data_7KM7
#
_model_server_result.job_id            DkxixlniAKNt2gZ46nKRgQ 
_model_server_result.datetime_utc      '2025-08-31 07:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7km7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    7KM7 
#
_exptl.entry_id    7KM7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              410.415 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KM7 
_cell.length_a            59.13 
_cell.length_b            59.13 
_cell.length_c            129.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KM7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    'P 4w 2c' 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H24 F2 N4 O4' 
_chem_comp.formula_weight    410.415 
_chem_comp.id                WPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O27 C26 WPD doub 456 n n 
O28 C26 WPD sing 457 n n 
C26 C22 WPD sing 458 n n 
C22 C21 WPD sing 459 n n 
C22 C23 WPD sing 460 n n 
C21 C20 WPD sing 461 n n 
F25 C23 WPD sing 462 n n 
C23 F24 WPD sing 463 n n 
C29 C20 WPD doub 464 n y 
C29 C16 WPD sing 465 n y 
C20 C19 WPD sing 466 n y 
C12 C13 WPD sing 467 n n 
C12 O11 WPD sing 468 n n 
O15 C16 WPD sing 469 n n 
O15 C14 WPD sing 470 n n 
C13 C14 WPD sing 471 n n 
N09 C08 WPD sing 472 n n 
C16 C17 WPD doub 473 n y 
C19 C18 WPD doub 474 n y 
C08 N07 WPD doub 475 n y 
C08 C10 WPD sing 476 n y 
O11 C10 WPD sing 477 n n 
N07 C05 WPD sing 478 n y 
C17 C18 WPD sing 479 n y 
C10 C03 WPD doub 480 n y 
C05 N06 WPD sing 481 n n 
C05 N04 WPD doub 482 n y 
C01 C02 WPD sing 483 n n 
C03 N04 WPD sing 484 n y 
C03 C02 WPD sing 485 n n 
C01 H1 WPD sing 486 n n 
C01 H2 WPD sing 487 n n 
C01 H3 WPD sing 488 n n 
C02 H4 WPD sing 489 n n 
C02 H5 WPD sing 490 n n 
C12 H6 WPD sing 491 n n 
C12 H7 WPD sing 492 n n 
C13 H8 WPD sing 493 n n 
C13 H9 WPD sing 494 n n 
C14 H10 WPD sing 495 n n 
C14 H11 WPD sing 496 n n 
C17 H12 WPD sing 497 n n 
C18 H13 WPD sing 498 n n 
C19 H14 WPD sing 499 n n 
C21 H15 WPD sing 500 n n 
C21 H16 WPD sing 501 n n 
C22 H17 WPD sing 502 n n 
C23 H18 WPD sing 503 n n 
C29 H19 WPD sing 504 n n 
N06 H20 WPD sing 505 n n 
N06 H21 WPD sing 506 n n 
N09 H22 WPD sing 507 n n 
N09 H23 WPD sing 508 n n 
O28 H24 WPD sing 509 n n 
#
_atom_sites.entry_id                     7KM7 
_atom_sites.fract_transf_matrix[1][1]    0.016912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007723 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 201 200 NAP NAP . 
C 3 WPD A 1 202 201 WPD 914 . 
D 4 BR A 1 203 205 BR BR . 
E 4 BR A 1 204 206 BR BR . 
F 5 HOH A 1 301 96 HOH HOH . 
F 5 HOH A 2 302 141 HOH HOH . 
F 5 HOH A 3 303 73 HOH HOH . 
F 5 HOH A 4 304 68 HOH HOH . 
F 5 HOH A 5 305 176 HOH HOH . 
F 5 HOH A 6 306 121 HOH HOH . 
F 5 HOH A 7 307 49 HOH HOH . 
F 5 HOH A 8 308 130 HOH HOH . 
F 5 HOH A 9 309 10 HOH HOH . 
F 5 HOH A 10 310 46 HOH HOH . 
F 5 HOH A 11 311 174 HOH HOH . 
F 5 HOH A 12 312 13 HOH HOH . 
F 5 HOH A 13 313 56 HOH HOH . 
F 5 HOH A 14 314 70 HOH HOH . 
F 5 HOH A 15 315 28 HOH HOH . 
F 5 HOH A 16 316 132 HOH HOH . 
F 5 HOH A 17 317 55 HOH HOH . 
F 5 HOH A 18 318 31 HOH HOH . 
F 5 HOH A 19 319 41 HOH HOH . 
F 5 HOH A 20 320 5 HOH HOH . 
F 5 HOH A 21 321 58 HOH HOH . 
F 5 HOH A 22 322 11 HOH HOH . 
F 5 HOH A 23 323 25 HOH HOH . 
F 5 HOH A 24 324 4 HOH HOH . 
F 5 HOH A 25 325 45 HOH HOH . 
F 5 HOH A 26 326 8 HOH HOH . 
F 5 HOH A 27 327 158 HOH HOH . 
F 5 HOH A 28 328 112 HOH HOH . 
F 5 HOH A 29 329 135 HOH HOH . 
F 5 HOH A 30 330 57 HOH HOH . 
F 5 HOH A 31 331 95 HOH HOH . 
F 5 HOH A 32 332 12 HOH HOH . 
F 5 HOH A 33 333 161 HOH HOH . 
F 5 HOH A 34 334 30 HOH HOH . 
F 5 HOH A 35 335 125 HOH HOH . 
F 5 HOH A 36 336 84 HOH HOH . 
F 5 HOH A 37 337 60 HOH HOH . 
F 5 HOH A 38 338 108 HOH HOH . 
F 5 HOH A 39 339 47 HOH HOH . 
F 5 HOH A 40 340 62 HOH HOH . 
F 5 HOH A 41 341 33 HOH HOH . 
F 5 HOH A 42 342 63 HOH HOH . 
F 5 HOH A 43 343 98 HOH HOH . 
F 5 HOH A 44 344 9 HOH HOH . 
F 5 HOH A 45 345 19 HOH HOH . 
F 5 HOH A 46 346 26 HOH HOH . 
F 5 HOH A 47 347 101 HOH HOH . 
F 5 HOH A 48 348 152 HOH HOH . 
F 5 HOH A 49 349 115 HOH HOH . 
F 5 HOH A 50 350 90 HOH HOH . 
F 5 HOH A 51 351 36 HOH HOH . 
F 5 HOH A 52 352 50 HOH HOH . 
F 5 HOH A 53 353 39 HOH HOH . 
F 5 HOH A 54 354 52 HOH HOH . 
F 5 HOH A 55 355 76 HOH HOH . 
F 5 HOH A 56 356 38 HOH HOH . 
F 5 HOH A 57 357 149 HOH HOH . 
F 5 HOH A 58 358 34 HOH HOH . 
F 5 HOH A 59 359 15 HOH HOH . 
F 5 HOH A 60 360 65 HOH HOH . 
F 5 HOH A 61 361 29 HOH HOH . 
F 5 HOH A 62 362 69 HOH HOH . 
F 5 HOH A 63 363 171 HOH HOH . 
F 5 HOH A 64 364 99 HOH HOH . 
F 5 HOH A 65 365 144 HOH HOH . 
F 5 HOH A 66 366 16 HOH HOH . 
F 5 HOH A 67 367 175 HOH HOH . 
F 5 HOH A 68 368 100 HOH HOH . 
F 5 HOH A 69 369 21 HOH HOH . 
F 5 HOH A 70 370 92 HOH HOH . 
F 5 HOH A 71 371 44 HOH HOH . 
F 5 HOH A 72 372 71 HOH HOH . 
F 5 HOH A 73 373 23 HOH HOH . 
F 5 HOH A 74 374 109 HOH HOH . 
F 5 HOH A 75 375 6 HOH HOH . 
F 5 HOH A 76 376 94 HOH HOH . 
F 5 HOH A 77 377 146 HOH HOH . 
F 5 HOH A 78 378 42 HOH HOH . 
F 5 HOH A 79 379 127 HOH HOH . 
F 5 HOH A 80 380 24 HOH HOH . 
F 5 HOH A 81 381 82 HOH HOH . 
F 5 HOH A 82 382 106 HOH HOH . 
F 5 HOH A 83 383 137 HOH HOH . 
F 5 HOH A 84 384 22 HOH HOH . 
F 5 HOH A 85 385 81 HOH HOH . 
F 5 HOH A 86 386 40 HOH HOH . 
F 5 HOH A 87 387 168 HOH HOH . 
F 5 HOH A 88 388 123 HOH HOH . 
F 5 HOH A 89 389 74 HOH HOH . 
F 5 HOH A 90 390 151 HOH HOH . 
F 5 HOH A 91 391 159 HOH HOH . 
F 5 HOH A 92 392 119 HOH HOH . 
F 5 HOH A 93 393 32 HOH HOH . 
F 5 HOH A 94 394 18 HOH HOH . 
F 5 HOH A 95 395 128 HOH HOH . 
F 5 HOH A 96 396 78 HOH HOH . 
F 5 HOH A 97 397 35 HOH HOH . 
F 5 HOH A 98 398 59 HOH HOH . 
F 5 HOH A 99 399 160 HOH HOH . 
F 5 HOH A 100 400 17 HOH HOH . 
F 5 HOH A 101 401 122 HOH HOH . 
F 5 HOH A 102 402 114 HOH HOH . 
F 5 HOH A 103 403 165 HOH HOH . 
F 5 HOH A 104 404 102 HOH HOH . 
F 5 HOH A 105 405 89 HOH HOH . 
F 5 HOH A 106 406 140 HOH HOH . 
F 5 HOH A 107 407 164 HOH HOH . 
F 5 HOH A 108 408 48 HOH HOH . 
F 5 HOH A 109 409 131 HOH HOH . 
F 5 HOH A 110 410 54 HOH HOH . 
F 5 HOH A 111 411 37 HOH HOH . 
F 5 HOH A 112 412 86 HOH HOH . 
F 5 HOH A 113 413 103 HOH HOH . 
F 5 HOH A 114 414 138 HOH HOH . 
F 5 HOH A 115 415 116 HOH HOH . 
F 5 HOH A 116 416 169 HOH HOH . 
F 5 HOH A 117 417 139 HOH HOH . 
F 5 HOH A 118 418 134 HOH HOH . 
F 5 HOH A 119 419 147 HOH HOH . 
F 5 HOH A 120 420 170 HOH HOH . 
F 5 HOH A 121 421 72 HOH HOH . 
F 5 HOH A 122 422 157 HOH HOH . 
F 5 HOH A 123 423 163 HOH HOH . 
F 5 HOH A 124 424 153 HOH HOH . 
F 5 HOH A 125 425 87 HOH HOH . 
F 5 HOH A 126 426 173 HOH HOH . 
F 5 HOH A 127 427 61 HOH HOH . 
F 5 HOH A 128 428 111 HOH HOH . 
F 5 HOH A 129 429 77 HOH HOH . 
F 5 HOH A 130 430 43 HOH HOH . 
F 5 HOH A 131 431 126 HOH HOH . 
F 5 HOH A 132 432 113 HOH HOH . 
F 5 HOH A 133 433 142 HOH HOH . 
F 5 HOH A 134 434 148 HOH HOH . 
F 5 HOH A 135 435 143 HOH HOH . 
F 5 HOH A 136 436 150 HOH HOH . 
F 5 HOH A 137 437 145 HOH HOH . 
F 5 HOH A 138 438 156 HOH HOH . 
F 5 HOH A 139 439 124 HOH HOH . 
F 5 HOH A 140 440 133 HOH HOH . 
F 5 HOH A 141 441 162 HOH HOH . 
F 5 HOH A 142 442 110 HOH HOH . 
F 5 HOH A 143 443 67 HOH HOH . 
F 5 HOH A 144 444 97 HOH HOH . 
F 5 HOH A 145 445 117 HOH HOH . 
F 5 HOH A 146 446 172 HOH HOH . 
F 5 HOH A 147 447 53 HOH HOH . 
F 5 HOH A 148 448 93 HOH HOH . 
F 5 HOH A 149 449 154 HOH HOH . 
F 5 HOH A 150 450 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 WPD . . . C 3 -20.437 18.521 -5.626 1 19.5 ? C10 WPD 202 A 1 
HETATM 2 O O11 WPD . . . C 3 -21.083 17.314 -5.906 1 22.1 ? O11 WPD 202 A 1 
HETATM 3 C C01 WPD . . . C 3 -23.31 20.015 -5.025 1 25.76 ? C01 WPD 202 A 1 
HETATM 4 C C02 WPD . . . C 3 -22.277 19.292 -4.124 1 22.57 ? C02 WPD 202 A 1 
HETATM 5 C C03 WPD . . . C 3 -20.942 19.459 -4.782 1 21.08 ? C03 WPD 202 A 1 
HETATM 6 C C05 WPD . . . C 3 -19.092 20.79 -5.055 1 21.1 ? C05 WPD 202 A 1 
HETATM 7 C C08 WPD . . . C 3 -19.154 18.788 -6.18 1 22.19 ? C08 WPD 202 A 1 
HETATM 8 C C12 WPD . . . C 3 -21.724 17.176 -7.228 1 22.34 ? C12 WPD 202 A 1 
HETATM 9 C C13 WPD . . . C 3 -22.635 15.962 -7.131 1 23.4 ? C13 WPD 202 A 1 
HETATM 10 C C14 WPD . . . C 3 -23.912 16.335 -6.389 1 22.48 ? C14 WPD 202 A 1 
HETATM 11 C C16 WPD . . . C 3 -25.739 17.915 -6.829 1 24.48 ? C16 WPD 202 A 1 
HETATM 12 C C17 WPD . . . C 3 -26.425 17.575 -5.685 1 21.35 ? C17 WPD 202 A 1 
HETATM 13 C C18 WPD . . . C 3 -27.661 18.171 -5.425 1 25.87 ? C18 WPD 202 A 1 
HETATM 14 C C19 WPD . . . C 3 -28.212 19.108 -6.274 1 24.81 ? C19 WPD 202 A 1 
HETATM 15 C C20 WPD . . . C 3 -27.509 19.466 -7.439 1 26.98 ? C20 WPD 202 A 1 
HETATM 16 C C21 WPD . . . C 3 -28.071 20.49 -8.425 1 26.05 ? C21 WPD 202 A 1 
HETATM 17 C C22 WPD . . . C 3 -27.282 21.817 -8.463 1 24.78 ? C22 WPD 202 A 1 
HETATM 18 C C23 WPD . . . C 3 -28.197 22.898 -7.964 1 35.09 ? C23 WPD 202 A 1 
HETATM 19 C C26 WPD . . . C 3 -26.835 22.188 -9.919 1 29.27 ? C26 WPD 202 A 1 
HETATM 20 C C29 WPD . . . C 3 -26.271 18.871 -7.699 1 23.85 ? C29 WPD 202 A 1 
HETATM 21 F F24 WPD . . . C 3 -28.668 22.662 -6.674 1 39.8 ? F24 WPD 202 A 1 
HETATM 22 F F25 WPD . . . C 3 -27.521 24.096 -7.966 1 34.01 ? F25 WPD 202 A 1 
HETATM 23 N N04 WPD . . . C 3 -20.286 20.6 -4.489 1 20.07 ? N04 WPD 202 A 1 
HETATM 24 N N06 WPD . . . C 3 -18.446 21.941 -4.77 1 19.25 ? N06 WPD 202 A 1 
HETATM 25 N N07 WPD . . . C 3 -18.512 19.924 -5.902 1 22.71 ? N07 WPD 202 A 1 
HETATM 26 N N09 WPD . . . C 3 -18.583 17.89 -7.014 1 23.55 ? N09 WPD 202 A 1 
HETATM 27 O O15 WPD . . . C 3 -24.505 17.379 -7.165 1 23.85 ? O15 WPD 202 A 1 
HETATM 28 O O27 WPD . . . C 3 -27.791 22.418 -10.703 1 28.52 ? O27 WPD 202 A 1 
HETATM 29 O O28 WPD . . . C 3 -25.601 22.229 -10.104 1 27.7 ? O28 WPD 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           29 
#