data_7KME # _model_server_result.job_id 15itO5NeUVa4DhP2cYnYQg _model_server_result.datetime_utc '2024-12-26 12:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":951}' # _entry.id 7KME # _exptl.entry_id 7KME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.2 _cell.angle_gamma 90 _cell.entry_id 7KME _cell.length_a 71.05 _cell.length_b 71.82 _cell.length_c 73.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KME _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 C C GLU 8 I GLU 362 1_555 C N TYS 9 I TYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 C C TYS 9 I TYS 363 1_555 C N LEU 10 I LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale3 D C ACE 1 J ACE 379 1_555 D N 0BN 2 J 0BN 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale4 D C 0BN 2 J 0BN 380 1_555 D N CHG 3 J CHG 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale5 D C CHG 3 J CHG 381 1_555 D N PRR 4 J PRR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 E NA NA . H NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 E NA NA . H NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc3 B O ARG 233 H ARG 221 1_555 F NA NA . H NA 951 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc4 B O LYS 236 H LYS 224 1_555 F NA NA . H NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc5 H O HOH . H HOH 492 1_555 F NA NA . H NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 H O HOH . H HOH 493 1_555 E NA NA . H NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc7 H O HOH . H HOH 495 1_555 E NA NA . H NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc8 H O HOH . H HOH 522 1_555 F NA NA . H NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc9 H O HOH . H HOH 531 1_555 F NA NA . H NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc10 H O HOH . H HOH 535 4_546 E NA NA . H NA 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc11 H O HOH . H HOH 548 1_555 F NA NA . H NA 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KME _atom_sites.fract_transf_matrix[1][1] 0.014075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002787 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA H 1 950 950 NA NA . F 5 NA H 1 951 951 NA NA . G 6 HOH L 1 404 404 HOH HOH . G 6 HOH L 2 407 407 HOH HOH . G 6 HOH L 3 408 408 HOH HOH . G 6 HOH L 4 416 416 HOH HOH . G 6 HOH L 5 433 433 HOH HOH . G 6 HOH L 6 437 437 HOH HOH . G 6 HOH L 7 446 446 HOH HOH . G 6 HOH L 8 455 455 HOH HOH . G 6 HOH L 9 459 459 HOH HOH . G 6 HOH L 10 470 470 HOH HOH . G 6 HOH L 11 478 478 HOH HOH . G 6 HOH L 12 490 490 HOH HOH . G 6 HOH L 13 502 502 HOH HOH . G 6 HOH L 14 524 524 HOH HOH . G 6 HOH L 15 528 528 HOH HOH . G 6 HOH L 16 542 542 HOH HOH . G 6 HOH L 17 546 546 HOH HOH . H 6 HOH H 1 400 400 HOH HOH . H 6 HOH H 2 401 401 HOH HOH . H 6 HOH H 3 402 402 HOH HOH . H 6 HOH H 4 403 403 HOH HOH . H 6 HOH H 5 405 405 HOH HOH . H 6 HOH H 6 406 406 HOH HOH . H 6 HOH H 7 409 409 HOH HOH . H 6 HOH H 8 410 410 HOH HOH . H 6 HOH H 9 411 411 HOH HOH . H 6 HOH H 10 412 412 HOH HOH . H 6 HOH H 11 413 413 HOH HOH . H 6 HOH H 12 414 414 HOH HOH . H 6 HOH H 13 415 415 HOH HOH . H 6 HOH H 14 417 417 HOH HOH . H 6 HOH H 15 418 418 HOH HOH . H 6 HOH H 16 419 419 HOH HOH . H 6 HOH H 17 420 420 HOH HOH . H 6 HOH H 18 421 421 HOH HOH . H 6 HOH H 19 422 422 HOH HOH . H 6 HOH H 20 424 424 HOH HOH . H 6 HOH H 21 425 425 HOH HOH . H 6 HOH H 22 429 429 HOH HOH . H 6 HOH H 23 430 430 HOH HOH . H 6 HOH H 24 432 432 HOH HOH . H 6 HOH H 25 434 434 HOH HOH . H 6 HOH H 26 435 435 HOH HOH . H 6 HOH H 27 436 436 HOH HOH . H 6 HOH H 28 438 438 HOH HOH . H 6 HOH H 29 439 439 HOH HOH . H 6 HOH H 30 440 440 HOH HOH . H 6 HOH H 31 441 441 HOH HOH . H 6 HOH H 32 442 442 HOH HOH . H 6 HOH H 33 443 443 HOH HOH . H 6 HOH H 34 444 444 HOH HOH . H 6 HOH H 35 447 447 HOH HOH . H 6 HOH H 36 448 448 HOH HOH . H 6 HOH H 37 451 451 HOH HOH . H 6 HOH H 38 452 452 HOH HOH . H 6 HOH H 39 453 453 HOH HOH . H 6 HOH H 40 454 454 HOH HOH . H 6 HOH H 41 456 456 HOH HOH . H 6 HOH H 42 457 457 HOH HOH . H 6 HOH H 43 458 458 HOH HOH . H 6 HOH H 44 460 460 HOH HOH . H 6 HOH H 45 461 461 HOH HOH . H 6 HOH H 46 462 462 HOH HOH . H 6 HOH H 47 463 463 HOH HOH . H 6 HOH H 48 464 464 HOH HOH . H 6 HOH H 49 465 465 HOH HOH . H 6 HOH H 50 466 466 HOH HOH . H 6 HOH H 51 467 467 HOH HOH . H 6 HOH H 52 468 468 HOH HOH . H 6 HOH H 53 469 469 HOH HOH . H 6 HOH H 54 471 471 HOH HOH . H 6 HOH H 55 472 472 HOH HOH . H 6 HOH H 56 473 473 HOH HOH . H 6 HOH H 57 474 474 HOH HOH . H 6 HOH H 58 475 475 HOH HOH . H 6 HOH H 59 476 476 HOH HOH . H 6 HOH H 60 477 477 HOH HOH . H 6 HOH H 61 479 479 HOH HOH . H 6 HOH H 62 481 481 HOH HOH . H 6 HOH H 63 482 482 HOH HOH . H 6 HOH H 64 484 484 HOH HOH . H 6 HOH H 65 485 485 HOH HOH . H 6 HOH H 66 486 486 HOH HOH . H 6 HOH H 67 487 487 HOH HOH . H 6 HOH H 68 488 488 HOH HOH . H 6 HOH H 69 491 491 HOH HOH . H 6 HOH H 70 492 492 HOH HOH . H 6 HOH H 71 493 493 HOH HOH . H 6 HOH H 72 494 494 HOH HOH . H 6 HOH H 73 495 495 HOH HOH . H 6 HOH H 74 498 498 HOH HOH . H 6 HOH H 75 501 501 HOH HOH . H 6 HOH H 76 505 505 HOH HOH . H 6 HOH H 77 506 506 HOH HOH . H 6 HOH H 78 507 507 HOH HOH . H 6 HOH H 79 509 509 HOH HOH . H 6 HOH H 80 510 510 HOH HOH . H 6 HOH H 81 511 511 HOH HOH . H 6 HOH H 82 513 513 HOH HOH . H 6 HOH H 83 516 516 HOH HOH . H 6 HOH H 84 517 517 HOH HOH . H 6 HOH H 85 518 518 HOH HOH . H 6 HOH H 86 519 519 HOH HOH . H 6 HOH H 87 520 520 HOH HOH . H 6 HOH H 88 521 521 HOH HOH . H 6 HOH H 89 522 522 HOH HOH . H 6 HOH H 90 523 523 HOH HOH . H 6 HOH H 91 525 525 HOH HOH . H 6 HOH H 92 526 526 HOH HOH . H 6 HOH H 93 531 531 HOH HOH . H 6 HOH H 94 533 533 HOH HOH . H 6 HOH H 95 534 534 HOH HOH . H 6 HOH H 96 535 535 HOH HOH . H 6 HOH H 97 536 536 HOH HOH . H 6 HOH H 98 537 537 HOH HOH . H 6 HOH H 99 539 539 HOH HOH . H 6 HOH H 100 540 540 HOH HOH . H 6 HOH H 101 541 541 HOH HOH . H 6 HOH H 102 545 545 HOH HOH . H 6 HOH H 103 548 548 HOH HOH . H 6 HOH H 104 549 549 HOH HOH . H 6 HOH H 105 551 551 HOH HOH . H 6 HOH H 106 552 552 HOH HOH . I 6 HOH I 1 483 483 HOH HOH . I 6 HOH I 2 499 499 HOH HOH . I 6 HOH I 3 508 508 HOH HOH . I 6 HOH I 4 544 544 HOH HOH . I 6 HOH I 5 547 547 HOH HOH . J 6 HOH J 1 527 527 HOH HOH . J 6 HOH J 2 529 529 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 5.058 _atom_site.Cartn_y -14.168 _atom_site.Cartn_z 30.586 _atom_site.occupancy 0.9 _atom_site.B_iso_or_equiv 23.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 951 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #