data_7KO6
#
_model_server_result.job_id            C5cwX_ia6Jp_ZsatlY3h_A 
_model_server_result.datetime_utc      '2024-11-27 23:11:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ko6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7KO6 
#
_exptl.entry_id    7KO6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.534 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ingenol-3-angelate 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.39 
_cell.angle_gamma         90 
_cell.entry_id            7KO6 
_cell.length_a            34.384 
_cell.length_b            25.909 
_cell.length_c            57.731 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KO6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 3 A HIS 231 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc2 A SG CYS 16 A CYS 244 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 A SG CYS 19 A CYS 247 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc4 A SG CYS 33 A CYS 261 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc5 A SG CYS 36 A CYS 264 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc6 A ND1 HIS 41 A HIS 269 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc7 A SG CYS 44 A CYS 272 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc8 A SG CYS 52 A CYS 280 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
#
_chem_comp.formula           'C25 H34 O6' 
_chem_comp.formula_weight    430.534 
_chem_comp.id                WUD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ingenol-3-angelate 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ingenol mebutate;(1aR,2S,5R,5aS,6S,8aS,9R,10aR)-5,5a-dihydroxy-4-(hydroxymethyl)-1,1,7,9-tetramethyl-11-oxo-1a,2,5,5a,6,9,10,10a-octahydro-1H-2,8a-methanocyclopenta[a]cyclopropa[e][10]annulen-6-yl (2Z)-2-methylbut-2-enoate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 WUD sing 355 n n 
C3 C2 WUD sing 356 n n 
C21 C20 WUD sing 357 n n 
C21 C8 WUD sing 358 n n 
C24 C6 WUD sing 359 n n 
C20 C16 WUD sing 360 n n 
C7 C6 WUD doub 361 n n 
C7 C8 WUD sing 362 n n 
C2 C1 WUD doub 363 z n 
C2 C4 WUD sing 364 n n 
C16 C17 WUD sing 365 n n 
C16 C15 WUD sing 366 n n 
C1 C WUD sing 367 n n 
C6 C5 WUD sing 368 n n 
O1 C4 WUD sing 369 n n 
O1 C5 WUD sing 370 n n 
C8 C14 WUD sing 371 n n 
C8 C9 WUD sing 372 n n 
C4 O WUD doub 373 n n 
O2 C14 WUD doub 374 n n 
C19 C17 WUD sing 375 n n 
C5 C9 WUD sing 376 n n 
C14 C13 WUD sing 377 n n 
C17 C15 WUD sing 378 n n 
C17 C18 WUD sing 379 n n 
C15 C13 WUD sing 380 n n 
C9 O5 WUD sing 381 n n 
C9 C10 WUD sing 382 n n 
C13 C12 WUD sing 383 n n 
C10 O4 WUD sing 384 n n 
C10 C11 WUD sing 385 n n 
C12 C11 WUD doub 386 n n 
C11 C23 WUD sing 387 n n 
C23 O3 WUD sing 388 n n 
C H1 WUD sing 389 n n 
C H2 WUD sing 390 n n 
C H3 WUD sing 391 n n 
C1 H4 WUD sing 392 n n 
C10 H5 WUD sing 393 n n 
C12 H6 WUD sing 394 n n 
C13 H7 WUD sing 395 n n 
C15 H8 WUD sing 396 n n 
C16 H9 WUD sing 397 n n 
C18 H10 WUD sing 398 n n 
C18 H11 WUD sing 399 n n 
C18 H12 WUD sing 400 n n 
C19 H13 WUD sing 401 n n 
C19 H14 WUD sing 402 n n 
C19 H15 WUD sing 403 n n 
C20 H16 WUD sing 404 n n 
C20 H17 WUD sing 405 n n 
C21 H18 WUD sing 406 n n 
C22 H19 WUD sing 407 n n 
C22 H20 WUD sing 408 n n 
C22 H21 WUD sing 409 n n 
C23 H22 WUD sing 410 n n 
C23 H23 WUD sing 411 n n 
C24 H24 WUD sing 412 n n 
C24 H25 WUD sing 413 n n 
C24 H26 WUD sing 414 n n 
C3 H27 WUD sing 415 n n 
C3 H28 WUD sing 416 n n 
C3 H29 WUD sing 417 n n 
C5 H30 WUD sing 418 n n 
C7 H32 WUD sing 419 n n 
O3 H34 WUD sing 420 n n 
O4 H35 WUD sing 421 n n 
O5 H36 WUD sing 422 n n 
#
_atom_sites.entry_id                     7KO6 
_atom_sites.fract_transf_matrix[1][1]    0.029083 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004291 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.038597 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017509 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 2 ZN A 1 302 2 ZN ZN . 
D 3 WUD A 1 303 1 WUD ing . 
E 4 XP5 A 1 304 1 XP5 LIG . 
F 5 HOH A 1 401 56 HOH HOH . 
F 5 HOH A 2 402 1 HOH HOH . 
F 5 HOH A 3 403 59 HOH HOH . 
F 5 HOH A 4 404 60 HOH HOH . 
F 5 HOH A 5 405 36 HOH HOH . 
F 5 HOH A 6 406 49 HOH HOH . 
F 5 HOH A 7 407 52 HOH HOH . 
F 5 HOH A 8 408 3 HOH HOH . 
F 5 HOH A 9 409 57 HOH HOH . 
F 5 HOH A 10 410 10 HOH HOH . 
F 5 HOH A 11 411 13 HOH HOH . 
F 5 HOH A 12 412 27 HOH HOH . 
F 5 HOH A 13 413 9 HOH HOH . 
F 5 HOH A 14 414 28 HOH HOH . 
F 5 HOH A 15 415 18 HOH HOH . 
F 5 HOH A 16 416 15 HOH HOH . 
F 5 HOH A 17 417 12 HOH HOH . 
F 5 HOH A 18 418 11 HOH HOH . 
F 5 HOH A 19 419 4 HOH HOH . 
F 5 HOH A 20 420 35 HOH HOH . 
F 5 HOH A 21 421 48 HOH HOH . 
F 5 HOH A 22 422 6 HOH HOH . 
F 5 HOH A 23 423 58 HOH HOH . 
F 5 HOH A 24 424 17 HOH HOH . 
F 5 HOH A 25 425 2 HOH HOH . 
F 5 HOH A 26 426 53 HOH HOH . 
F 5 HOH A 27 427 8 HOH HOH . 
F 5 HOH A 28 428 23 HOH HOH . 
F 5 HOH A 29 429 51 HOH HOH . 
F 5 HOH A 30 430 14 HOH HOH . 
F 5 HOH A 31 431 21 HOH HOH . 
F 5 HOH A 32 432 5 HOH HOH . 
F 5 HOH A 33 433 37 HOH HOH . 
F 5 HOH A 34 434 19 HOH HOH . 
F 5 HOH A 35 435 54 HOH HOH . 
F 5 HOH A 36 436 26 HOH HOH . 
F 5 HOH A 37 437 29 HOH HOH . 
F 5 HOH A 38 438 20 HOH HOH . 
F 5 HOH A 39 439 24 HOH HOH . 
F 5 HOH A 40 440 25 HOH HOH . 
F 5 HOH A 41 441 7 HOH HOH . 
F 5 HOH A 42 442 61 HOH HOH . 
F 5 HOH A 43 443 40 HOH HOH . 
F 5 HOH A 44 444 55 HOH HOH . 
F 5 HOH A 45 445 31 HOH HOH . 
F 5 HOH A 46 446 32 HOH HOH . 
F 5 HOH A 47 447 50 HOH HOH . 
F 5 HOH A 48 448 47 HOH HOH . 
F 5 HOH A 49 449 33 HOH HOH . 
F 5 HOH A 50 450 44 HOH HOH . 
F 5 HOH A 51 451 39 HOH HOH . 
F 5 HOH A 52 452 42 HOH HOH . 
F 5 HOH A 53 453 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C WUD . . . D 3 -8.313 -5.586 1.83 1 30.66 ? C WUD 303 A 1 
HETATM 2 O O WUD . . . D 3 -5.68 -4.328 2.322 1 18.12 ? O WUD 303 A 1 
HETATM 3 C C1 WUD . . . D 3 -7.926 -5.004 0.489 1 27.77 ? C1 WUD 303 A 1 
HETATM 4 C C10 WUD . . . D 3 -3.777 -0.749 3.262 1 13.25 ? C10 WUD 303 A 1 
HETATM 5 C C11 WUD . . . D 3 -4.066 0.482 4.087 1 13.73 ? C11 WUD 303 A 1 
HETATM 6 C C12 WUD . . . D 3 -4.655 1.627 3.669 1 15.82 ? C12 WUD 303 A 1 
HETATM 7 C C13 WUD . . . D 3 -5.13 1.71 2.249 1 16.43 ? C13 WUD 303 A 1 
HETATM 8 C C14 WUD . . . D 3 -3.932 1.372 1.42 1 22 ? C14 WUD 303 A 1 
HETATM 9 C C15 WUD . . . D 3 -5.777 2.986 1.711 1 23.75 ? C15 WUD 303 A 1 
HETATM 10 C C16 WUD . . . D 3 -6.375 2.542 0.357 1 24.51 ? C16 WUD 303 A 1 
HETATM 11 C C17 WUD . . . D 3 -7.294 2.969 1.512 1 18.08 ? C17 WUD 303 A 1 
HETATM 12 C C18 WUD . . . D 3 -8.024 1.913 2.351 1 18.19 ? C18 WUD 303 A 1 
HETATM 13 C C19 WUD . . . D 3 -7.95 4.331 1.351 1 23.02 ? C19 WUD 303 A 1 
HETATM 14 C C2 WUD . . . D 3 -6.802 -4.293 0.231 1 22.59 ? C2 WUD 303 A 1 
HETATM 15 C C20 WUD . . . D 3 -6.465 1.019 0.104 1 17.39 ? C20 WUD 303 A 1 
HETATM 16 C C21 WUD . . . D 3 -5.185 0.242 -0.302 1 14.2 ? C21 WUD 303 A 1 
HETATM 17 C C22 WUD . . . D 3 -4.527 0.891 -1.522 1 16.91 ? C22 WUD 303 A 1 
HETATM 18 C C23 WUD . . . D 3 -3.591 0.412 5.527 1 13.47 ? C23 WUD 303 A 1 
HETATM 19 C C24 WUD . . . D 3 -1.756 -2.845 0.02 1 13.04 ? C24 WUD 303 A 1 
HETATM 20 C C3 WUD . . . D 3 -6.545 -3.767 -1.142 1 28.32 ? C3 WUD 303 A 1 
HETATM 21 C C4 WUD . . . D 3 -5.762 -3.929 1.169 1 21.78 ? C4 WUD 303 A 1 
HETATM 22 C C5 WUD . . . D 3 -3.899 -2.314 1.42 1 19.92 ? C5 WUD 303 A 1 
HETATM 23 C C6 WUD . . . D 3 -2.802 -1.874 0.508 1 19.31 ? C6 WUD 303 A 1 
HETATM 24 C C7 WUD . . . D 3 -2.866 -0.572 0.193 1 16.63 ? C7 WUD 303 A 1 
HETATM 25 C C8 WUD . . . D 3 -4.117 0.032 0.801 1 19.43 ? C8 WUD 303 A 1 
HETATM 26 C C9 WUD . . . D 3 -4.467 -0.986 1.905 1 18.98 ? C9 WUD 303 A 1 
HETATM 27 O O1 WUD . . . D 3 -4.823 -2.987 0.593 1 20.42 ? O1 WUD 303 A 1 
HETATM 28 O O2 WUD . . . D 3 -2.944 2.108 1.3 1 18.95 ? O2 WUD 303 A 1 
HETATM 29 O O3 WUD . . . D 3 -2.181 0.181 5.556 1 11.91 ? O3 WUD 303 A 1 
HETATM 30 O O4 WUD . . . D 3 -4.161 -1.854 4.073 1 12.94 ? O4 WUD 303 A 1 
HETATM 31 O O5 WUD . . . D 3 -5.868 -1.217 2.094 1 16.38 ? O5 WUD 303 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           56 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           1098 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#