data_7KMG # _model_server_result.job_id k3osAqEZCdkBR944rRh5WQ _model_server_result.datetime_utc '2024-11-01 10:29:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 7KMG # _exptl.entry_id 7KMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.62 _cell.angle_gamma 90 _cell.entry_id 7KMG _cell.length_a 42.317 _cell.length_b 280.364 _cell.length_c 68.909 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J,K 1 1 D,E,F,H,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 152 A CYS 152 1_555 A SG CYS 208 A CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 152 A CYS 152 1_555 A SG CYS 208 A CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf5 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf6 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.059 ? disulf ? disulf8 C SG CYS 8 C CYS 336 1_555 C SG CYS 33 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 C SG CYS 51 C CYS 379 1_555 C SG CYS 104 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 C SG CYS 63 C CYS 391 1_555 C SG CYS 197 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 C SG CYS 152 C CYS 480 1_555 C SG CYS 160 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf12 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf13 D SG CYS 139 D CYS 139 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf14 D SG CYS 152 D CYS 152 1_555 D SG CYS 208 D CYS 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 D SG CYS 152 D CYS 152 1_555 D SG CYS 208 D CYS 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf16 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf17 E SG CYS 134 E CYS 134 1_555 E SG CYS 194 E CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.058 ? disulf ? disulf18 E SG CYS 134 E CYS 134 1_555 E SG CYS 194 E CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 F SG CYS 8 F CYS 336 1_555 F SG CYS 33 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 F SG CYS 51 F CYS 379 1_555 F SG CYS 104 F CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf21 F SG CYS 63 F CYS 391 1_555 F SG CYS 197 F CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf22 F SG CYS 152 F CYS 480 1_555 F SG CYS 160 F CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7KMG _atom_sites.fract_transf_matrix[1][1] 0.023631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL A 1 301 1 GOL GOL . H 4 GOL E 1 301 2 GOL GOL . I 5 HOH A 1 401 149 HOH HOH . I 5 HOH A 2 402 162 HOH HOH . I 5 HOH A 3 403 156 HOH HOH . I 5 HOH A 4 404 165 HOH HOH . I 5 HOH A 5 405 120 HOH HOH . I 5 HOH A 6 406 177 HOH HOH . I 5 HOH A 7 407 40 HOH HOH . I 5 HOH A 8 408 54 HOH HOH . I 5 HOH A 9 409 82 HOH HOH . I 5 HOH A 10 410 98 HOH HOH . I 5 HOH A 11 411 184 HOH HOH . I 5 HOH A 12 412 137 HOH HOH . I 5 HOH A 13 413 16 HOH HOH . I 5 HOH A 14 414 17 HOH HOH . I 5 HOH A 15 415 77 HOH HOH . I 5 HOH A 16 416 25 HOH HOH . I 5 HOH A 17 417 12 HOH HOH . I 5 HOH A 18 418 123 HOH HOH . I 5 HOH A 19 419 39 HOH HOH . I 5 HOH A 20 420 71 HOH HOH . I 5 HOH A 21 421 155 HOH HOH . I 5 HOH A 22 422 83 HOH HOH . I 5 HOH A 23 423 11 HOH HOH . I 5 HOH A 24 424 160 HOH HOH . I 5 HOH A 25 425 50 HOH HOH . I 5 HOH A 26 426 41 HOH HOH . I 5 HOH A 27 427 115 HOH HOH . I 5 HOH A 28 428 146 HOH HOH . I 5 HOH A 29 429 5 HOH HOH . I 5 HOH A 30 430 22 HOH HOH . I 5 HOH A 31 431 106 HOH HOH . I 5 HOH A 32 432 72 HOH HOH . I 5 HOH A 33 433 183 HOH HOH . I 5 HOH A 34 434 117 HOH HOH . I 5 HOH A 35 435 27 HOH HOH . I 5 HOH A 36 436 57 HOH HOH . I 5 HOH A 37 437 93 HOH HOH . I 5 HOH A 38 438 95 HOH HOH . I 5 HOH A 39 439 62 HOH HOH . I 5 HOH A 40 440 158 HOH HOH . I 5 HOH A 41 441 169 HOH HOH . I 5 HOH A 42 442 64 HOH HOH . I 5 HOH A 43 443 164 HOH HOH . J 5 HOH B 1 301 174 HOH HOH . J 5 HOH B 2 302 18 HOH HOH . J 5 HOH B 3 303 69 HOH HOH . J 5 HOH B 4 304 92 HOH HOH . J 5 HOH B 5 305 141 HOH HOH . J 5 HOH B 6 306 7 HOH HOH . J 5 HOH B 7 307 113 HOH HOH . J 5 HOH B 8 308 13 HOH HOH . J 5 HOH B 9 309 15 HOH HOH . J 5 HOH B 10 310 21 HOH HOH . J 5 HOH B 11 311 193 HOH HOH . J 5 HOH B 12 312 133 HOH HOH . J 5 HOH B 13 313 161 HOH HOH . J 5 HOH B 14 314 10 HOH HOH . J 5 HOH B 15 315 6 HOH HOH . J 5 HOH B 16 316 145 HOH HOH . J 5 HOH B 17 317 173 HOH HOH . J 5 HOH B 18 318 23 HOH HOH . J 5 HOH B 19 319 42 HOH HOH . J 5 HOH B 20 320 142 HOH HOH . J 5 HOH B 21 321 1 HOH HOH . J 5 HOH B 22 322 61 HOH HOH . J 5 HOH B 23 323 89 HOH HOH . J 5 HOH B 24 324 37 HOH HOH . J 5 HOH B 25 325 85 HOH HOH . J 5 HOH B 26 326 58 HOH HOH . J 5 HOH B 27 327 135 HOH HOH . J 5 HOH B 28 328 65 HOH HOH . J 5 HOH B 29 329 109 HOH HOH . J 5 HOH B 30 330 127 HOH HOH . J 5 HOH B 31 331 163 HOH HOH . J 5 HOH B 32 332 29 HOH HOH . J 5 HOH B 33 333 131 HOH HOH . J 5 HOH B 34 334 84 HOH HOH . J 5 HOH B 35 335 100 HOH HOH . J 5 HOH B 36 336 2 HOH HOH . J 5 HOH B 37 337 138 HOH HOH . J 5 HOH B 38 338 147 HOH HOH . J 5 HOH B 39 339 136 HOH HOH . J 5 HOH B 40 340 55 HOH HOH . J 5 HOH B 41 341 63 HOH HOH . J 5 HOH B 42 342 78 HOH HOH . J 5 HOH B 43 343 68 HOH HOH . J 5 HOH B 44 344 38 HOH HOH . J 5 HOH B 45 345 119 HOH HOH . J 5 HOH B 46 346 94 HOH HOH . J 5 HOH B 47 347 190 HOH HOH . J 5 HOH B 48 348 19 HOH HOH . J 5 HOH B 49 349 166 HOH HOH . K 5 HOH C 1 601 186 HOH HOH . K 5 HOH C 2 602 178 HOH HOH . K 5 HOH C 3 603 43 HOH HOH . K 5 HOH C 4 604 176 HOH HOH . K 5 HOH C 5 605 75 HOH HOH . K 5 HOH C 6 606 66 HOH HOH . K 5 HOH C 7 607 49 HOH HOH . K 5 HOH C 8 608 28 HOH HOH . K 5 HOH C 9 609 91 HOH HOH . K 5 HOH C 10 610 52 HOH HOH . K 5 HOH C 11 611 187 HOH HOH . K 5 HOH C 12 612 130 HOH HOH . K 5 HOH C 13 613 185 HOH HOH . K 5 HOH C 14 614 111 HOH HOH . K 5 HOH C 15 615 86 HOH HOH . K 5 HOH C 16 616 32 HOH HOH . K 5 HOH C 17 617 140 HOH HOH . L 5 HOH D 1 301 170 HOH HOH . L 5 HOH D 2 302 168 HOH HOH . L 5 HOH D 3 303 90 HOH HOH . L 5 HOH D 4 304 76 HOH HOH . L 5 HOH D 5 305 125 HOH HOH . L 5 HOH D 6 306 132 HOH HOH . L 5 HOH D 7 307 189 HOH HOH . L 5 HOH D 8 308 4 HOH HOH . L 5 HOH D 9 309 196 HOH HOH . L 5 HOH D 10 310 88 HOH HOH . L 5 HOH D 11 311 157 HOH HOH . L 5 HOH D 12 312 8 HOH HOH . L 5 HOH D 13 313 80 HOH HOH . L 5 HOH D 14 314 122 HOH HOH . L 5 HOH D 15 315 105 HOH HOH . L 5 HOH D 16 316 150 HOH HOH . L 5 HOH D 17 317 46 HOH HOH . L 5 HOH D 18 318 9 HOH HOH . L 5 HOH D 19 319 197 HOH HOH . L 5 HOH D 20 320 108 HOH HOH . L 5 HOH D 21 321 139 HOH HOH . L 5 HOH D 22 322 116 HOH HOH . L 5 HOH D 23 323 159 HOH HOH . L 5 HOH D 24 324 70 HOH HOH . L 5 HOH D 25 325 182 HOH HOH . L 5 HOH D 26 326 124 HOH HOH . L 5 HOH D 27 327 97 HOH HOH . L 5 HOH D 28 328 30 HOH HOH . L 5 HOH D 29 329 87 HOH HOH . L 5 HOH D 30 330 180 HOH HOH . L 5 HOH D 31 331 134 HOH HOH . L 5 HOH D 32 332 34 HOH HOH . M 5 HOH E 1 401 167 HOH HOH . M 5 HOH E 2 402 181 HOH HOH . M 5 HOH E 3 403 152 HOH HOH . M 5 HOH E 4 404 112 HOH HOH . M 5 HOH E 5 405 47 HOH HOH . M 5 HOH E 6 406 73 HOH HOH . M 5 HOH E 7 407 3 HOH HOH . M 5 HOH E 8 408 143 HOH HOH . M 5 HOH E 9 409 175 HOH HOH . M 5 HOH E 10 410 60 HOH HOH . M 5 HOH E 11 411 56 HOH HOH . M 5 HOH E 12 412 153 HOH HOH . M 5 HOH E 13 413 101 HOH HOH . M 5 HOH E 14 414 110 HOH HOH . M 5 HOH E 15 415 144 HOH HOH . M 5 HOH E 16 416 24 HOH HOH . M 5 HOH E 17 417 102 HOH HOH . M 5 HOH E 18 418 99 HOH HOH . M 5 HOH E 19 419 48 HOH HOH . M 5 HOH E 20 420 121 HOH HOH . M 5 HOH E 21 421 172 HOH HOH . M 5 HOH E 22 422 107 HOH HOH . M 5 HOH E 23 423 36 HOH HOH . M 5 HOH E 24 424 53 HOH HOH . M 5 HOH E 25 425 20 HOH HOH . M 5 HOH E 26 426 191 HOH HOH . M 5 HOH E 27 427 96 HOH HOH . M 5 HOH E 28 428 33 HOH HOH . M 5 HOH E 29 429 44 HOH HOH . M 5 HOH E 30 430 126 HOH HOH . M 5 HOH E 31 431 114 HOH HOH . M 5 HOH E 32 432 104 HOH HOH . M 5 HOH E 33 433 74 HOH HOH . M 5 HOH E 34 434 14 HOH HOH . M 5 HOH E 35 435 128 HOH HOH . M 5 HOH E 36 436 103 HOH HOH . M 5 HOH E 37 437 171 HOH HOH . M 5 HOH E 38 438 81 HOH HOH . M 5 HOH E 39 439 59 HOH HOH . M 5 HOH E 40 440 194 HOH HOH . M 5 HOH E 41 441 192 HOH HOH . M 5 HOH E 42 442 195 HOH HOH . N 5 HOH F 1 601 67 HOH HOH . N 5 HOH F 2 602 79 HOH HOH . N 5 HOH F 3 603 154 HOH HOH . N 5 HOH F 4 604 31 HOH HOH . N 5 HOH F 5 605 26 HOH HOH . N 5 HOH F 6 606 179 HOH HOH . N 5 HOH F 7 607 188 HOH HOH . N 5 HOH F 8 608 129 HOH HOH . N 5 HOH F 9 609 35 HOH HOH . N 5 HOH F 10 610 148 HOH HOH . N 5 HOH F 11 611 118 HOH HOH . N 5 HOH F 12 612 51 HOH HOH . N 5 HOH F 13 613 151 HOH HOH . N 5 HOH F 14 614 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 14.289 -77.143 -54.085 1 30.82 ? C1 GOL 301 E 1 HETATM 2 O O1 GOL . . . H 4 14.63 -78.462 -54.551 1 29.77 ? O1 GOL 301 E 1 HETATM 3 C C2 GOL . . . H 4 15.414 -76.599 -53.197 1 39.69 ? C2 GOL 301 E 1 HETATM 4 O O2 GOL . . . H 4 15.614 -77.457 -52.062 1 45.58 ? O2 GOL 301 E 1 HETATM 5 C C3 GOL . . . H 4 16.718 -76.53 -53.977 1 31.46 ? C3 GOL 301 E 1 HETATM 6 O O3 GOL . . . H 4 17.63 -75.699 -53.261 1 27.1 ? O3 GOL 301 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #