data_7KM9 # _model_server_result.job_id ELZL70tRlE5_ur5Bid6yqg _model_server_result.datetime_utc '2024-11-22 09:06:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7km9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7KM9 # _exptl.entry_id 7KM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KM9 _cell.length_a 58.97 _cell.length_b 58.97 _cell.length_c 130.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 F2 N4 O4' _chem_comp.formula_weight 410.415 _chem_comp.id WPJ _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 C26 WPJ doub 456 n n C26 O28 WPJ sing 457 n n C26 C22 WPJ sing 458 n n C22 C23 WPJ sing 459 n n C22 C21 WPJ sing 460 n n C23 F25 WPJ sing 461 n n C23 F24 WPJ sing 462 n n C21 C20 WPJ sing 463 n n C29 C20 WPJ doub 464 n y C29 C16 WPJ sing 465 n y O15 C16 WPJ sing 466 n n O15 C14 WPJ sing 467 n n C12 C13 WPJ sing 468 n n C12 O11 WPJ sing 469 n n C20 C19 WPJ sing 470 n y C13 C14 WPJ sing 471 n n C16 C17 WPJ doub 472 n y N09 C08 WPJ sing 473 n n C19 C18 WPJ doub 474 n y C17 C18 WPJ sing 475 n y C08 N07 WPJ doub 476 n y C08 C10 WPJ sing 477 n y O11 C10 WPJ sing 478 n n N07 C05 WPJ sing 479 n y C10 C03 WPJ doub 480 n y C01 C02 WPJ sing 481 n n C05 N06 WPJ sing 482 n n C05 N04 WPJ doub 483 n y C03 N04 WPJ sing 484 n y C03 C02 WPJ sing 485 n n C01 H1 WPJ sing 486 n n C01 H2 WPJ sing 487 n n C01 H3 WPJ sing 488 n n C02 H4 WPJ sing 489 n n C02 H5 WPJ sing 490 n n C12 H6 WPJ sing 491 n n C12 H7 WPJ sing 492 n n C13 H8 WPJ sing 493 n n C13 H9 WPJ sing 494 n n C14 H10 WPJ sing 495 n n C14 H11 WPJ sing 496 n n C17 H12 WPJ sing 497 n n C18 H13 WPJ sing 498 n n C19 H14 WPJ sing 499 n n C21 H15 WPJ sing 500 n n C21 H16 WPJ sing 501 n n C22 H17 WPJ sing 502 n n C23 H18 WPJ sing 503 n n C29 H19 WPJ sing 504 n n N06 H20 WPJ sing 505 n n N06 H21 WPJ sing 506 n n N09 H22 WPJ sing 507 n n N09 H23 WPJ sing 508 n n O28 H24 WPJ sing 509 n n # _atom_sites.entry_id 7KM9 _atom_sites.fract_transf_matrix[1][1] 0.016958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 200 NAP NAP . C 3 WPJ A 1 202 201 WPJ 913 . D 4 BR A 1 203 205 BR BR . E 4 BR A 1 204 206 BR BR . F 5 CL A 1 205 1 CL CL . G 6 HOH A 1 301 138 HOH HOH . G 6 HOH A 2 302 104 HOH HOH . G 6 HOH A 3 303 16 HOH HOH . G 6 HOH A 4 304 59 HOH HOH . G 6 HOH A 5 305 14 HOH HOH . G 6 HOH A 6 306 29 HOH HOH . G 6 HOH A 7 307 69 HOH HOH . G 6 HOH A 8 308 51 HOH HOH . G 6 HOH A 9 309 86 HOH HOH . G 6 HOH A 10 310 57 HOH HOH . G 6 HOH A 11 311 102 HOH HOH . G 6 HOH A 12 312 7 HOH HOH . G 6 HOH A 13 313 98 HOH HOH . G 6 HOH A 14 314 92 HOH HOH . G 6 HOH A 15 315 39 HOH HOH . G 6 HOH A 16 316 33 HOH HOH . G 6 HOH A 17 317 17 HOH HOH . G 6 HOH A 18 318 31 HOH HOH . G 6 HOH A 19 319 142 HOH HOH . G 6 HOH A 20 320 81 HOH HOH . G 6 HOH A 21 321 2 HOH HOH . G 6 HOH A 22 322 85 HOH HOH . G 6 HOH A 23 323 131 HOH HOH . G 6 HOH A 24 324 105 HOH HOH . G 6 HOH A 25 325 28 HOH HOH . G 6 HOH A 26 326 44 HOH HOH . G 6 HOH A 27 327 137 HOH HOH . G 6 HOH A 28 328 19 HOH HOH . G 6 HOH A 29 329 35 HOH HOH . G 6 HOH A 30 330 5 HOH HOH . G 6 HOH A 31 331 112 HOH HOH . G 6 HOH A 32 332 30 HOH HOH . G 6 HOH A 33 333 76 HOH HOH . G 6 HOH A 34 334 8 HOH HOH . G 6 HOH A 35 335 50 HOH HOH . G 6 HOH A 36 336 12 HOH HOH . G 6 HOH A 37 337 43 HOH HOH . G 6 HOH A 38 338 22 HOH HOH . G 6 HOH A 39 339 73 HOH HOH . G 6 HOH A 40 340 118 HOH HOH . G 6 HOH A 41 341 55 HOH HOH . G 6 HOH A 42 342 25 HOH HOH . G 6 HOH A 43 343 23 HOH HOH . G 6 HOH A 44 344 34 HOH HOH . G 6 HOH A 45 345 15 HOH HOH . G 6 HOH A 46 346 127 HOH HOH . G 6 HOH A 47 347 45 HOH HOH . G 6 HOH A 48 348 36 HOH HOH . G 6 HOH A 49 349 32 HOH HOH . G 6 HOH A 50 350 4 HOH HOH . G 6 HOH A 51 351 37 HOH HOH . G 6 HOH A 52 352 128 HOH HOH . G 6 HOH A 53 353 18 HOH HOH . G 6 HOH A 54 354 100 HOH HOH . G 6 HOH A 55 355 120 HOH HOH . G 6 HOH A 56 356 11 HOH HOH . G 6 HOH A 57 357 110 HOH HOH . G 6 HOH A 58 358 101 HOH HOH . G 6 HOH A 59 359 78 HOH HOH . G 6 HOH A 60 360 139 HOH HOH . G 6 HOH A 61 361 41 HOH HOH . G 6 HOH A 62 362 26 HOH HOH . G 6 HOH A 63 363 95 HOH HOH . G 6 HOH A 64 364 87 HOH HOH . G 6 HOH A 65 365 126 HOH HOH . G 6 HOH A 66 366 115 HOH HOH . G 6 HOH A 67 367 40 HOH HOH . G 6 HOH A 68 368 114 HOH HOH . G 6 HOH A 69 369 113 HOH HOH . G 6 HOH A 70 370 20 HOH HOH . G 6 HOH A 71 371 125 HOH HOH . G 6 HOH A 72 372 99 HOH HOH . G 6 HOH A 73 373 130 HOH HOH . G 6 HOH A 74 374 54 HOH HOH . G 6 HOH A 75 375 58 HOH HOH . G 6 HOH A 76 376 3 HOH HOH . G 6 HOH A 77 377 9 HOH HOH . G 6 HOH A 78 378 123 HOH HOH . G 6 HOH A 79 379 83 HOH HOH . G 6 HOH A 80 380 46 HOH HOH . G 6 HOH A 81 381 72 HOH HOH . G 6 HOH A 82 382 108 HOH HOH . G 6 HOH A 83 383 109 HOH HOH . G 6 HOH A 84 384 122 HOH HOH . G 6 HOH A 85 385 24 HOH HOH . G 6 HOH A 86 386 10 HOH HOH . G 6 HOH A 87 387 135 HOH HOH . G 6 HOH A 88 388 129 HOH HOH . G 6 HOH A 89 389 84 HOH HOH . G 6 HOH A 90 390 116 HOH HOH . G 6 HOH A 91 391 47 HOH HOH . G 6 HOH A 92 392 66 HOH HOH . G 6 HOH A 93 393 107 HOH HOH . G 6 HOH A 94 394 71 HOH HOH . G 6 HOH A 95 395 97 HOH HOH . G 6 HOH A 96 396 21 HOH HOH . G 6 HOH A 97 397 132 HOH HOH . G 6 HOH A 98 398 53 HOH HOH . G 6 HOH A 99 399 124 HOH HOH . G 6 HOH A 100 400 121 HOH HOH . G 6 HOH A 101 401 52 HOH HOH . G 6 HOH A 102 402 136 HOH HOH . G 6 HOH A 103 403 49 HOH HOH . G 6 HOH A 104 404 82 HOH HOH . G 6 HOH A 105 405 119 HOH HOH . G 6 HOH A 106 406 94 HOH HOH . G 6 HOH A 107 407 27 HOH HOH . G 6 HOH A 108 408 74 HOH HOH . G 6 HOH A 109 409 111 HOH HOH . G 6 HOH A 110 410 68 HOH HOH . G 6 HOH A 111 411 80 HOH HOH . G 6 HOH A 112 412 133 HOH HOH . G 6 HOH A 113 413 103 HOH HOH . G 6 HOH A 114 414 141 HOH HOH . G 6 HOH A 115 415 48 HOH HOH . G 6 HOH A 116 416 117 HOH HOH . G 6 HOH A 117 417 75 HOH HOH . G 6 HOH A 118 418 56 HOH HOH . G 6 HOH A 119 419 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WPJ . . . C 3 -23.223 20.206 -4.975 1 27.87 ? C01 WPJ 202 A 1 HETATM 2 C C02 WPJ . . . C 3 -22.258 19.318 -4.146 1 25.3 ? C02 WPJ 202 A 1 HETATM 3 C C03 WPJ . . . C 3 -20.903 19.506 -4.74 1 26.74 ? C03 WPJ 202 A 1 HETATM 4 C C05 WPJ . . . C 3 -19.068 20.837 -4.968 1 24.91 ? C05 WPJ 202 A 1 HETATM 5 C C08 WPJ . . . C 3 -19.077 18.864 -6.12 1 27.36 ? C08 WPJ 202 A 1 HETATM 6 C C10 WPJ . . . C 3 -20.359 18.592 -5.595 1 24.48 ? C10 WPJ 202 A 1 HETATM 7 C C12 WPJ . . . C 3 -21.599 17.271 -7.235 1 27.56 ? C12 WPJ 202 A 1 HETATM 8 C C13 WPJ . . . C 3 -22.537 16.067 -7.172 1 26.58 ? C13 WPJ 202 A 1 HETATM 9 C C14 WPJ . . . C 3 -23.9 16.472 -6.601 1 25.88 ? C14 WPJ 202 A 1 HETATM 10 C C16 WPJ . . . C 3 -25.509 18.279 -7.064 1 31.21 ? C16 WPJ 202 A 1 HETATM 11 C C17 WPJ . . . C 3 -26.518 17.754 -6.268 1 33.28 ? C17 WPJ 202 A 1 HETATM 12 C C18 WPJ . . . C 3 -27.605 18.559 -5.939 1 36.08 ? C18 WPJ 202 A 1 HETATM 13 C C19 WPJ . . . C 3 -27.694 19.867 -6.376 1 34.7 ? C19 WPJ 202 A 1 HETATM 14 C C20 WPJ . . . C 3 -26.681 20.399 -7.172 1 32.3 ? C20 WPJ 202 A 1 HETATM 15 C C21 WPJ . . . C 3 -26.761 21.848 -7.637 1 29.77 ? C21 WPJ 202 A 1 HETATM 16 C C22 WPJ . . . C 3 -27.824 22.11 -8.73 1 35.03 ? C22 WPJ 202 A 1 HETATM 17 C C23 WPJ . . . C 3 -28.721 23.277 -8.374 1 39.7 ? C23 WPJ 202 A 1 HETATM 18 C C26 WPJ . . . C 3 -27.152 22.419 -10.115 1 40.75 ? C26 WPJ 202 A 1 HETATM 19 C C29 WPJ . . . C 3 -25.586 19.597 -7.511 1 30.18 ? C29 WPJ 202 A 1 HETATM 20 F F24 WPJ . . . C 3 -29.415 22.972 -7.21 1 45.91 ? F24 WPJ 202 A 1 HETATM 21 F F25 WPJ . . . C 3 -27.993 24.439 -8.074 1 40.73 ? F25 WPJ 202 A 1 HETATM 22 N N04 WPJ . . . C 3 -20.274 20.643 -4.428 1 24.13 ? N04 WPJ 202 A 1 HETATM 23 N N06 WPJ . . . C 3 -18.419 21.974 -4.675 1 24.18 ? N06 WPJ 202 A 1 HETATM 24 N N07 WPJ . . . C 3 -18.454 20.001 -5.813 1 27.41 ? N07 WPJ 202 A 1 HETATM 25 N N09 WPJ . . . C 3 -18.469 17.988 -6.948 1 27.75 ? N09 WPJ 202 A 1 HETATM 26 O O11 WPJ . . . C 3 -20.993 17.399 -5.897 1 28.59 ? O11 WPJ 202 A 1 HETATM 27 O O15 WPJ . . . C 3 -24.391 17.536 -7.431 1 29.6 ? O15 WPJ 202 A 1 HETATM 28 O O27 WPJ . . . C 3 -27.971 22.637 -11.05 1 33.97 ? O27 WPJ 202 A 1 HETATM 29 O O28 WPJ . . . C 3 -25.897 22.412 -10.109 1 33.29 ? O28 WPJ 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #