data_7KM9 # _model_server_result.job_id ZhKqiNJnY-0Q5OQ3BLy-bw _model_server_result.datetime_utc '2024-11-22 09:02:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7km9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7KM9 # _exptl.entry_id 7KM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KM9 _cell.length_a 58.97 _cell.length_b 58.97 _cell.length_c 130.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 7KM9 _atom_sites.fract_transf_matrix[1][1] 0.016958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 200 NAP NAP . C 3 WPJ A 1 202 201 WPJ 913 . D 4 BR A 1 203 205 BR BR . E 4 BR A 1 204 206 BR BR . F 5 CL A 1 205 1 CL CL . G 6 HOH A 1 301 138 HOH HOH . G 6 HOH A 2 302 104 HOH HOH . G 6 HOH A 3 303 16 HOH HOH . G 6 HOH A 4 304 59 HOH HOH . G 6 HOH A 5 305 14 HOH HOH . G 6 HOH A 6 306 29 HOH HOH . G 6 HOH A 7 307 69 HOH HOH . G 6 HOH A 8 308 51 HOH HOH . G 6 HOH A 9 309 86 HOH HOH . G 6 HOH A 10 310 57 HOH HOH . G 6 HOH A 11 311 102 HOH HOH . G 6 HOH A 12 312 7 HOH HOH . G 6 HOH A 13 313 98 HOH HOH . G 6 HOH A 14 314 92 HOH HOH . G 6 HOH A 15 315 39 HOH HOH . G 6 HOH A 16 316 33 HOH HOH . G 6 HOH A 17 317 17 HOH HOH . G 6 HOH A 18 318 31 HOH HOH . G 6 HOH A 19 319 142 HOH HOH . G 6 HOH A 20 320 81 HOH HOH . G 6 HOH A 21 321 2 HOH HOH . G 6 HOH A 22 322 85 HOH HOH . G 6 HOH A 23 323 131 HOH HOH . G 6 HOH A 24 324 105 HOH HOH . G 6 HOH A 25 325 28 HOH HOH . G 6 HOH A 26 326 44 HOH HOH . G 6 HOH A 27 327 137 HOH HOH . G 6 HOH A 28 328 19 HOH HOH . G 6 HOH A 29 329 35 HOH HOH . G 6 HOH A 30 330 5 HOH HOH . G 6 HOH A 31 331 112 HOH HOH . G 6 HOH A 32 332 30 HOH HOH . G 6 HOH A 33 333 76 HOH HOH . G 6 HOH A 34 334 8 HOH HOH . G 6 HOH A 35 335 50 HOH HOH . G 6 HOH A 36 336 12 HOH HOH . G 6 HOH A 37 337 43 HOH HOH . G 6 HOH A 38 338 22 HOH HOH . G 6 HOH A 39 339 73 HOH HOH . G 6 HOH A 40 340 118 HOH HOH . G 6 HOH A 41 341 55 HOH HOH . G 6 HOH A 42 342 25 HOH HOH . G 6 HOH A 43 343 23 HOH HOH . G 6 HOH A 44 344 34 HOH HOH . G 6 HOH A 45 345 15 HOH HOH . G 6 HOH A 46 346 127 HOH HOH . G 6 HOH A 47 347 45 HOH HOH . G 6 HOH A 48 348 36 HOH HOH . G 6 HOH A 49 349 32 HOH HOH . G 6 HOH A 50 350 4 HOH HOH . G 6 HOH A 51 351 37 HOH HOH . G 6 HOH A 52 352 128 HOH HOH . G 6 HOH A 53 353 18 HOH HOH . G 6 HOH A 54 354 100 HOH HOH . G 6 HOH A 55 355 120 HOH HOH . G 6 HOH A 56 356 11 HOH HOH . G 6 HOH A 57 357 110 HOH HOH . G 6 HOH A 58 358 101 HOH HOH . G 6 HOH A 59 359 78 HOH HOH . G 6 HOH A 60 360 139 HOH HOH . G 6 HOH A 61 361 41 HOH HOH . G 6 HOH A 62 362 26 HOH HOH . G 6 HOH A 63 363 95 HOH HOH . G 6 HOH A 64 364 87 HOH HOH . G 6 HOH A 65 365 126 HOH HOH . G 6 HOH A 66 366 115 HOH HOH . G 6 HOH A 67 367 40 HOH HOH . G 6 HOH A 68 368 114 HOH HOH . G 6 HOH A 69 369 113 HOH HOH . G 6 HOH A 70 370 20 HOH HOH . G 6 HOH A 71 371 125 HOH HOH . G 6 HOH A 72 372 99 HOH HOH . G 6 HOH A 73 373 130 HOH HOH . G 6 HOH A 74 374 54 HOH HOH . G 6 HOH A 75 375 58 HOH HOH . G 6 HOH A 76 376 3 HOH HOH . G 6 HOH A 77 377 9 HOH HOH . G 6 HOH A 78 378 123 HOH HOH . G 6 HOH A 79 379 83 HOH HOH . G 6 HOH A 80 380 46 HOH HOH . G 6 HOH A 81 381 72 HOH HOH . G 6 HOH A 82 382 108 HOH HOH . G 6 HOH A 83 383 109 HOH HOH . G 6 HOH A 84 384 122 HOH HOH . G 6 HOH A 85 385 24 HOH HOH . G 6 HOH A 86 386 10 HOH HOH . G 6 HOH A 87 387 135 HOH HOH . G 6 HOH A 88 388 129 HOH HOH . G 6 HOH A 89 389 84 HOH HOH . G 6 HOH A 90 390 116 HOH HOH . G 6 HOH A 91 391 47 HOH HOH . G 6 HOH A 92 392 66 HOH HOH . G 6 HOH A 93 393 107 HOH HOH . G 6 HOH A 94 394 71 HOH HOH . G 6 HOH A 95 395 97 HOH HOH . G 6 HOH A 96 396 21 HOH HOH . G 6 HOH A 97 397 132 HOH HOH . G 6 HOH A 98 398 53 HOH HOH . G 6 HOH A 99 399 124 HOH HOH . G 6 HOH A 100 400 121 HOH HOH . G 6 HOH A 101 401 52 HOH HOH . G 6 HOH A 102 402 136 HOH HOH . G 6 HOH A 103 403 49 HOH HOH . G 6 HOH A 104 404 82 HOH HOH . G 6 HOH A 105 405 119 HOH HOH . G 6 HOH A 106 406 94 HOH HOH . G 6 HOH A 107 407 27 HOH HOH . G 6 HOH A 108 408 74 HOH HOH . G 6 HOH A 109 409 111 HOH HOH . G 6 HOH A 110 410 68 HOH HOH . G 6 HOH A 111 411 80 HOH HOH . G 6 HOH A 112 412 133 HOH HOH . G 6 HOH A 113 413 103 HOH HOH . G 6 HOH A 114 414 141 HOH HOH . G 6 HOH A 115 415 48 HOH HOH . G 6 HOH A 116 416 117 HOH HOH . G 6 HOH A 117 417 75 HOH HOH . G 6 HOH A 118 418 56 HOH HOH . G 6 HOH A 119 419 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -17.985 7.371 -7.794 1 37.14 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 -16.571 7.762 -8.033 1 37.33 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 -18.941 8.575 -8.014 1 32.93 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 -18.479 6.163 -8.761 1 40.02 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 -17.919 4.843 -8.636 1 42.74 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 -18.254 4.076 -9.892 1 42.95 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 -17.526 4.61 -11.018 1 39.16 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 -17.896 2.598 -9.862 1 42.69 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 -18.829 1.875 -9.067 1 46.47 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 -17.943 2.319 -11.362 1 46.44 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 -19.28 2.248 -11.891 1 50.8 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 -17.288 3.566 -11.949 1 45.79 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 -15.851 3.423 -12.165 1 44.53 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 -14.853 3.517 -11.232 1 43.26 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 -13.645 3.353 -11.716 1 45.84 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 -13.866 3.129 -13.068 1 48.66 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 -12.989 2.866 -14.14 1 50.43 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 -11.661 2.8 -14.021 1 51.37 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 -13.534 2.674 -15.362 1 48.93 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 -14.863 2.748 -15.492 1 52.76 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 -15.786 2.989 -14.557 1 49.28 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 -15.218 3.17 -13.359 1 48.84 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 -18.221 6.7 -6.374 1 34.79 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 -17.845 7.019 -4.856 1 38.89 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 -16.373 7.138 -4.779 1 41.94 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 -18.552 6.046 -3.995 1 37.77 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 -18.464 8.479 -4.698 1 41.88 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 -19.88 8.646 -4.444 1 33.68 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 -20.08 9.319 -3.108 1 32.97 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 -19.447 10.624 -3.118 1 33.63 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 -21.54 9.582 -2.746 1 33.25 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 -21.698 9.608 -1.332 1 32.4 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 -21.753 10.98 -3.314 1 35.1 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -22.871 11.621 -2.71 1 30.26 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 -20.423 11.613 -2.912 1 30.31 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -20.026 12.858 -3.718 1 32.17 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -19.647 13.939 -3.017 1 28.74 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -19.134 15.043 -3.67 1 26.98 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -18.728 16.272 -2.911 1 27.87 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -18.183 17.191 -3.511 1 28.78 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -18.961 16.307 -1.588 1 24.14 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -19.033 15.007 -5.064 1 27.73 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -19.452 13.887 -5.757 1 24.7 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 -19.96 12.818 -5.066 1 31.56 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 -20.11 0.887 -11.981 1 49.49 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 -21.427 1.209 -12.617 1 52.42 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 -19.269 -0.074 -12.83 1 50.27 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 -20.233 0.382 -10.589 1 42.36 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #