data_7KL5 # _model_server_result.job_id YrzrqfvF9SkR3UXd6m2xKA _model_server_result.datetime_utc '2024-11-22 00:38:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":209}' # _entry.id 7KL5 # _exptl.entry_id 7KL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.494 _cell.angle_gamma 90 _cell.entry_id 7KL5 _cell.length_a 33.169 _cell.length_b 62.403 _cell.length_c 43.19 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 21 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A OD1 ASP 23 A ASP 23 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A OD1 ASP 25 A ASP 25 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 A O THR 27 A THR 27 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 A OE1 GLU 32 A GLU 32 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc6 A OE2 GLU 32 A GLU 32 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc7 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc8 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc9 A OD1 ASN 61 A ASN 61 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc10 A O THR 63 A THR 63 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc11 A OE1 GLU 68 A GLU 68 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc12 A OE2 GLU 68 A GLU 68 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc13 A O LYS 78 A LYS 78 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc14 A OD1 ASP 81 A ASP 81 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc15 A OE1 GLU 85 A GLU 85 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc16 A OE2 GLU 85 A GLU 85 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc17 A OD1 ASP 94 A ASP 94 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc18 A OD1 ASP 96 A ASP 96 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc19 A OD1 ASN 98 A ASN 98 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc20 A O TYR 100 A TYR 100 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc21 A OE1 GLU 105 A GLU 105 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc22 A OE2 GLU 105 A GLU 105 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc23 A OD1 ASP 130 A ASP 130 1_555 G CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc24 A OD1 ASP 132 A ASP 132 1_555 G CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc25 A OD1 ASP 134 A ASP 134 1_555 G CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc26 A O GLN 136 A GLN 136 1_555 G CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc27 A OE1 GLU 141 A GLU 141 1_555 G CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc28 A OE2 GLU 141 A GLU 141 1_555 G CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc29 C CA CA . A CA 201 1_555 L O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc30 D CA CA . A CA 202 1_555 L O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc31 E CA CA . A CA 203 1_555 L O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc32 E CA CA . A CA 203 1_555 L O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc33 E CA CA . A CA 203 1_555 L O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc34 F CA CA . A CA 204 1_555 L O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc35 G CA CA . A CA 205 1_555 L O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 7KL5 _atom_sites.fract_transf_matrix[1][1] 0.030149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009502 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 201 1 CA CA . D 3 CA A 1 202 2 CA CA . E 3 CA A 1 203 3 CA CA . F 3 CA A 1 204 4 CA CA . G 3 CA A 1 205 5 CA CA . H 4 EDO A 1 206 201 EDO EDO . I 4 EDO A 1 207 401 EDO EDO . J 4 EDO A 1 208 501 EDO EDO . K 4 EDO A 1 209 601 EDO EDO . L 5 HOH A 1 301 19 HOH HOH . L 5 HOH A 2 302 66 HOH HOH . L 5 HOH A 3 303 16 HOH HOH . L 5 HOH A 4 304 63 HOH HOH . L 5 HOH A 5 305 3 HOH HOH . L 5 HOH A 6 306 18 HOH HOH . L 5 HOH A 7 307 71 HOH HOH . L 5 HOH A 8 308 41 HOH HOH . L 5 HOH A 9 309 68 HOH HOH . L 5 HOH A 10 310 60 HOH HOH . L 5 HOH A 11 311 28 HOH HOH . L 5 HOH A 12 312 64 HOH HOH . L 5 HOH A 13 313 43 HOH HOH . L 5 HOH A 14 314 27 HOH HOH . L 5 HOH A 15 315 33 HOH HOH . L 5 HOH A 16 316 45 HOH HOH . L 5 HOH A 17 317 2 HOH HOH . L 5 HOH A 18 318 9 HOH HOH . L 5 HOH A 19 319 31 HOH HOH . L 5 HOH A 20 320 10 HOH HOH . L 5 HOH A 21 321 1 HOH HOH . L 5 HOH A 22 322 7 HOH HOH . L 5 HOH A 23 323 15 HOH HOH . L 5 HOH A 24 324 8 HOH HOH . L 5 HOH A 25 325 29 HOH HOH . L 5 HOH A 26 326 12 HOH HOH . L 5 HOH A 27 327 34 HOH HOH . L 5 HOH A 28 328 36 HOH HOH . L 5 HOH A 29 329 14 HOH HOH . L 5 HOH A 30 330 5 HOH HOH . L 5 HOH A 31 331 26 HOH HOH . L 5 HOH A 32 332 52 HOH HOH . L 5 HOH A 33 333 42 HOH HOH . L 5 HOH A 34 334 69 HOH HOH . L 5 HOH A 35 335 44 HOH HOH . L 5 HOH A 36 336 20 HOH HOH . L 5 HOH A 37 337 72 HOH HOH . L 5 HOH A 38 338 23 HOH HOH . L 5 HOH A 39 339 54 HOH HOH . L 5 HOH A 40 340 47 HOH HOH . L 5 HOH A 41 341 21 HOH HOH . L 5 HOH A 42 342 49 HOH HOH . L 5 HOH A 43 343 24 HOH HOH . L 5 HOH A 44 344 51 HOH HOH . L 5 HOH A 45 345 65 HOH HOH . L 5 HOH A 46 346 13 HOH HOH . L 5 HOH A 47 347 38 HOH HOH . L 5 HOH A 48 348 6 HOH HOH . L 5 HOH A 49 349 55 HOH HOH . L 5 HOH A 50 350 17 HOH HOH . L 5 HOH A 51 351 56 HOH HOH . L 5 HOH A 52 352 22 HOH HOH . L 5 HOH A 53 353 40 HOH HOH . L 5 HOH A 54 354 48 HOH HOH . L 5 HOH A 55 355 53 HOH HOH . L 5 HOH A 56 356 4 HOH HOH . L 5 HOH A 57 357 30 HOH HOH . L 5 HOH A 58 358 11 HOH HOH . L 5 HOH A 59 359 59 HOH HOH . L 5 HOH A 60 360 61 HOH HOH . L 5 HOH A 61 361 35 HOH HOH . L 5 HOH A 62 362 39 HOH HOH . L 5 HOH A 63 363 70 HOH HOH . L 5 HOH A 64 364 46 HOH HOH . L 5 HOH A 65 365 37 HOH HOH . L 5 HOH A 66 366 73 HOH HOH . M 5 HOH B 1 101 50 HOH HOH . M 5 HOH B 2 102 25 HOH HOH . M 5 HOH B 3 103 67 HOH HOH . M 5 HOH B 4 104 32 HOH HOH . M 5 HOH B 5 105 58 HOH HOH . M 5 HOH B 6 106 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 4 -18.004 6.481 25.776 1 76.89 0 C1 EDO 209 A 1 HETATM 2 O O1 EDO . . . K 4 -18.173 6.426 24.369 1 77.72 0 O1 EDO 209 A 1 HETATM 3 C C2 EDO . . . K 4 -19.141 5.887 26.513 1 71.79 0 C2 EDO 209 A 1 HETATM 4 O O2 EDO . . . K 4 -20.331 5.921 25.753 1 64.72 0 O2 EDO 209 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #