data_7KMF # _model_server_result.job_id 9nAZRM3wNmxdjI6C5keuzg _model_server_result.datetime_utc '2024-11-22 19:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 7KMF # _exptl.entry_id 7KMF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 260.136 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KMF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 214 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 198 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 465 _struct_conn.ptnr2_auth_asym_id F _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 465 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7KMF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 F6P H 1 401 401 F6P F6P . L 6 F6P G 1 401 401 F6P F6P . M 7 HOH C 1 401 14 HOH HOH . M 7 HOH C 2 402 10 HOH HOH . M 7 HOH C 3 403 8 HOH HOH . M 7 HOH C 4 404 15 HOH HOH . M 7 HOH C 5 405 1 HOH HOH . N 7 HOH D 1 401 17 HOH HOH . N 7 HOH D 2 402 16 HOH HOH . N 7 HOH D 3 403 9 HOH HOH . O 7 HOH F 1 601 11 HOH HOH . P 7 HOH E 1 601 13 HOH HOH . P 7 HOH E 2 602 12 HOH HOH . Q 7 HOH H 1 501 18 HOH HOH . Q 7 HOH H 2 502 2 HOH HOH . Q 7 HOH H 3 503 3 HOH HOH . R 7 HOH G 1 501 7 HOH HOH . R 7 HOH G 2 502 5 HOH HOH . R 7 HOH G 3 503 4 HOH HOH . S 7 HOH B 1 801 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . L 6 170.157 163.347 141.343 1 82.95 ? O1 F6P 401 G 1 HETATM 2 C C1 F6P . . . L 6 169.28 163.404 140.255 1 82.95 ? C1 F6P 401 G 1 HETATM 3 C C2 F6P . . . L 6 167.893 163.778 140.758 1 82.95 ? C2 F6P 401 G 1 HETATM 4 O O2 F6P . . . L 6 166.978 163.754 139.726 1 82.95 ? O2 F6P 401 G 1 HETATM 5 C C3 F6P . . . L 6 167.898 164.968 141.315 1 82.95 ? C3 F6P 401 G 1 HETATM 6 O O3 F6P . . . L 6 167.594 165.951 140.313 1 82.95 ? O3 F6P 401 G 1 HETATM 7 C C4 F6P . . . L 6 166.683 164.935 142.385 1 82.95 ? C4 F6P 401 G 1 HETATM 8 O O4 F6P . . . L 6 166.942 165.884 143.398 1 82.95 ? O4 F6P 401 G 1 HETATM 9 C C5 F6P . . . L 6 166.636 163.667 142.891 1 82.95 ? C5 F6P 401 G 1 HETATM 10 O O5 F6P . . . L 6 167.445 162.795 141.928 1 82.95 ? O5 F6P 401 G 1 HETATM 11 C C6 F6P . . . L 6 165.206 163.157 142.941 1 82.95 ? C6 F6P 401 G 1 HETATM 12 O O6 F6P . . . L 6 164.938 162.344 141.834 1 82.95 ? O6 F6P 401 G 1 HETATM 13 P P F6P . . . L 6 163.358 162.072 141.467 1 82.95 ? P F6P 401 G 1 HETATM 14 O O1P F6P . . . L 6 163.074 162.387 140.018 1 82.95 ? O1P F6P 401 G 1 HETATM 15 O O2P F6P . . . L 6 162.519 162.93 142.371 1 82.95 ? O2P F6P 401 G 1 HETATM 16 O O3P F6P . . . L 6 163.023 160.626 141.709 1 82.95 ? O3P F6P 401 G 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #