data_7KMQ
#
_model_server_result.job_id            xzzluPITpZh5kza9gkM_LQ 
_model_server_result.datetime_utc      '2024-12-06 14:17:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kmq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":801}' 
#
_entry.id    7KMQ 
#
_exptl.entry_id    7KMQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KMQ 
_cell.length_a            103.6 
_cell.length_b            103.52 
_cell.length_c            173.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KMQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 61 A GLY 65 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc2 A OD2 ASP 81 A ASP 85 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc3 A O SER 364 A SER 368 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc4 A O GLN 370 A GLN 374 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc5 F CA CA . A CA 804 1_555 K O HOH . A HOH 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? 
metalc ? metalc6 B O GLY 61 B GLY 65 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc7 B OD2 ASP 81 B ASP 85 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc8 B O SER 364 B SER 368 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc9 B O GLN 370 B GLN 374 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc10 J CA CA . B CA 804 1_555 L O HOH . B HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7KMQ 
_atom_sites.fract_transf_matrix[1][1]    0.009653 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 801 2 GOL GOL . 
D 2 GOL A 1 802 5 GOL GOL . 
E 2 GOL A 1 803 6 GOL GOL . 
F 3 CA A 1 804 1 CA CA . 
G 2 GOL B 1 801 1 GOL GOL . 
H 2 GOL B 1 802 3 GOL GOL . 
I 2 GOL B 1 803 4 GOL GOL . 
J 3 CA B 1 804 2 CA CA . 
K 4 HOH A 1 901 186 HOH HOH . 
K 4 HOH A 2 902 190 HOH HOH . 
K 4 HOH A 3 903 86 HOH HOH . 
K 4 HOH A 4 904 113 HOH HOH . 
K 4 HOH A 5 905 184 HOH HOH . 
K 4 HOH A 6 906 70 HOH HOH . 
K 4 HOH A 7 907 138 HOH HOH . 
K 4 HOH A 8 908 110 HOH HOH . 
K 4 HOH A 9 909 124 HOH HOH . 
K 4 HOH A 10 910 35 HOH HOH . 
K 4 HOH A 11 911 51 HOH HOH . 
K 4 HOH A 12 912 133 HOH HOH . 
K 4 HOH A 13 913 103 HOH HOH . 
K 4 HOH A 14 914 120 HOH HOH . 
K 4 HOH A 15 915 153 HOH HOH . 
K 4 HOH A 16 916 61 HOH HOH . 
K 4 HOH A 17 917 63 HOH HOH . 
K 4 HOH A 18 918 94 HOH HOH . 
K 4 HOH A 19 919 2 HOH HOH . 
K 4 HOH A 20 920 156 HOH HOH . 
K 4 HOH A 21 921 111 HOH HOH . 
K 4 HOH A 22 922 32 HOH HOH . 
K 4 HOH A 23 923 39 HOH HOH . 
K 4 HOH A 24 924 139 HOH HOH . 
K 4 HOH A 25 925 68 HOH HOH . 
K 4 HOH A 26 926 83 HOH HOH . 
K 4 HOH A 27 927 40 HOH HOH . 
K 4 HOH A 28 928 108 HOH HOH . 
K 4 HOH A 29 929 150 HOH HOH . 
K 4 HOH A 30 930 52 HOH HOH . 
K 4 HOH A 31 931 140 HOH HOH . 
K 4 HOH A 32 932 126 HOH HOH . 
K 4 HOH A 33 933 33 HOH HOH . 
K 4 HOH A 34 934 69 HOH HOH . 
K 4 HOH A 35 935 73 HOH HOH . 
K 4 HOH A 36 936 82 HOH HOH . 
K 4 HOH A 37 937 158 HOH HOH . 
K 4 HOH A 38 938 15 HOH HOH . 
K 4 HOH A 39 939 100 HOH HOH . 
K 4 HOH A 40 940 60 HOH HOH . 
K 4 HOH A 41 941 54 HOH HOH . 
K 4 HOH A 42 942 12 HOH HOH . 
K 4 HOH A 43 943 144 HOH HOH . 
K 4 HOH A 44 944 160 HOH HOH . 
K 4 HOH A 45 945 167 HOH HOH . 
K 4 HOH A 46 946 197 HOH HOH . 
K 4 HOH A 47 947 171 HOH HOH . 
K 4 HOH A 48 948 161 HOH HOH . 
K 4 HOH A 49 949 72 HOH HOH . 
K 4 HOH A 50 950 101 HOH HOH . 
K 4 HOH A 51 951 135 HOH HOH . 
K 4 HOH A 52 952 76 HOH HOH . 
K 4 HOH A 53 953 92 HOH HOH . 
K 4 HOH A 54 954 131 HOH HOH . 
K 4 HOH A 55 955 41 HOH HOH . 
K 4 HOH A 56 956 165 HOH HOH . 
K 4 HOH A 57 957 3 HOH HOH . 
K 4 HOH A 58 958 177 HOH HOH . 
K 4 HOH A 59 959 6 HOH HOH . 
K 4 HOH A 60 960 22 HOH HOH . 
K 4 HOH A 61 961 99 HOH HOH . 
K 4 HOH A 62 962 122 HOH HOH . 
K 4 HOH A 63 963 125 HOH HOH . 
K 4 HOH A 64 964 105 HOH HOH . 
K 4 HOH A 65 965 90 HOH HOH . 
K 4 HOH A 66 966 189 HOH HOH . 
K 4 HOH A 67 967 88 HOH HOH . 
K 4 HOH A 68 968 174 HOH HOH . 
K 4 HOH A 69 969 71 HOH HOH . 
K 4 HOH A 70 970 97 HOH HOH . 
K 4 HOH A 71 971 149 HOH HOH . 
K 4 HOH A 72 972 38 HOH HOH . 
K 4 HOH A 73 973 14 HOH HOH . 
K 4 HOH A 74 974 87 HOH HOH . 
K 4 HOH A 75 975 28 HOH HOH . 
K 4 HOH A 76 976 85 HOH HOH . 
K 4 HOH A 77 977 56 HOH HOH . 
K 4 HOH A 78 978 183 HOH HOH . 
K 4 HOH A 79 979 24 HOH HOH . 
K 4 HOH A 80 980 193 HOH HOH . 
K 4 HOH A 81 981 115 HOH HOH . 
K 4 HOH A 82 982 78 HOH HOH . 
K 4 HOH A 83 983 91 HOH HOH . 
K 4 HOH A 84 984 159 HOH HOH . 
K 4 HOH A 85 985 13 HOH HOH . 
K 4 HOH A 86 986 102 HOH HOH . 
K 4 HOH A 87 987 67 HOH HOH . 
K 4 HOH A 88 988 27 HOH HOH . 
K 4 HOH A 89 989 121 HOH HOH . 
K 4 HOH A 90 990 170 HOH HOH . 
K 4 HOH A 91 991 5 HOH HOH . 
K 4 HOH A 92 992 59 HOH HOH . 
K 4 HOH A 93 993 191 HOH HOH . 
K 4 HOH A 94 994 199 HOH HOH . 
K 4 HOH A 95 995 37 HOH HOH . 
K 4 HOH A 96 996 109 HOH HOH . 
K 4 HOH A 97 997 75 HOH HOH . 
K 4 HOH A 98 998 36 HOH HOH . 
K 4 HOH A 99 999 84 HOH HOH . 
K 4 HOH A 100 1000 26 HOH HOH . 
L 4 HOH B 1 901 128 HOH HOH . 
L 4 HOH B 2 902 55 HOH HOH . 
L 4 HOH B 3 903 9 HOH HOH . 
L 4 HOH B 4 904 64 HOH HOH . 
L 4 HOH B 5 905 168 HOH HOH . 
L 4 HOH B 6 906 77 HOH HOH . 
L 4 HOH B 7 907 182 HOH HOH . 
L 4 HOH B 8 908 62 HOH HOH . 
L 4 HOH B 9 909 21 HOH HOH . 
L 4 HOH B 10 910 192 HOH HOH . 
L 4 HOH B 11 911 104 HOH HOH . 
L 4 HOH B 12 912 16 HOH HOH . 
L 4 HOH B 13 913 200 HOH HOH . 
L 4 HOH B 14 914 29 HOH HOH . 
L 4 HOH B 15 915 106 HOH HOH . 
L 4 HOH B 16 916 195 HOH HOH . 
L 4 HOH B 17 917 123 HOH HOH . 
L 4 HOH B 18 918 96 HOH HOH . 
L 4 HOH B 19 919 143 HOH HOH . 
L 4 HOH B 20 920 169 HOH HOH . 
L 4 HOH B 21 921 58 HOH HOH . 
L 4 HOH B 22 922 1 HOH HOH . 
L 4 HOH B 23 923 134 HOH HOH . 
L 4 HOH B 24 924 164 HOH HOH . 
L 4 HOH B 25 925 141 HOH HOH . 
L 4 HOH B 26 926 43 HOH HOH . 
L 4 HOH B 27 927 187 HOH HOH . 
L 4 HOH B 28 928 34 HOH HOH . 
L 4 HOH B 29 929 81 HOH HOH . 
L 4 HOH B 30 930 11 HOH HOH . 
L 4 HOH B 31 931 155 HOH HOH . 
L 4 HOH B 32 932 79 HOH HOH . 
L 4 HOH B 33 933 163 HOH HOH . 
L 4 HOH B 34 934 194 HOH HOH . 
L 4 HOH B 35 935 175 HOH HOH . 
L 4 HOH B 36 936 95 HOH HOH . 
L 4 HOH B 37 937 172 HOH HOH . 
L 4 HOH B 38 938 127 HOH HOH . 
L 4 HOH B 39 939 162 HOH HOH . 
L 4 HOH B 40 940 154 HOH HOH . 
L 4 HOH B 41 941 188 HOH HOH . 
L 4 HOH B 42 942 49 HOH HOH . 
L 4 HOH B 43 943 4 HOH HOH . 
L 4 HOH B 44 944 185 HOH HOH . 
L 4 HOH B 45 945 98 HOH HOH . 
L 4 HOH B 46 946 74 HOH HOH . 
L 4 HOH B 47 947 198 HOH HOH . 
L 4 HOH B 48 948 166 HOH HOH . 
L 4 HOH B 49 949 23 HOH HOH . 
L 4 HOH B 50 950 42 HOH HOH . 
L 4 HOH B 51 951 152 HOH HOH . 
L 4 HOH B 52 952 57 HOH HOH . 
L 4 HOH B 53 953 89 HOH HOH . 
L 4 HOH B 54 954 145 HOH HOH . 
L 4 HOH B 55 955 137 HOH HOH . 
L 4 HOH B 56 956 142 HOH HOH . 
L 4 HOH B 57 957 20 HOH HOH . 
L 4 HOH B 58 958 147 HOH HOH . 
L 4 HOH B 59 959 66 HOH HOH . 
L 4 HOH B 60 960 116 HOH HOH . 
L 4 HOH B 61 961 48 HOH HOH . 
L 4 HOH B 62 962 118 HOH HOH . 
L 4 HOH B 63 963 10 HOH HOH . 
L 4 HOH B 64 964 136 HOH HOH . 
L 4 HOH B 65 965 46 HOH HOH . 
L 4 HOH B 66 966 146 HOH HOH . 
L 4 HOH B 67 967 31 HOH HOH . 
L 4 HOH B 68 968 25 HOH HOH . 
L 4 HOH B 69 969 8 HOH HOH . 
L 4 HOH B 70 970 19 HOH HOH . 
L 4 HOH B 71 971 179 HOH HOH . 
L 4 HOH B 72 972 45 HOH HOH . 
L 4 HOH B 73 973 44 HOH HOH . 
L 4 HOH B 74 974 17 HOH HOH . 
L 4 HOH B 75 975 196 HOH HOH . 
L 4 HOH B 76 976 176 HOH HOH . 
L 4 HOH B 77 977 18 HOH HOH . 
L 4 HOH B 78 978 119 HOH HOH . 
L 4 HOH B 79 979 173 HOH HOH . 
L 4 HOH B 80 980 157 HOH HOH . 
L 4 HOH B 81 981 7 HOH HOH . 
L 4 HOH B 82 982 132 HOH HOH . 
L 4 HOH B 83 983 107 HOH HOH . 
L 4 HOH B 84 984 130 HOH HOH . 
L 4 HOH B 85 985 93 HOH HOH . 
L 4 HOH B 86 986 80 HOH HOH . 
L 4 HOH B 87 987 65 HOH HOH . 
L 4 HOH B 88 988 117 HOH HOH . 
L 4 HOH B 89 989 50 HOH HOH . 
L 4 HOH B 90 990 181 HOH HOH . 
L 4 HOH B 91 991 180 HOH HOH . 
L 4 HOH B 92 992 148 HOH HOH . 
L 4 HOH B 93 993 202 HOH HOH . 
L 4 HOH B 94 994 129 HOH HOH . 
L 4 HOH B 95 995 201 HOH HOH . 
L 4 HOH B 96 996 112 HOH HOH . 
L 4 HOH B 97 997 30 HOH HOH . 
L 4 HOH B 98 998 114 HOH HOH . 
L 4 HOH B 99 999 53 HOH HOH . 
L 4 HOH B 100 1000 178 HOH HOH . 
L 4 HOH B 101 1001 47 HOH HOH . 
L 4 HOH B 102 1002 151 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 2 92.866 79.101 55.594 1 38.38 ? C1 GOL 801 B 1 
HETATM 2 O O1 GOL . . . G 2 92.845 79.933 54.478 1 41.17 ? O1 GOL 801 B 1 
HETATM 3 C C2 GOL . . . G 2 93.656 79.844 56.693 1 36.61 ? C2 GOL 801 B 1 
HETATM 4 O O2 GOL . . . G 2 93.108 81.082 56.979 1 45.75 ? O2 GOL 801 B 1 
HETATM 5 C C3 GOL . . . G 2 93.635 78.891 57.914 1 41.28 ? C3 GOL 801 B 1 
HETATM 6 O O3 GOL . . . G 2 94.747 78.055 57.799 1 39.78 ? O3 GOL 801 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#