data_7KOE
#
_model_server_result.job_id            uhRvI2PHjY-56k3pippqrg 
_model_server_result.datetime_utc      '2024-11-21 14:12:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7koe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":502}' 
#
_entry.id    7KOE 
#
_exptl.entry_id    7KOE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              648.999 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            MENAQUINONE-7 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KOE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KOE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D SG CYS 38 D CYS 476 1_555 N FE3 SF4 . D SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc2 D OD1 ASN 75 D ASN 513 1_555 N FE4 SF4 . D SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc3 H SG CYS 38 H CYS 476 1_555 T FE3 SF4 . H SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc4 H OD1 ASN 75 H ASN 513 1_555 T FE4 SF4 . H SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
#
_chem_comp.formula           'C46 H64 O2' 
_chem_comp.formula_weight    648.999 
_chem_comp.id                MQ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              MENAQUINONE-7 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MQ7 doub 326 n n 
C1 C2 MQ7 sing 327 n n 
C1 C10 MQ7 sing 328 n n 
C2 C2M MQ7 sing 329 n n 
C2 C3 MQ7 doub 330 n n 
C2M H2M1 MQ7 sing 331 n n 
C2M H2M2 MQ7 sing 332 n n 
C2M H2M3 MQ7 sing 333 n n 
C3 C4 MQ7 sing 334 n n 
C3 C11 MQ7 sing 335 n n 
C4 O4 MQ7 doub 336 n n 
C4 C5 MQ7 sing 337 n n 
C5 C6 MQ7 doub 338 n y 
C5 C10 MQ7 sing 339 n y 
C6 C7 MQ7 sing 340 n y 
C6 H6 MQ7 sing 341 n n 
C7 C8 MQ7 doub 342 n y 
C7 H7 MQ7 sing 343 n n 
C8 C9 MQ7 sing 344 n y 
C8 H8 MQ7 sing 345 n n 
C9 C10 MQ7 doub 346 n y 
C9 H9 MQ7 sing 347 n n 
C11 C12 MQ7 sing 348 n n 
C11 H111 MQ7 sing 349 n n 
C11 H112 MQ7 sing 350 n n 
C12 C13 MQ7 doub 351 e n 
C12 H12 MQ7 sing 352 n n 
C13 C14 MQ7 sing 353 n n 
C13 C15 MQ7 sing 354 n n 
C14 H141 MQ7 sing 355 n n 
C14 H142 MQ7 sing 356 n n 
C14 H143 MQ7 sing 357 n n 
C15 C16 MQ7 sing 358 n n 
C15 H151 MQ7 sing 359 n n 
C15 H152 MQ7 sing 360 n n 
C16 C17 MQ7 sing 361 n n 
C16 H161 MQ7 sing 362 n n 
C16 H162 MQ7 sing 363 n n 
C17 C18 MQ7 doub 364 e n 
C17 H17 MQ7 sing 365 n n 
C18 C19 MQ7 sing 366 n n 
C18 C20 MQ7 sing 367 n n 
C19 H191 MQ7 sing 368 n n 
C19 H192 MQ7 sing 369 n n 
C19 H193 MQ7 sing 370 n n 
C20 C21 MQ7 sing 371 n n 
C20 H201 MQ7 sing 372 n n 
C20 H202 MQ7 sing 373 n n 
C21 C22 MQ7 sing 374 n n 
C21 H211 MQ7 sing 375 n n 
C21 H212 MQ7 sing 376 n n 
C22 C23 MQ7 doub 377 e n 
C22 H22 MQ7 sing 378 n n 
C23 C24 MQ7 sing 379 n n 
C23 C25 MQ7 sing 380 n n 
C24 H241 MQ7 sing 381 n n 
C24 H242 MQ7 sing 382 n n 
C24 H243 MQ7 sing 383 n n 
C25 C26 MQ7 sing 384 n n 
C25 H251 MQ7 sing 385 n n 
C25 H252 MQ7 sing 386 n n 
C26 C27 MQ7 sing 387 n n 
C26 H261 MQ7 sing 388 n n 
C26 H262 MQ7 sing 389 n n 
C27 C28 MQ7 doub 390 e n 
C27 H27 MQ7 sing 391 n n 
C28 C29 MQ7 sing 392 n n 
C28 C30 MQ7 sing 393 n n 
C29 H291 MQ7 sing 394 n n 
C29 H292 MQ7 sing 395 n n 
C29 H293 MQ7 sing 396 n n 
C30 C31 MQ7 sing 397 n n 
C30 H301 MQ7 sing 398 n n 
C30 H302 MQ7 sing 399 n n 
C31 C32 MQ7 sing 400 n n 
C31 H311 MQ7 sing 401 n n 
C31 H312 MQ7 sing 402 n n 
C32 C33 MQ7 doub 403 e n 
C32 H32 MQ7 sing 404 n n 
C33 C34 MQ7 sing 405 n n 
C33 C35 MQ7 sing 406 n n 
C34 H341 MQ7 sing 407 n n 
C34 H342 MQ7 sing 408 n n 
C34 H343 MQ7 sing 409 n n 
C35 C36 MQ7 sing 410 n n 
C35 H351 MQ7 sing 411 n n 
C35 H352 MQ7 sing 412 n n 
C36 C37 MQ7 sing 413 n n 
C36 H361 MQ7 sing 414 n n 
C36 H362 MQ7 sing 415 n n 
C37 C38 MQ7 doub 416 e n 
C37 H37 MQ7 sing 417 n n 
C38 C39 MQ7 sing 418 n n 
C38 C40 MQ7 sing 419 n n 
C39 H391 MQ7 sing 420 n n 
C39 H392 MQ7 sing 421 n n 
C39 H393 MQ7 sing 422 n n 
C40 C41 MQ7 sing 423 n n 
C40 H401 MQ7 sing 424 n n 
C40 H402 MQ7 sing 425 n n 
C41 C42 MQ7 sing 426 n n 
C41 H411 MQ7 sing 427 n n 
C41 H412 MQ7 sing 428 n n 
C42 C43 MQ7 doub 429 n n 
C42 H42 MQ7 sing 430 n n 
C43 C44 MQ7 sing 431 n n 
C43 C45 MQ7 sing 432 n n 
C44 H441 MQ7 sing 433 n n 
C44 H442 MQ7 sing 434 n n 
C44 H443 MQ7 sing 435 n n 
C45 H451 MQ7 sing 436 n n 
C45 H452 MQ7 sing 437 n n 
C45 H453 MQ7 sing 438 n n 
#
_atom_sites.entry_id                     7KOE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 FAD A 1 301 301 FAD FAD . 
J 5 FAD B 1 701 701 FAD FAD . 
K 5 FAD C 1 501 501 FAD FAD . 
L 6 MQ7 C 1 502 601 MQ7 MQ7 . 
M 7 SF4 D 1 601 601 SF4 SF4 . 
N 7 SF4 D 1 602 701 SF4 SF4 . 
O 5 FAD E 1 301 301 FAD FAD . 
P 5 FAD F 1 701 701 FAD FAD . 
Q 5 FAD G 1 501 501 FAD FAD . 
R 6 MQ7 G 1 502 601 MQ7 MQ7 . 
S 7 SF4 H 1 601 601 SF4 SF4 . 
T 7 SF4 H 1 602 701 SF4 SF4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MQ7 . . . R 6 162.839 175.999 186.222 1 30.8 ? C1 MQ7 502 G 1 
HETATM 2 O O1 MQ7 . . . R 6 164.13 175.671 186.573 1 30.8 ? O1 MQ7 502 G 1 
HETATM 3 C C2 MQ7 . . . R 6 162.538 176.213 184.894 1 30.8 ? C2 MQ7 502 G 1 
HETATM 4 C C2M MQ7 . . . R 6 163.628 176.082 183.891 1 30.8 ? C2M MQ7 502 G 1 
HETATM 5 C C3 MQ7 . . . R 6 161.213 176.551 184.499 1 30.8 ? C3 MQ7 502 G 1 
HETATM 6 C C4 MQ7 . . . R 6 160.291 176.65 185.53 1 30.8 ? C4 MQ7 502 G 1 
HETATM 7 O O4 MQ7 . . . R 6 159.001 176.981 185.206 1 30.8 ? O4 MQ7 502 G 1 
HETATM 8 C C5 MQ7 . . . R 6 160.58 176.434 186.908 1 30.8 ? C5 MQ7 502 G 1 
HETATM 9 C C6 MQ7 . . . R 6 159.594 176.548 187.921 1 30.8 ? C6 MQ7 502 G 1 
HETATM 10 C C7 MQ7 . . . R 6 159.902 176.331 189.236 1 30.8 ? C7 MQ7 502 G 1 
HETATM 11 C C8 MQ7 . . . R 6 161.226 175.99 189.603 1 30.8 ? C8 MQ7 502 G 1 
HETATM 12 C C9 MQ7 . . . R 6 162.198 175.879 188.643 1 30.8 ? C9 MQ7 502 G 1 
HETATM 13 C C10 MQ7 . . . R 6 161.894 176.097 187.273 1 30.8 ? C10 MQ7 502 G 1 
HETATM 14 C C11 MQ7 . . . R 6 160.855 176.792 183.043 1 30.8 ? C11 MQ7 502 G 1 
HETATM 15 C C12 MQ7 . . . R 6 159.836 175.846 182.341 1 30.8 ? C12 MQ7 502 G 1 
HETATM 16 C C13 MQ7 . . . R 6 159.811 175.836 180.789 1 30.8 ? C13 MQ7 502 G 1 
HETATM 17 C C14 MQ7 . . . R 6 158.368 176.02 180.32 1 30.8 ? C14 MQ7 502 G 1 
HETATM 18 C C15 MQ7 . . . R 6 160.396 174.525 180.164 1 30.8 ? C15 MQ7 502 G 1 
HETATM 19 C C16 MQ7 . . . R 6 159.695 173.194 180.511 1 30.8 ? C16 MQ7 502 G 1 
HETATM 20 C C17 MQ7 . . . R 6 160.381 172.36 181.63 1 30.8 ? C17 MQ7 502 G 1 
HETATM 21 C C18 MQ7 . . . R 6 160.587 170.835 181.392 1 30.8 ? C18 MQ7 502 G 1 
HETATM 22 C C19 MQ7 . . . R 6 159.259 170.149 181.158 1 30.8 ? C19 MQ7 502 G 1 
HETATM 23 C C20 MQ7 . . . R 6 161.356 170.144 182.555 1 30.8 ? C20 MQ7 502 G 1 
HETATM 24 C C21 MQ7 . . . R 6 160.538 169.679 183.78 1 30.8 ? C21 MQ7 502 G 1 
HETATM 25 C C22 MQ7 . . . R 6 160.257 170.735 184.872 1 30.8 ? C22 MQ7 502 G 1 
HETATM 26 C C23 MQ7 . . . R 6 161.307 170.845 185.995 1 30.8 ? C23 MQ7 502 G 1 
HETATM 27 C C24 MQ7 . . . R 6 161.851 169.464 186.383 1 30.8 ? C24 MQ7 502 G 1 
HETATM 28 C C25 MQ7 . . . R 6 160.777 171.543 187.267 1 30.8 ? C25 MQ7 502 G 1 
HETATM 29 C C26 MQ7 . . . R 6 159.271 171.442 187.516 1 30.8 ? C26 MQ7 502 G 1 
HETATM 30 C C27 MQ7 . . . R 6 158.867 170.677 188.781 1 30.8 ? C27 MQ7 502 G 1 
HETATM 31 C C28 MQ7 . . . R 6 157.729 169.628 188.685 1 30.8 ? C28 MQ7 502 G 1 
HETATM 32 C C29 MQ7 . . . R 6 156.685 170.019 187.659 1 30.8 ? C29 MQ7 502 G 1 
HETATM 33 C C30 MQ7 . . . R 6 157.089 169.252 190.039 1 30.8 ? C30 MQ7 502 G 1 
HETATM 34 C C31 MQ7 . . . R 6 156.646 167.79 190.254 1 30.8 ? C31 MQ7 502 G 1 
HETATM 35 C C32 MQ7 . . . R 6 157.638 166.71 189.792 1 30.8 ? C32 MQ7 502 G 1 
HETATM 36 C C33 MQ7 . . . R 6 157.02 165.608 188.889 1 30.8 ? C33 MQ7 502 G 1 
HETATM 37 C C34 MQ7 . . . R 6 156.035 164.763 189.713 1 30.8 ? C34 MQ7 502 G 1 
HETATM 38 C C35 MQ7 . . . R 6 158.093 164.686 188.263 1 30.8 ? C35 MQ7 502 G 1 
HETATM 39 C C36 MQ7 . . . R 6 158.236 164.802 186.73 1 30.8 ? C36 MQ7 502 G 1 
HETATM 40 C C37 MQ7 . . . R 6 159.595 165.34 186.232 1 30.8 ? C37 MQ7 502 G 1 
HETATM 41 C C38 MQ7 . . . R 6 160.847 164.609 186.757 1 30.8 ? C38 MQ7 502 G 1 
HETATM 42 C C39 MQ7 . . . R 6 162.109 165.259 186.203 1 30.8 ? C39 MQ7 502 G 1 
HETATM 43 C C40 MQ7 . . . R 6 160.851 163.081 186.472 1 30.8 ? C40 MQ7 502 G 1 
HETATM 44 C C41 MQ7 . . . R 6 160.878 162.177 187.706 1 30.8 ? C41 MQ7 502 G 1 
HETATM 45 C C42 MQ7 . . . R 6 160.366 160.733 187.506 1 30.8 ? C42 MQ7 502 G 1 
HETATM 46 C C43 MQ7 . . . R 6 159.219 160.304 188.447 1 30.8 ? C43 MQ7 502 G 1 
HETATM 47 C C44 MQ7 . . . R 6 159.104 158.78 188.555 1 30.8 ? C44 MQ7 502 G 1 
HETATM 48 C C45 MQ7 . . . R 6 159.387 160.898 189.842 1 30.8 ? C45 MQ7 502 G 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#