data_7KOE # _model_server_result.job_id p3vVANRMWs_T4t93rn3fAg _model_server_result.datetime_utc '2024-11-21 13:56:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7koe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":701}' # _entry.id 7KOE # _exptl.entry_id 7KOE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KOE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D SG CYS 38 D CYS 476 1_555 N FE3 SF4 . D SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 D OD1 ASN 75 D ASN 513 1_555 N FE4 SF4 . D SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc3 H SG CYS 38 H CYS 476 1_555 T FE3 SF4 . H SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 H OD1 ASN 75 H ASN 513 1_555 T FE4 SF4 . H SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 7KOE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 FAD A 1 301 301 FAD FAD . J 5 FAD B 1 701 701 FAD FAD . K 5 FAD C 1 501 501 FAD FAD . L 6 MQ7 C 1 502 601 MQ7 MQ7 . M 7 SF4 D 1 601 601 SF4 SF4 . N 7 SF4 D 1 602 701 SF4 SF4 . O 5 FAD E 1 301 301 FAD FAD . P 5 FAD F 1 701 701 FAD FAD . Q 5 FAD G 1 501 501 FAD FAD . R 6 MQ7 G 1 502 601 MQ7 MQ7 . S 7 SF4 H 1 601 601 SF4 SF4 . T 7 SF4 H 1 602 701 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . J 5 143.838 125.547 161.262 1 32.97 ? PA FAD 701 B 1 HETATM 2 O O1A FAD . . . J 5 143.431 125.101 162.61 1 32.97 ? O1A FAD 701 B 1 HETATM 3 O O2A FAD . . . J 5 144.533 126.899 161.252 1 32.97 ? O2A FAD 701 B 1 HETATM 4 O O5B FAD . . . J 5 142.634 125.504 160.307 1 32.97 ? O5B FAD 701 B 1 HETATM 5 C C5B FAD . . . J 5 141.354 125.005 160.743 1 32.97 ? C5B FAD 701 B 1 HETATM 6 C C4B FAD . . . J 5 140.285 125.59 159.86 1 32.97 ? C4B FAD 701 B 1 HETATM 7 O O4B FAD . . . J 5 139.311 124.57 159.542 1 32.97 ? O4B FAD 701 B 1 HETATM 8 C C3B FAD . . . J 5 139.508 126.756 160.469 1 32.97 ? C3B FAD 701 B 1 HETATM 9 O O3B FAD . . . J 5 139.306 127.784 159.507 1 32.97 ? O3B FAD 701 B 1 HETATM 10 C C2B FAD . . . J 5 138.191 126.104 160.895 1 32.97 ? C2B FAD 701 B 1 HETATM 11 O O2B FAD . . . J 5 137.109 127.025 160.878 1 32.97 ? O2B FAD 701 B 1 HETATM 12 C C1B FAD . . . J 5 138.019 125.068 159.792 1 32.97 ? C1B FAD 701 B 1 HETATM 13 N N9A FAD . . . J 5 137.148 123.953 160.142 1 32.97 ? N9A FAD 701 B 1 HETATM 14 C C8A FAD . . . J 5 136.927 123.435 161.39 1 32.97 ? C8A FAD 701 B 1 HETATM 15 N N7A FAD . . . J 5 136.084 122.431 161.41 1 32.97 ? N7A FAD 701 B 1 HETATM 16 C C5A FAD . . . J 5 135.723 122.28 160.08 1 32.97 ? C5A FAD 701 B 1 HETATM 17 C C6A FAD . . . J 5 134.854 121.385 159.426 1 32.97 ? C6A FAD 701 B 1 HETATM 18 N N6A FAD . . . J 5 134.16 120.431 160.053 1 32.97 ? N6A FAD 701 B 1 HETATM 19 N N1A FAD . . . J 5 134.72 121.506 158.087 1 32.97 ? N1A FAD 701 B 1 HETATM 20 C C2A FAD . . . J 5 135.411 122.456 157.454 1 32.97 ? C2A FAD 701 B 1 HETATM 21 N N3A FAD . . . J 5 136.259 123.351 157.963 1 32.97 ? N3A FAD 701 B 1 HETATM 22 C C4A FAD . . . J 5 136.37 123.212 159.289 1 32.97 ? C4A FAD 701 B 1 HETATM 23 N N1 FAD . . . J 5 151.541 125.053 157.1 1 32.97 ? N1 FAD 701 B 1 HETATM 24 C C2 FAD . . . J 5 151.332 124.368 155.944 1 32.97 ? C2 FAD 701 B 1 HETATM 25 O O2 FAD . . . J 5 150.221 123.938 155.653 1 32.97 ? O2 FAD 701 B 1 HETATM 26 N N3 FAD . . . J 5 152.372 124.159 155.073 1 32.97 ? N3 FAD 701 B 1 HETATM 27 C C4 FAD . . . J 5 153.654 124.579 155.244 1 32.97 ? C4 FAD 701 B 1 HETATM 28 O O4 FAD . . . J 5 154.508 124.33 154.397 1 32.97 ? O4 FAD 701 B 1 HETATM 29 C C4X FAD . . . J 5 153.875 125.294 156.477 1 32.97 ? C4X FAD 701 B 1 HETATM 30 N N5 FAD . . . J 5 155.058 125.723 156.713 1 32.97 ? N5 FAD 701 B 1 HETATM 31 C C5X FAD . . . J 5 155.279 126.407 157.881 1 32.97 ? C5X FAD 701 B 1 HETATM 32 C C6 FAD . . . J 5 156.559 126.872 158.142 1 32.97 ? C6 FAD 701 B 1 HETATM 33 C C7 FAD . . . J 5 156.837 127.571 159.307 1 32.97 ? C7 FAD 701 B 1 HETATM 34 C C7M FAD . . . J 5 158.238 128.058 159.554 1 32.97 ? C7M FAD 701 B 1 HETATM 35 C C8 FAD . . . J 5 155.811 127.814 160.232 1 32.97 ? C8 FAD 701 B 1 HETATM 36 C C8M FAD . . . J 5 156.072 128.575 161.494 1 32.97 ? C8M FAD 701 B 1 HETATM 37 C C9 FAD . . . J 5 154.527 127.351 159.974 1 32.97 ? C9 FAD 701 B 1 HETATM 38 C C9A FAD . . . J 5 154.259 126.648 158.809 1 32.97 ? C9A FAD 701 B 1 HETATM 39 N N10 FAD . . . J 5 152.969 126.185 158.5 1 32.97 ? N10 FAD 701 B 1 HETATM 40 C C10 FAD . . . J 5 152.747 125.481 157.347 1 32.97 ? C10 FAD 701 B 1 HETATM 41 C C1' FAD . . . J 5 151.864 126.361 159.453 1 32.97 ? C1' FAD 701 B 1 HETATM 42 C C2' FAD . . . J 5 150.973 127.561 159.171 1 32.97 ? C2' FAD 701 B 1 HETATM 43 O O2' FAD . . . J 5 151.553 128.748 159.712 1 32.97 ? O2' FAD 701 B 1 HETATM 44 C C3' FAD . . . J 5 149.617 127.324 159.833 1 32.97 ? C3' FAD 701 B 1 HETATM 45 O O3' FAD . . . J 5 149.799 127.314 161.244 1 32.97 ? O3' FAD 701 B 1 HETATM 46 C C4' FAD . . . J 5 148.954 126.011 159.423 1 32.97 ? C4' FAD 701 B 1 HETATM 47 O O4' FAD . . . J 5 148.861 125.941 158.001 1 32.97 ? O4' FAD 701 B 1 HETATM 48 C C5' FAD . . . J 5 147.58 125.828 160.024 1 32.97 ? C5' FAD 701 B 1 HETATM 49 O O5' FAD . . . J 5 146.957 124.685 159.404 1 32.97 ? O5' FAD 701 B 1 HETATM 50 P P FAD . . . J 5 145.408 124.631 159.16 1 32.97 ? P FAD 701 B 1 HETATM 51 O O1P FAD . . . J 5 145.127 123.331 158.405 1 32.97 ? O1P FAD 701 B 1 HETATM 52 O O2P FAD . . . J 5 144.923 125.852 158.542 1 32.97 ? O2P FAD 701 B 1 HETATM 53 O O3P FAD . . . J 5 144.824 124.493 160.612 1 32.97 ? O3P FAD 701 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #