH . F 5 HOH A 11 411 38 HOH HOH . F 5 HOH A 12 412 73 HOH HOH . F 5 HOH A 13 413 248 HOH HOH . F 5 HOH A 14 414 121 HOH HOH . F 5 HOH A 15 415 1 HOH HOH . F 5 HOH A 16 416 4 HOH HOH . F 5 HOH A 17 417 33 HOH HOH . F 5 HOH A 18 418 16 HOH HOH . F 5 HOH A 19 419 147 HOH HOH . F 5 HOH A 20 420 29 HOH HOH . F 5 HOH A 21 421 48 HOH HOH . F 5 HOH A 22 422 21 HOH HOH . F 5 HOH A 23 423 43 HOH HOH . F 5 HOH A 24 424 72 HOH HOH . F 5 HOH A 25 425 76 HOH HOH . F 5 HOH A 26 426 41 HOH HOH . F 5 HOH A 27 427 3 HOH HOH . F 5 HOH A 28 428 40 HOH HOH . F 5 HOH A 29 429 57 HOH HOH . F 5 HOH A 30 430 164 HOH HOH . F 5 HOH A 31 431 209 HOH HOH . F 5 HOH A 32 432 36 HOH HOH . F 5 HOH A 33 433 8 HOH HOH . F 5 HOH A 34 434 49 HOH HOH . F 5 HOH A 35 435 171 HOH HOH . F 5 HOH A 36 436 78 HOH HOH . F 5 HOH A 37 437 74 HOH HOH . F 5 HOH A 38 438 13 HOH HOH . F 5 HOH A 39 439 149 HOH HOH . F 5 HOH A 40 440 111 HOH HOH . F 5 HOH A 41 441 27 HOH HOH . F 5 HOH A 42 442 146 HOH HOH . F 5 HOH A 43 443 112 HOH HOH . F 5 HOH A 44 444 155 HOH HOH . F 5 HOH A 45 445 32 HOH HOH . F 5 HOH A 46 446 30 HOH HOH . F 5 HOH A 47 447 157 HOH HOH . F 5 HOH A 48 448 79 HOH HOH . F 5 HOH A 49 449 235 HOH HOH . F 5 HOH A 50 450 68 HOH HOH . F 5 HOH A 51 451 37 HOH HOH . F 5 HOH A 52 452 91 HOH HOH . F 5 HOH A 53 453 22 HOH HOH . F 5 HOH A 54 454 239 HOH HOH . F 5 HOH A 55 455 45 HOH HOH . F 5 HOH A 56 456 127 HOH HOH . F 5 HOH A 57 457 106 HOH HOH . F 5 HOH A 58 458 61 HOH HOH . F 5 HOH A 59 459 195 HOH HOH . F 5 HOH A 60 460 17 HOH HOH . F 5 HOH A 61 461 249 HOH HOH . F 5 HOH A 62 462 24 HOH HOH . F 5 HOH A 63 463 51 HOH HOH . F 5 HOH A 64 464 117 HOH HOH . F 5 HOH A 65 465 77 HOH HOH . F 5 HOH A 66 466 58 HOH HOH . F 5 HOH A 67 467 50 HOH HOH . F 5 HOH A 68 468 134 HOH HOH . F 5 HOH A 69 469 124 HOH HOH . F 5 HOH A 70 470 188 HOH HOH . F 5 HOH A 71 471 158 HOH HOH . F 5 HOH A 72 472 206 HOH HOH . F 5 HOH A 73 473 70 HOH HOH . F 5 HOH A 74 474 88 HOH HOH . F 5 HOH A 75 475 62 HOH HOH . F 5 HOH A 76 476 100 HOH HOH . F 5 HOH A 77 477 162 HOH HOH . F 5 HOH A 78 478 103 HOH HOH . F 5 HOH A 79 479 210 HOH HOH . F 5 HOH A 80 480 94 HOH HOH . F 5 HOH A 81 481 227 HOH HOH . F 5 HOH A 82 482 172 HOH HOH . F 5 HOH A 83 483 56 HOH HOH . F 5 HOH A 84 484 5 HOH HOH . F 5 HOH A 85 485 182 HOH HOH . F 5 HOH A 86 486 205 HOH HOH . F 5 HOH A 87 487 28 HOH HOH . F 5 HOH A 88 488 126 HOH HOH . F 5 HOH A 89 489 176 HOH HOH . F 5 HOH A 90 490 212 HOH HOH . F 5 HOH A 91 491 67 HOH HOH . F 5 HOH A 92 492 194 HOH HOH . F 5 HOH A 93 493 234 HOH HOH . F 5 HOH A 94 494 140 HOH HOH . F 5 HOH A 95 495 89 HOH HOH . F 5 HOH A 96 496 170 HOH HOH . F 5 HOH A 97 497 173 HOH HOH . F 5 HOH A 98 498 133 HOH HOH . F 5 HOH A 99 499 60 HOH HOH . F 5 HOH A 100 500 177 HOH HOH . F 5 HOH A 101 501 208 HOH HOH . F 5 HOH A 102 502 226 HOH HOH . F 5 HOH A 103 503 161 HOH HOH . F 5 HOH A 104 504 87 HOH HOH . F 5 HOH A 105 505 246 HOH HOH . F 5 HOH A 106 506 39 HOH HOH . F 5 HOH A 107 507 257 HOH HOH . F 5 HOH A 108 508 144 HOH HOH . F 5 HOH A 109 509 138 HOH HOH . F 5 HOH A 110 510 135 HOH HOH . F 5 HOH A 111 511 253 HOH HOH . G 5 HOH B 1 401 224 HOH HOH . G 5 HOH B 2 402 128 HOH HOH . G 5 HOH B 3 403 110 HOH HOH . G 5 HOH B 4 404 236 HOH HOH . G 5 HOH B 5 405 109 HOH HOH . G 5 HOH B 6 406 84 HOH HOH . G 5 HOH B 7 407 125 HOH HOH . G 5 HOH B 8 408 102 HOH HOH . G 5 HOH B 9 409 108 HOH HOH . G 5 HOH B 10 410 178 HOH HOH . G 5 HOH B 11 411 219 HOH HOH . G 5 HOH B 12 412 215 HOH HOH . G 5 HOH B 13 413 7 HOH HOH . G 5 HOH B 14 414 165 HOH HOH . G 5 HOH B 15 415 167 HOH HOH . G 5 HOH B 16 416 150 HOH HOH . G 5 HOH B 17 417 129 HOH HOH . G 5 HOH B 18 418 220 HOH HOH . G 5 HOH B 19 419 237 HOH HOH . G 5 HOH B 20 420 225 HOH HOH . G 5 HOH B 21 421 118 HOH HOH . G 5 HOH B 22 422 254 HOH HOH . G 5 HOH B 23 423 63 HOH HOH . G 5 HOH B 24 424 202 HOH HOH . G 5 HOH B 25 425 12 HOH HOH . G 5 HOH B 26 426 10 HOH HOH . G 5 HOH B 27 427 52 HOH HOH . G 5 HOH B 28 428 99 HOH HOH . G 5 HOH B 29 429 97 HOH HOH . G 5 HOH B 30 430 120 HOH HOH . G 5 HOH B 31 431 230 HOH HOH . G 5 HOH B 32 432 136 HOH HOH . G 5 HOH B 33 433 26 HOH HOH . G 5 HOH B 34 434 23 HOH HOH . G 5 HOH B 35 435 180 HOH HOH . G 5 HOH B 36 436 42 HOH HOH . G 5 HOH B 37 437 90 HOH HOH . G 5 HOH B 38 438 75 HOH HOH . G 5 HOH B 39 439 35 HOH HOH . G 5 HOH B 40 440 252 HOH HOH . G 5 HOH B 41 441 46 HOH HOH . G 5 HOH B 42 442 95 HOH HOH . G 5 HOH B 43 443 83 HOH HOH . G 5 HOH B 44 444 174 HOH HOH . G 5 HOH B 45 445 104 HOH HOH . G 5 HOH B 46 446 20 HOH HOH . G 5 HOH B 47 447 81 HOH HOH . G 5 HOH B 48 448 69 HOH HOH . G 5 HOH B 49 449 19 HOH HOH . G 5 HOH B 50 450 191 HOH HOH . G 5 HOH B 51 451 92 HOH HOH . G 5 HOH B 52 452 166 HOH HOH . G 5 HOH B 53 453 11 HOH HOH . G 5 HOH B 54 454 153 HOH HOH . G 5 HOH B 55 455 113 HOH HOH . G 5 HOH B 56 456 59 HOH HOH . G 5 HOH B 57 457 154 HOH HOH . G 5 HOH B 58 458 197 HOH HOH . G 5 HOH B 59 459 145 HOH HOH . G 5 HOH B 60 460 141 HOH HOH . G 5 HOH B 61 461 213 HOH HOH . G 5 HOH B 62 462 54 HOH HOH . G 5 HOH B 63 463 233 HOH HOH . G 5 HOH B 64 464 189 HOH HOH . G 5 HOH B 65 465 190 HOH HOH . G 5 HOH B 66 466 96 HOH HOH . G 5 HOH B 67 467 207 HOH HOH . G 5 HOH B 68 468 15 HOH HOH . G 5 HOH B 69 469 53 HOH HOH . G 5 HOH B 70 470 256 HOH HOH . G 5 HOH B 71 471 199 HOH HOH . G 5 HOH B 72 472 80 HOH HOH . G 5 HOH B 73 473 114 HOH HOH . G 5 HOH B 74 474 123 HOH HOH . G 5 HOH B 75 475 247 HOH HOH . G 5 HOH B 76 476 240 HOH HOH . G 5 HOH B 77 477 116 HOH HOH . G 5 HOH B 78 478 47 HOH HOH . G 5 HOH B 79 479 223 HOH HOH . G 5 HOH B 80 480 44 HOH HOH . G 5 HOH B 81 481 98 HOH HOH . G 5 HOH B 82 482 185 HOH HOH . G 5 HOH B 83 483 214 HOH HOH . G 5 HOH B 84 484 107 HOH HOH . G 5 HOH B 85 485 119 HOH HOH . G 5 HOH B 86 486 242 HOH HOH . G 5 HOH B 87 487 156 HOH HOH . G 5 HOH B 88 488 168 HOH HOH . G 5 HOH B 89 489 142 HOH HOH . G 5 HOH B 90 490 184 HOH HOH . G 5 HOH B 91 491 122 HOH HOH . G 5 HOH B 92 492 132 HOH HOH . G 5 HOH B 93 493 163 HOH HOH . G 5 HOH B 94 494 203 HOH HOH . G 5 HOH B 95 495 175 HOH HOH . G 5 HOH B 96 496 18 HOH HOH . G 5 HOH B 97 497 186 HOH HOH . G 5 HOH B 98 498 169 HOH HOH . G 5 HOH B 99 499 143 HOH HOH . G 5 HOH B 100 500 187 HOH HOH . G 5 HOH B 101 501 131 HOH HOH . G 5 HOH B 102 502 137 HOH HOH . G 5 HOH B 103 503 31 HOH HOH . G 5 HOH B 104 504 34 HOH HOH . G 5 HOH B 105 505 201 HOH HOH . G 5 HOH B 106 506 217 HOH HOH . G 5 HOH B 107 507 250 HOH HOH . G 5 HOH B 108 508 179 HOH HOH . G 5 HOH B 109 509 139 HOH HOH . G 5 HOH B 110 510 258 HOH HOH . G 5 HOH B 111 511 251 HOH HOH . G 5 HOH B 112 512 64 HOH HOH . G 5 HOH B 113 513 221 HOH HOH . G 5 HOH B 114 514 204 HOH HOH . G 5 HOH B 115 515 192 HOH HOH . G 5 HOH B 116 516 181 HOH HOH . G 5 HOH B 117 517 183 HOH HOH . G 5 HOH B 118 518 105 HOH HOH . G 5 HOH B 119 519 255 HOH HOH . G 5 HOH B 120 520 151 HOH HOH . G 5 HOH B 121 521 241 HOH HOH . G 5 HOH B 122 522 159 HOH HOH . G 5 HOH B 123 523 198 HOH HOH . G 5 HOH B 124 524 211 HOH HOH . G 5 HOH B 125 525 196 HOH HOH . G 5 HOH B 126 526 238 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.93 _atom_site.Cartn_y 16.909 _atom_site.Cartn_z -5.92 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #