data_7KL3 # _model_server_result.job_id yN7sV9PgnLDarZkEnudw5w _model_server_result.datetime_utc '2024-11-28 19:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7KL3 # _exptl.entry_id 7KL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KL3 _cell.length_a 89.202 _cell.length_b 89.202 _cell.length_c 134.246 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' G 2 B G 2 1_555 G S1 RQA . B RQA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale2 F P AMP . B AMP 201 1_555 G O5 RQA . B RQA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 52 n n P O2P AMP sing 53 n n P O3P AMP sing 54 n n P O5' AMP sing 55 n n O2P HOP2 AMP sing 56 n n O3P HOP3 AMP sing 57 n n O5' C5' AMP sing 58 n n C5' C4' AMP sing 59 n n C5' "H5'1" AMP sing 60 n n C5' "H5'2" AMP sing 61 n n C4' O4' AMP sing 62 n n C4' C3' AMP sing 63 n n C4' H4' AMP sing 64 n n O4' C1' AMP sing 65 n n C3' O3' AMP sing 66 n n C3' C2' AMP sing 67 n n C3' H3' AMP sing 68 n n O3' HO3' AMP sing 69 n n C2' O2' AMP sing 70 n n C2' C1' AMP sing 71 n n C2' H2' AMP sing 72 n n O2' HO2' AMP sing 73 n n C1' N9 AMP sing 74 n n C1' H1' AMP sing 75 n n N9 C8 AMP sing 76 n y N9 C4 AMP sing 77 n y C8 N7 AMP doub 78 n y C8 H8 AMP sing 79 n n N7 C5 AMP sing 80 n y C5 C6 AMP sing 81 n y C5 C4 AMP doub 82 n y C6 N6 AMP sing 83 n n C6 N1 AMP doub 84 n y N6 HN61 AMP sing 85 n n N6 HN62 AMP sing 86 n n N1 C2 AMP sing 87 n y C2 N3 AMP doub 88 n y C2 H2 AMP sing 89 n n N3 C4 AMP sing 90 n y # _atom_sites.entry_id 7KL3 _atom_sites.fract_transf_matrix[1][1] 0.011211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 201 GOL GOL . D 4 SO4 A 1 202 1 SO4 SO4 . E 4 SO4 A 1 203 2 SO4 SO4 . F 5 AMP B 1 201 4 AMP A . G 6 RQA B 1 202 3 RQA CRS . H 7 HOH A 1 301 43 HOH HOH . H 7 HOH A 2 302 51 HOH HOH . H 7 HOH A 3 303 39 HOH HOH . H 7 HOH A 4 304 99 HOH HOH . H 7 HOH A 5 305 73 HOH HOH . H 7 HOH A 6 306 26 HOH HOH . H 7 HOH A 7 307 98 HOH HOH . H 7 HOH A 8 308 71 HOH HOH . H 7 HOH A 9 309 68 HOH HOH . H 7 HOH A 10 310 77 HOH HOH . H 7 HOH A 11 311 88 HOH HOH . H 7 HOH A 12 312 19 HOH HOH . H 7 HOH A 13 313 8 HOH HOH . H 7 HOH A 14 314 94 HOH HOH . H 7 HOH A 15 315 22 HOH HOH . H 7 HOH A 16 316 1 HOH HOH . H 7 HOH A 17 317 44 HOH HOH . H 7 HOH A 18 318 20 HOH HOH . H 7 HOH A 19 319 23 HOH HOH . H 7 HOH A 20 320 106 HOH HOH . H 7 HOH A 21 321 4 HOH HOH . H 7 HOH A 22 322 11 HOH HOH . H 7 HOH A 23 323 33 HOH HOH . H 7 HOH A 24 324 13 HOH HOH . H 7 HOH A 25 325 48 HOH HOH . H 7 HOH A 26 326 34 HOH HOH . H 7 HOH A 27 327 36 HOH HOH . H 7 HOH A 28 328 57 HOH HOH . H 7 HOH A 29 329 41 HOH HOH . H 7 HOH A 30 330 62 HOH HOH . H 7 HOH A 31 331 25 HOH HOH . H 7 HOH A 32 332 17 HOH HOH . H 7 HOH A 33 333 42 HOH HOH . H 7 HOH A 34 334 5 HOH HOH . H 7 HOH A 35 335 87 HOH HOH . H 7 HOH A 36 336 69 HOH HOH . H 7 HOH A 37 337 6 HOH HOH . H 7 HOH A 38 338 55 HOH HOH . H 7 HOH A 39 339 117 HOH HOH . H 7 HOH A 40 340 58 HOH HOH . H 7 HOH A 41 341 85 HOH HOH . H 7 HOH A 42 342 12 HOH HOH . H 7 HOH A 43 343 54 HOH HOH . H 7 HOH A 44 344 37 HOH HOH . H 7 HOH A 45 345 7 HOH HOH . H 7 HOH A 46 346 56 HOH HOH . H 7 HOH A 47 347 114 HOH HOH . H 7 HOH A 48 348 16 HOH HOH . H 7 HOH A 49 349 27 HOH HOH . H 7 HOH A 50 350 92 HOH HOH . H 7 HOH A 51 351 76 HOH HOH . H 7 HOH A 52 352 107 HOH HOH . H 7 HOH A 53 353 38 HOH HOH . H 7 HOH A 54 354 67 HOH HOH . H 7 HOH A 55 355 9 HOH HOH . H 7 HOH A 56 356 10 HOH HOH . H 7 HOH A 57 357 15 HOH HOH . H 7 HOH A 58 358 53 HOH HOH . H 7 HOH A 59 359 31 HOH HOH . H 7 HOH A 60 360 35 HOH HOH . H 7 HOH A 61 361 46 HOH HOH . H 7 HOH A 62 362 28 HOH HOH . H 7 HOH A 63 363 108 HOH HOH . H 7 HOH A 64 364 14 HOH HOH . H 7 HOH A 65 365 3 HOH HOH . H 7 HOH A 66 366 61 HOH HOH . H 7 HOH A 67 367 50 HOH HOH . H 7 HOH A 68 368 18 HOH HOH . H 7 HOH A 69 369 103 HOH HOH . H 7 HOH A 70 370 79 HOH HOH . H 7 HOH A 71 371 65 HOH HOH . H 7 HOH A 72 372 80 HOH HOH . H 7 HOH A 73 373 32 HOH HOH . H 7 HOH A 74 374 29 HOH HOH . H 7 HOH A 75 375 63 HOH HOH . H 7 HOH A 76 376 49 HOH HOH . H 7 HOH A 77 377 84 HOH HOH . H 7 HOH A 78 378 112 HOH HOH . H 7 HOH A 79 379 2 HOH HOH . H 7 HOH A 80 380 47 HOH HOH . H 7 HOH A 81 381 21 HOH HOH . H 7 HOH A 82 382 70 HOH HOH . H 7 HOH A 83 383 90 HOH HOH . H 7 HOH A 84 384 30 HOH HOH . H 7 HOH A 85 385 72 HOH HOH . H 7 HOH A 86 386 96 HOH HOH . H 7 HOH A 87 387 100 HOH HOH . H 7 HOH A 88 388 24 HOH HOH . H 7 HOH A 89 389 111 HOH HOH . H 7 HOH A 90 390 104 HOH HOH . H 7 HOH A 91 391 78 HOH HOH . H 7 HOH A 92 392 102 HOH HOH . H 7 HOH A 93 393 86 HOH HOH . H 7 HOH A 94 394 74 HOH HOH . H 7 HOH A 95 395 101 HOH HOH . H 7 HOH A 96 396 40 HOH HOH . H 7 HOH A 97 397 81 HOH HOH . H 7 HOH A 98 398 45 HOH HOH . H 7 HOH A 99 399 113 HOH HOH . H 7 HOH A 100 400 95 HOH HOH . H 7 HOH A 101 401 60 HOH HOH . H 7 HOH A 102 402 110 HOH HOH . H 7 HOH A 103 403 89 HOH HOH . H 7 HOH A 104 404 97 HOH HOH . H 7 HOH A 105 405 64 HOH HOH . H 7 HOH A 106 406 118 HOH HOH . H 7 HOH A 107 407 82 HOH HOH . H 7 HOH A 108 408 93 HOH HOH . H 7 HOH A 109 409 52 HOH HOH . H 7 HOH A 110 410 91 HOH HOH . H 7 HOH A 111 411 116 HOH HOH . H 7 HOH A 112 412 115 HOH HOH . H 7 HOH A 113 413 59 HOH HOH . H 7 HOH A 114 414 83 HOH HOH . I 7 HOH B 1 301 121 HOH HOH . I 7 HOH B 2 302 66 HOH HOH . I 7 HOH B 3 303 120 HOH HOH . I 7 HOH B 4 304 119 HOH HOH . I 7 HOH B 5 305 105 HOH HOH . I 7 HOH B 6 306 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 5 -235.425 252.367 287.711 1 99.5 ? P AMP 201 B 1 HETATM 2 O O1P AMP . . . F 5 -236.694 251.662 287.542 1 97.75 ? O1P AMP 201 B 1 HETATM 3 O O2P AMP . . . F 5 -235.03 252.859 289.037 1 100.61 ? O2P AMP 201 B 1 HETATM 4 O O5' AMP . . . F 5 -234.314 251.358 287.184 1 100.69 ? O5' AMP 201 B 1 HETATM 5 C C5' AMP . . . F 5 -234.351 250.793 285.875 1 100.39 ? C5' AMP 201 B 1 HETATM 6 C C4' AMP . . . F 5 -233.001 250.23 285.478 1 103.01 ? C4' AMP 201 B 1 HETATM 7 O O4' AMP . . . F 5 -232.228 251.253 284.791 1 104.9 ? O4' AMP 201 B 1 HETATM 8 C C3' AMP . . . F 5 -232.095 249.766 286.629 1 106.08 ? C3' AMP 201 B 1 HETATM 9 O O3' AMP . . . F 5 -232.36 248.439 287.08 1 104.32 ? O3' AMP 201 B 1 HETATM 10 C C2' AMP . . . F 5 -230.691 249.94 286.06 1 107.96 ? C2' AMP 201 B 1 HETATM 11 O O2' AMP . . . F 5 -230.342 248.829 285.251 1 111.11 ? O2' AMP 201 B 1 HETATM 12 C C1' AMP . . . F 5 -230.862 251.17 285.163 1 107.75 ? C1' AMP 201 B 1 HETATM 13 N N9 AMP . . . F 5 -230.457 252.433 285.839 1 109.26 ? N9 AMP 201 B 1 HETATM 14 C C8 AMP . . . F 5 -231.282 253.36 286.431 1 105.67 ? C8 AMP 201 B 1 HETATM 15 N N7 AMP . . . F 5 -230.674 254.398 286.957 1 107.38 ? N7 AMP 201 B 1 HETATM 16 C C5 AMP . . . F 5 -229.334 254.156 286.702 1 123.51 ? C5 AMP 201 B 1 HETATM 17 C C6 AMP . . . F 5 -228.173 254.899 287.018 1 128.88 ? C6 AMP 201 B 1 HETATM 18 N N6 AMP . . . F 5 -228.209 256.065 287.675 1 112.37 ? N6 AMP 201 B 1 HETATM 19 N N1 AMP . . . F 5 -226.97 254.393 286.63 1 134.25 ? N1 AMP 201 B 1 HETATM 20 C C2 AMP . . . F 5 -226.962 253.219 285.97 1 125.7 ? C2 AMP 201 B 1 HETATM 21 N N3 AMP . . . F 5 -227.991 252.432 285.62 1 121.14 ? N3 AMP 201 B 1 HETATM 22 C C4 AMP . . . F 5 -229.176 252.953 286.016 1 116.81 ? C4 AMP 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #