data_7KL1
#
_model_server_result.job_id            KDJj7N5KON6QOS3U1gyT1Q 
_model_server_result.datetime_utc      '2024-11-09 01:51:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kl1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1401}' 
#
_entry.id    7KL1 
#
_exptl.entry_id    7KL1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KL1 
_cell.length_a            72.893 
_cell.length_b            92.133 
_cell.length_c            91.338 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KL1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,J,L,N 1 1 
B,D,G,H,I,K,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C CG ASP 15 C ASP 1303 1_555 J O3G ATP . C ATP 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 D CG ASP 15 D ASP 1303 1_555 K O3G ATP . D ATP 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? 
metalc ? metalc1 A OD1 ASN 134 A ASN 140 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc2 A OD2 ASP 150 A ASP 156 1_555 F MG MG . A MG 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc3 F MG MG . A MG 302 1_555 J O2A ATP . C ATP 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc4 F MG MG . A MG 302 1_555 J O3A ATP . C ATP 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc5 F MG MG . A MG 302 1_555 J O2B ATP . C ATP 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc6 B OD1 ASN 134 B ASN 140 1_555 I MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc7 B OD2 ASP 150 B ASP 156 1_555 I MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc8 I MG MG . B MG 303 1_555 M O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc9 I MG MG . B MG 303 1_555 K O2B ATP . D ATP 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc10 I MG MG . B MG 303 1_555 K O2A ATP . D ATP 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc11 I MG MG . B MG 303 1_555 O O HOH . D HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7KL1 
_atom_sites.fract_transf_matrix[1][1]    0.013719 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010854 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO A 1 301 6 EDO EDO . 
F 4 MG A 1 302 307 MG MG . 
G 3 EDO B 1 301 2 EDO EDO . 
H 3 EDO B 1 302 4 EDO EDO . 
I 4 MG B 1 303 308 MG MG . 
J 5 ATP C 1 1401 301 ATP ATP . 
K 5 ATP D 1 1401 301 ATP ATP . 
L 6 HOH A 1 401 12 HOH HOH . 
L 6 HOH A 2 402 1 HOH HOH . 
L 6 HOH A 3 403 135 HOH HOH . 
L 6 HOH A 4 404 23 HOH HOH . 
L 6 HOH A 5 405 30 HOH HOH . 
L 6 HOH A 6 406 2 HOH HOH . 
L 6 HOH A 7 407 14 HOH HOH . 
L 6 HOH A 8 408 163 HOH HOH . 
L 6 HOH A 9 409 43 HOH HOH . 
L 6 HOH A 10 410 19 HOH HOH . 
L 6 HOH A 11 411 25 HOH HOH . 
L 6 HOH A 12 412 6 HOH HOH . 
L 6 HOH A 13 413 22 HOH HOH . 
L 6 HOH A 14 414 134 HOH HOH . 
L 6 HOH A 15 415 36 HOH HOH . 
L 6 HOH A 16 416 20 HOH HOH . 
L 6 HOH A 17 417 37 HOH HOH . 
L 6 HOH A 18 418 128 HOH HOH . 
L 6 HOH A 19 419 8 HOH HOH . 
L 6 HOH A 20 420 48 HOH HOH . 
L 6 HOH A 21 421 156 HOH HOH . 
L 6 HOH A 22 422 39 HOH HOH . 
L 6 HOH A 23 423 41 HOH HOH . 
L 6 HOH A 24 424 32 HOH HOH . 
L 6 HOH A 25 425 154 HOH HOH . 
L 6 HOH A 26 426 40 HOH HOH . 
L 6 HOH A 27 427 15 HOH HOH . 
L 6 HOH A 28 428 133 HOH HOH . 
L 6 HOH A 29 429 53 HOH HOH . 
L 6 HOH A 30 430 17 HOH HOH . 
L 6 HOH A 31 431 159 HOH HOH . 
L 6 HOH A 32 432 16 HOH HOH . 
L 6 HOH A 33 433 13 HOH HOH . 
L 6 HOH A 34 434 136 HOH HOH . 
L 6 HOH A 35 435 31 HOH HOH . 
L 6 HOH A 36 436 38 HOH HOH . 
L 6 HOH A 37 437 169 HOH HOH . 
L 6 HOH A 38 438 177 HOH HOH . 
L 6 HOH A 39 439 68 HOH HOH . 
L 6 HOH A 40 440 129 HOH HOH . 
L 6 HOH A 41 441 18 HOH HOH . 
L 6 HOH A 42 442 120 HOH HOH . 
L 6 HOH A 43 443 33 HOH HOH . 
L 6 HOH A 44 444 157 HOH HOH . 
L 6 HOH A 45 445 28 HOH HOH . 
L 6 HOH A 46 446 45 HOH HOH . 
L 6 HOH A 47 447 24 HOH HOH . 
L 6 HOH A 48 448 9 HOH HOH . 
L 6 HOH A 49 449 5 HOH HOH . 
M 6 HOH B 1 401 100 HOH HOH . 
M 6 HOH B 2 402 111 HOH HOH . 
M 6 HOH B 3 403 170 HOH HOH . 
M 6 HOH B 4 404 72 HOH HOH . 
M 6 HOH B 5 405 152 HOH HOH . 
M 6 HOH B 6 406 131 HOH HOH . 
M 6 HOH B 7 407 142 HOH HOH . 
M 6 HOH B 8 408 94 HOH HOH . 
M 6 HOH B 9 409 75 HOH HOH . 
M 6 HOH B 10 410 179 HOH HOH . 
M 6 HOH B 11 411 84 HOH HOH . 
M 6 HOH B 12 412 67 HOH HOH . 
M 6 HOH B 13 413 144 HOH HOH . 
M 6 HOH B 14 414 47 HOH HOH . 
M 6 HOH B 15 415 139 HOH HOH . 
M 6 HOH B 16 416 102 HOH HOH . 
M 6 HOH B 17 417 57 HOH HOH . 
M 6 HOH B 18 418 55 HOH HOH . 
M 6 HOH B 19 419 71 HOH HOH . 
M 6 HOH B 20 420 108 HOH HOH . 
M 6 HOH B 21 421 69 HOH HOH . 
M 6 HOH B 22 422 99 HOH HOH . 
M 6 HOH B 23 423 56 HOH HOH . 
M 6 HOH B 24 424 79 HOH HOH . 
M 6 HOH B 25 425 87 HOH HOH . 
M 6 HOH B 26 426 101 HOH HOH . 
M 6 HOH B 27 427 146 HOH HOH . 
M 6 HOH B 28 428 77 HOH HOH . 
M 6 HOH B 29 429 167 HOH HOH . 
M 6 HOH B 30 430 93 HOH HOH . 
M 6 HOH B 31 431 104 HOH HOH . 
M 6 HOH B 32 432 97 HOH HOH . 
M 6 HOH B 33 433 78 HOH HOH . 
M 6 HOH B 34 434 105 HOH HOH . 
M 6 HOH B 35 435 148 HOH HOH . 
M 6 HOH B 36 436 88 HOH HOH . 
M 6 HOH B 37 437 92 HOH HOH . 
M 6 HOH B 38 438 162 HOH HOH . 
M 6 HOH B 39 439 119 HOH HOH . 
M 6 HOH B 40 440 60 HOH HOH . 
M 6 HOH B 41 441 107 HOH HOH . 
M 6 HOH B 42 442 174 HOH HOH . 
M 6 HOH B 43 443 91 HOH HOH . 
M 6 HOH B 44 444 96 HOH HOH . 
M 6 HOH B 45 445 109 HOH HOH . 
M 6 HOH B 46 446 90 HOH HOH . 
M 6 HOH B 47 447 173 HOH HOH . 
M 6 HOH B 48 448 113 HOH HOH . 
M 6 HOH B 49 449 106 HOH HOH . 
M 6 HOH B 50 450 132 HOH HOH . 
M 6 HOH B 51 451 89 HOH HOH . 
M 6 HOH B 52 452 81 HOH HOH . 
M 6 HOH B 53 453 116 HOH HOH . 
M 6 HOH B 54 454 151 HOH HOH . 
M 6 HOH B 55 455 103 HOH HOH . 
M 6 HOH B 56 456 61 HOH HOH . 
M 6 HOH B 57 457 165 HOH HOH . 
M 6 HOH B 58 458 86 HOH HOH . 
M 6 HOH B 59 459 51 HOH HOH . 
M 6 HOH B 60 460 143 HOH HOH . 
M 6 HOH B 61 461 172 HOH HOH . 
M 6 HOH B 62 462 95 HOH HOH . 
N 6 HOH C 1 1501 164 HOH HOH . 
N 6 HOH C 2 1502 112 HOH HOH . 
N 6 HOH C 3 1503 44 HOH HOH . 
O 6 HOH D 1 1501 180 HOH HOH . 
O 6 HOH D 2 1502 121 HOH HOH . 
O 6 HOH D 3 1503 118 HOH HOH . 
O 6 HOH D 4 1504 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . K 5 25.968 -5.27 7.717 1 33.69 ? PG ATP 1401 D 1 
HETATM 2 O O1G ATP . . . K 5 24.669 -5.776 7.114 1 34.4 ? O1G ATP 1401 D 1 
HETATM 3 O O2G ATP . . . K 5 25.755 -3.956 8.468 1 31.14 ? O2G ATP 1401 D 1 
HETATM 4 O O3G ATP . . . K 5 26.759 -6.299 8.558 1 33.8 ? O3G ATP 1401 D 1 
HETATM 5 P PB ATP . . . K 5 27.53 -5.804 5.278 1 30.85 ? PB ATP 1401 D 1 
HETATM 6 O O1B ATP . . . K 5 29.015 -5.926 5.479 1 27.39 ? O1B ATP 1401 D 1 
HETATM 7 O O2B ATP . . . K 5 26.716 -7.064 5.115 1 25.18 ? O2B ATP 1401 D 1 
HETATM 8 O O3B ATP . . . K 5 26.94 -4.959 6.494 1 29.9 ? O3B ATP 1401 D 1 
HETATM 9 P PA ATP . . . K 5 25.923 -4.241 3.337 1 25.56 ? PA ATP 1401 D 1 
HETATM 10 O O1A ATP . . . K 5 25.375 -3.022 4.008 1 27.04 ? O1A ATP 1401 D 1 
HETATM 11 O O2A ATP . . . K 5 24.943 -5.365 3.198 1 22.6 ? O2A ATP 1401 D 1 
HETATM 12 O O3A ATP . . . K 5 27.239 -4.714 4.126 1 24 ? O3A ATP 1401 D 1 
HETATM 13 O O5' ATP . . . K 5 26.557 -3.812 1.901 1 24.23 ? O5' ATP 1401 D 1 
HETATM 14 C C5' ATP . . . K 5 26.795 -4.703 0.776 1 25.01 ? C5' ATP 1401 D 1 
HETATM 15 C C4' ATP . . . K 5 25.711 -4.52 -0.272 1 25.94 ? C4' ATP 1401 D 1 
HETATM 16 O O4' ATP . . . K 5 26.204 -4.861 -1.605 1 23.55 ? O4' ATP 1401 D 1 
HETATM 17 C C3' ATP . . . K 5 24.46 -5.395 -0.11 1 24.44 ? C3' ATP 1401 D 1 
HETATM 18 O O3' ATP . . . K 5 23.371 -4.767 -0.769 1 24.97 ? O3' ATP 1401 D 1 
HETATM 19 C C2' ATP . . . K 5 24.869 -6.649 -0.881 1 24.59 ? C2' ATP 1401 D 1 
HETATM 20 O O2' ATP . . . K 5 23.777 -7.438 -1.286 1 26.45 ? O2' ATP 1401 D 1 
HETATM 21 C C1' ATP . . . K 5 25.519 -6.003 -2.096 1 23.5 ? C1' ATP 1401 D 1 
HETATM 22 N N9 ATP . . . K 5 26.47 -6.854 -2.818 1 22.83 ? N9 ATP 1401 D 1 
HETATM 23 C C8 ATP . . . K 5 27.689 -7.33 -2.377 1 22.77 ? C8 ATP 1401 D 1 
HETATM 24 N N7 ATP . . . K 5 28.334 -8.016 -3.291 1 21.05 ? N7 ATP 1401 D 1 
HETATM 25 C C5 ATP . . . K 5 27.499 -7.987 -4.398 1 21.44 ? C5 ATP 1401 D 1 
HETATM 26 C C6 ATP . . . K 5 27.617 -8.541 -5.686 1 21.82 ? C6 ATP 1401 D 1 
HETATM 27 N N6 ATP . . . K 5 28.677 -9.227 -6.104 1 22.46 ? N6 ATP 1401 D 1 
HETATM 28 N N1 ATP . . . K 5 26.607 -8.316 -6.553 1 21.35 ? N1 ATP 1401 D 1 
HETATM 29 C C2 ATP . . . K 5 25.555 -7.601 -6.134 1 22.26 ? C2 ATP 1401 D 1 
HETATM 30 N N3 ATP . . . K 5 25.328 -7.036 -4.95 1 22.27 ? N3 ATP 1401 D 1 
HETATM 31 C C4 ATP . . . K 5 26.354 -7.271 -4.118 1 22.39 ? C4 ATP 1401 D 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#