data_7KOA # _model_server_result.job_id WLHXCigtC9PAMRo-Uztt5g _model_server_result.datetime_utc '2024-11-21 09:18:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7koa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7KOA # _exptl.entry_id 7KOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KOA _cell.length_a 170.86 _cell.length_b 170.86 _cell.length_c 52.797 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 77 B CYS 74 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 B SG CYS 80 B CYS 77 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 B NE2 HIS 86 B HIS 83 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 B SG CYS 93 B CYS 90 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 B SG CYS 120 B CYS 117 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 B SG CYS 123 B CYS 120 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc7 B SG CYS 131 B CYS 128 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc8 B SG CYS 133 B CYS 130 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 363 n n N HN1 SAM sing 364 n n N HN2 SAM sing 365 n n CA C SAM sing 366 n n CA CB SAM sing 367 n n CA HA SAM sing 368 n n C O SAM doub 369 n n C OXT SAM sing 370 n n CB CG SAM sing 371 n n CB HB1 SAM sing 372 n n CB HB2 SAM sing 373 n n CG SD SAM sing 374 n n CG HG1 SAM sing 375 n n CG HG2 SAM sing 376 n n SD CE SAM sing 377 n n SD C5' SAM sing 378 n n CE HE1 SAM sing 379 n n CE HE2 SAM sing 380 n n CE HE3 SAM sing 381 n n C5' C4' SAM sing 382 n n C5' "H5'1" SAM sing 383 n n C5' "H5'2" SAM sing 384 n n C4' O4' SAM sing 385 n n C4' C3' SAM sing 386 n n C4' H4' SAM sing 387 n n O4' C1' SAM sing 388 n n C3' O3' SAM sing 389 n n C3' C2' SAM sing 390 n n C3' H3' SAM sing 391 n n O3' HO3' SAM sing 392 n n C2' O2' SAM sing 393 n n C2' C1' SAM sing 394 n n C2' H2' SAM sing 395 n n O2' HO2' SAM sing 396 n n C1' N9 SAM sing 397 n n C1' H1' SAM sing 398 n n N9 C8 SAM sing 399 n y N9 C4 SAM sing 400 n y C8 N7 SAM doub 401 n y C8 H8 SAM sing 402 n n N7 C5 SAM sing 403 n y C5 C6 SAM sing 404 n y C5 C4 SAM doub 405 n y C6 N6 SAM sing 406 n n C6 N1 SAM doub 407 n y N6 HN61 SAM sing 408 n n N6 HN62 SAM sing 409 n n N1 C2 SAM sing 410 n y C2 N3 SAM doub 411 n y C2 H2 SAM sing 412 n n N3 C4 SAM sing 413 n y # _atom_sites.entry_id 7KOA _atom_sites.fract_transf_matrix[1][1] 0.005853 _atom_sites.fract_transf_matrix[1][2] 0.003379 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTA A 1 301 1 GTA GTA . D 4 SAM A 1 302 2 SAM SAM . E 3 GTA A 1 303 3 GTA GTA . F 5 ZN B 1 201 201 ZN ZN . G 5 ZN B 1 202 202 ZN ZN . H 6 HOH A 1 401 12 HOH HOH . H 6 HOH A 2 402 144 HOH HOH . H 6 HOH A 3 403 27 HOH HOH . H 6 HOH A 4 404 170 HOH HOH . H 6 HOH A 5 405 145 HOH HOH . H 6 HOH A 6 406 148 HOH HOH . H 6 HOH A 7 407 167 HOH HOH . H 6 HOH A 8 408 43 HOH HOH . H 6 HOH A 9 409 133 HOH HOH . H 6 HOH A 10 410 69 HOH HOH . H 6 HOH A 11 411 60 HOH HOH . H 6 HOH A 12 412 18 HOH HOH . H 6 HOH A 13 413 8 HOH HOH . H 6 HOH A 14 414 25 HOH HOH . H 6 HOH A 15 415 137 HOH HOH . H 6 HOH A 16 416 154 HOH HOH . H 6 HOH A 17 417 130 HOH HOH . H 6 HOH A 18 418 40 HOH HOH . H 6 HOH A 19 419 126 HOH HOH . H 6 HOH A 20 420 95 HOH HOH . H 6 HOH A 21 421 127 HOH HOH . H 6 HOH A 22 422 13 HOH HOH . H 6 HOH A 23 423 9 HOH HOH . H 6 HOH A 24 424 16 HOH HOH . H 6 HOH A 25 425 109 HOH HOH . H 6 HOH A 26 426 52 HOH HOH . H 6 HOH A 27 427 37 HOH HOH . H 6 HOH A 28 428 110 HOH HOH . H 6 HOH A 29 429 33 HOH HOH . H 6 HOH A 30 430 22 HOH HOH . H 6 HOH A 31 431 10 HOH HOH . H 6 HOH A 32 432 86 HOH HOH . H 6 HOH A 33 433 90 HOH HOH . H 6 HOH A 34 434 125 HOH HOH . H 6 HOH A 35 435 128 HOH HOH . H 6 HOH A 36 436 203 HOH HOH . H 6 HOH A 37 437 123 HOH HOH . H 6 HOH A 38 438 32 HOH HOH . H 6 HOH A 39 439 17 HOH HOH . H 6 HOH A 40 440 6 HOH HOH . H 6 HOH A 41 441 172 HOH HOH . H 6 HOH A 42 442 24 HOH HOH . H 6 HOH A 43 443 151 HOH HOH . H 6 HOH A 44 444 64 HOH HOH . H 6 HOH A 45 445 30 HOH HOH . H 6 HOH A 46 446 28 HOH HOH . H 6 HOH A 47 447 45 HOH HOH . H 6 HOH A 48 448 26 HOH HOH . H 6 HOH A 49 449 85 HOH HOH . H 6 HOH A 50 450 62 HOH HOH . H 6 HOH A 51 451 63 HOH HOH . H 6 HOH A 52 452 48 HOH HOH . H 6 HOH A 53 453 100 HOH HOH . H 6 HOH A 54 454 138 HOH HOH . H 6 HOH A 55 455 39 HOH HOH . H 6 HOH A 56 456 147 HOH HOH . H 6 HOH A 57 457 70 HOH HOH . H 6 HOH A 58 458 46 HOH HOH . H 6 HOH A 59 459 97 HOH HOH . H 6 HOH A 60 460 165 HOH HOH . H 6 HOH A 61 461 61 HOH HOH . H 6 HOH A 62 462 73 HOH HOH . H 6 HOH A 63 463 186 HOH HOH . H 6 HOH A 64 464 87 HOH HOH . H 6 HOH A 65 465 54 HOH HOH . H 6 HOH A 66 466 3 HOH HOH . H 6 HOH A 67 467 159 HOH HOH . H 6 HOH A 68 468 91 HOH HOH . H 6 HOH A 69 469 11 HOH HOH . H 6 HOH A 70 470 58 HOH HOH . H 6 HOH A 71 471 53 HOH HOH . H 6 HOH A 72 472 111 HOH HOH . H 6 HOH A 73 473 114 HOH HOH . H 6 HOH A 74 474 113 HOH HOH . H 6 HOH A 75 475 202 HOH HOH . H 6 HOH A 76 476 41 HOH HOH . H 6 HOH A 77 477 168 HOH HOH . H 6 HOH A 78 478 83 HOH HOH . H 6 HOH A 79 479 99 HOH HOH . H 6 HOH A 80 480 38 HOH HOH . H 6 HOH A 81 481 23 HOH HOH . H 6 HOH A 82 482 155 HOH HOH . H 6 HOH A 83 483 193 HOH HOH . H 6 HOH A 84 484 118 HOH HOH . H 6 HOH A 85 485 103 HOH HOH . H 6 HOH A 86 486 36 HOH HOH . H 6 HOH A 87 487 76 HOH HOH . H 6 HOH A 88 488 14 HOH HOH . H 6 HOH A 89 489 101 HOH HOH . H 6 HOH A 90 490 166 HOH HOH . H 6 HOH A 91 491 160 HOH HOH . H 6 HOH A 92 492 152 HOH HOH . H 6 HOH A 93 493 191 HOH HOH . H 6 HOH A 94 494 156 HOH HOH . H 6 HOH A 95 495 105 HOH HOH . H 6 HOH A 96 496 93 HOH HOH . H 6 HOH A 97 497 21 HOH HOH . H 6 HOH A 98 498 200 HOH HOH . H 6 HOH A 99 499 161 HOH HOH . H 6 HOH A 100 500 98 HOH HOH . H 6 HOH A 101 501 116 HOH HOH . H 6 HOH A 102 502 82 HOH HOH . H 6 HOH A 103 503 7 HOH HOH . H 6 HOH A 104 504 117 HOH HOH . H 6 HOH A 105 505 56 HOH HOH . H 6 HOH A 106 506 89 HOH HOH . H 6 HOH A 107 507 57 HOH HOH . H 6 HOH A 108 508 194 HOH HOH . H 6 HOH A 109 509 35 HOH HOH . H 6 HOH A 110 510 55 HOH HOH . H 6 HOH A 111 511 29 HOH HOH . H 6 HOH A 112 512 176 HOH HOH . H 6 HOH A 113 513 150 HOH HOH . H 6 HOH A 114 514 107 HOH HOH . H 6 HOH A 115 515 66 HOH HOH . H 6 HOH A 116 516 79 HOH HOH . H 6 HOH A 117 517 112 HOH HOH . H 6 HOH A 118 518 44 HOH HOH . H 6 HOH A 119 519 1 HOH HOH . H 6 HOH A 120 520 77 HOH HOH . H 6 HOH A 121 521 140 HOH HOH . H 6 HOH A 122 522 49 HOH HOH . H 6 HOH A 123 523 2 HOH HOH . H 6 HOH A 124 524 19 HOH HOH . H 6 HOH A 125 525 75 HOH HOH . H 6 HOH A 126 526 129 HOH HOH . H 6 HOH A 127 527 190 HOH HOH . H 6 HOH A 128 528 189 HOH HOH . H 6 HOH A 129 529 121 HOH HOH . H 6 HOH A 130 530 171 HOH HOH . H 6 HOH A 131 531 120 HOH HOH . H 6 HOH A 132 532 181 HOH HOH . H 6 HOH A 133 533 42 HOH HOH . H 6 HOH A 134 534 135 HOH HOH . H 6 HOH A 135 535 175 HOH HOH . H 6 HOH A 136 536 119 HOH HOH . H 6 HOH A 137 537 34 HOH HOH . H 6 HOH A 138 538 115 HOH HOH . H 6 HOH A 139 539 141 HOH HOH . H 6 HOH A 140 540 201 HOH HOH . H 6 HOH A 141 541 47 HOH HOH . H 6 HOH A 142 542 84 HOH HOH . H 6 HOH A 143 543 204 HOH HOH . I 6 HOH B 1 301 94 HOH HOH . I 6 HOH B 2 302 153 HOH HOH . I 6 HOH B 3 303 71 HOH HOH . I 6 HOH B 4 304 142 HOH HOH . I 6 HOH B 5 305 92 HOH HOH . I 6 HOH B 6 306 59 HOH HOH . I 6 HOH B 7 307 65 HOH HOH . I 6 HOH B 8 308 198 HOH HOH . I 6 HOH B 9 309 183 HOH HOH . I 6 HOH B 10 310 88 HOH HOH . I 6 HOH B 11 311 20 HOH HOH . I 6 HOH B 12 312 104 HOH HOH . I 6 HOH B 13 313 78 HOH HOH . I 6 HOH B 14 314 67 HOH HOH . I 6 HOH B 15 315 122 HOH HOH . I 6 HOH B 16 316 185 HOH HOH . I 6 HOH B 17 317 72 HOH HOH . I 6 HOH B 18 318 146 HOH HOH . I 6 HOH B 19 319 132 HOH HOH . I 6 HOH B 20 320 134 HOH HOH . I 6 HOH B 21 321 68 HOH HOH . I 6 HOH B 22 322 50 HOH HOH . I 6 HOH B 23 323 158 HOH HOH . I 6 HOH B 24 324 162 HOH HOH . I 6 HOH B 25 325 157 HOH HOH . I 6 HOH B 26 326 31 HOH HOH . I 6 HOH B 27 327 188 HOH HOH . I 6 HOH B 28 328 15 HOH HOH . I 6 HOH B 29 329 80 HOH HOH . I 6 HOH B 30 330 187 HOH HOH . I 6 HOH B 31 331 143 HOH HOH . I 6 HOH B 32 332 108 HOH HOH . I 6 HOH B 33 333 139 HOH HOH . I 6 HOH B 34 334 136 HOH HOH . I 6 HOH B 35 335 96 HOH HOH . I 6 HOH B 36 336 106 HOH HOH . I 6 HOH B 37 337 102 HOH HOH . I 6 HOH B 38 338 164 HOH HOH . I 6 HOH B 39 339 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 4 87.618 -19.9 24.015 1 20.86 ? N SAM 302 A 1 HETATM 2 C CA SAM . . . D 4 88.884 -19.268 24.494 1 20.42 ? CA SAM 302 A 1 HETATM 3 C C SAM . . . D 4 90.075 -20.071 23.95 1 19.74 ? C SAM 302 A 1 HETATM 4 O O SAM . . . D 4 89.945 -20.713 22.901 1 18.22 ? O SAM 302 A 1 HETATM 5 O OXT SAM . . . D 4 91.175 -20.098 24.518 1 19.41 ? OXT SAM 302 A 1 HETATM 6 C CB SAM . . . D 4 88.924 -19.212 26.027 1 20.33 ? CB SAM 302 A 1 HETATM 7 C CG SAM . . . D 4 87.707 -18.534 26.65 1 21.22 ? CG SAM 302 A 1 HETATM 8 S SD SAM . . . D 4 87.909 -18.352 28.436 1 22.1 ? SD SAM 302 A 1 HETATM 9 C CE SAM . . . D 4 87.581 -20.014 28.994 1 23.3 ? CE SAM 302 A 1 HETATM 10 C C5' SAM . . . D 4 86.343 -17.547 28.842 1 23.92 ? C5' SAM 302 A 1 HETATM 11 C C4' SAM . . . D 4 86.236 -16.137 28.305 1 23.69 ? C4' SAM 302 A 1 HETATM 12 O O4' SAM . . . D 4 84.963 -15.576 28.684 1 25.04 ? O4' SAM 302 A 1 HETATM 13 C C3' SAM . . . D 4 87.282 -15.145 28.826 1 23.58 ? C3' SAM 302 A 1 HETATM 14 O O3' SAM . . . D 4 88.159 -14.765 27.773 1 23.55 ? O3' SAM 302 A 1 HETATM 15 C C2' SAM . . . D 4 86.462 -13.943 29.318 1 24.2 ? C2' SAM 302 A 1 HETATM 16 O O2' SAM . . . D 4 87.004 -12.707 28.911 1 24.89 ? O2' SAM 302 A 1 HETATM 17 C C1' SAM . . . D 4 85.121 -14.183 28.639 1 25.45 ? C1' SAM 302 A 1 HETATM 18 N N9 SAM . . . D 4 83.985 -13.535 29.281 1 25.91 ? N9 SAM 302 A 1 HETATM 19 C C8 SAM . . . D 4 83.561 -13.685 30.575 1 26.64 ? C8 SAM 302 A 1 HETATM 20 N N7 SAM . . . D 4 82.509 -12.962 30.864 1 27.84 ? N7 SAM 302 A 1 HETATM 21 C C5 SAM . . . D 4 82.216 -12.292 29.686 1 29.36 ? C5 SAM 302 A 1 HETATM 22 C C6 SAM . . . D 4 81.205 -11.371 29.343 1 31.17 ? C6 SAM 302 A 1 HETATM 23 N N6 SAM . . . D 4 80.268 -10.951 30.188 1 33.14 ? N6 SAM 302 A 1 HETATM 24 N N1 SAM . . . D 4 81.195 -10.895 28.075 1 31.37 ? N1 SAM 302 A 1 HETATM 25 C C2 SAM . . . D 4 82.142 -11.323 27.228 1 33.25 ? C2 SAM 302 A 1 HETATM 26 N N3 SAM . . . D 4 83.137 -12.182 27.438 1 30.26 ? N3 SAM 302 A 1 HETATM 27 C C4 SAM . . . D 4 83.121 -12.639 28.701 1 28 ? C4 SAM 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #