data_7KOL # _model_server_result.job_id 0FnRTHgpMkXpY0qilxVqkg _model_server_result.datetime_utc '2024-11-21 10:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7KOL # _exptl.entry_id 7KOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.396 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(E)-(hydroxyimino)methyl]-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KOL _cell.length_a 114.178 _cell.length_b 114.178 _cell.length_c 220.531 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 65 A ASP 62 1_555 E ZN ZN . A ZN 504 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc2 A ND1 HIS 76 A HIS 73 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 A ND1 HIS 92 A HIS 89 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 A OD2 ASP 111 A ASP 108 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 A SG CYS 114 A CYS 111 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 A SG CYS 192 A CYS 189 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc7 A SG CYS 195 A CYS 192 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 A SG CYS 227 A CYS 224 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc9 A SG CYS 229 A CYS 226 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc10 A SG CYS 273 A CYS 270 1_555 D ZN ZN . A ZN 503 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc11 A ND1 HIS 275 A HIS 272 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc12 F ZN ZN . A ZN 505 1_555 L O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'C21 H20 N2 O2' _chem_comp.formula_weight 332.396 _chem_comp.id Y96 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(E)-(hydroxyimino)methyl]-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 Y96 doub 401 n y C10 C9 Y96 sing 402 n y C11 C6 Y96 sing 403 n y C9 C8 Y96 doub 404 n y C6 C5 Y96 doub 405 n y C6 C7 Y96 sing 406 n y C8 C7 Y96 sing 407 n y C5 C4 Y96 sing 408 n y C7 C2 Y96 doub 409 n y O C Y96 doub 410 n n O23 N22 Y96 sing 411 n n C21 N22 Y96 doub 412 e n C21 C15 Y96 sing 413 n n C4 C3 Y96 doub 414 n y C14 C15 Y96 doub 415 n y C14 C13 Y96 sing 416 n y C15 C17 Y96 sing 417 n y C C13 Y96 sing 418 n n C N Y96 sing 419 n n C2 C3 Y96 sing 420 n y C2 C1 Y96 sing 421 n n C13 C19 Y96 doub 422 n y C17 C18 Y96 doub 423 n y C19 C18 Y96 sing 424 n y C19 C20 Y96 sing 425 n n N C1 Y96 sing 426 n n C1 C12 Y96 sing 427 n n C20 H1 Y96 sing 428 n n C20 H2 Y96 sing 429 n n C20 H3 Y96 sing 430 n n C18 H4 Y96 sing 431 n n C17 H5 Y96 sing 432 n n C21 H6 Y96 sing 433 n n O23 H7 Y96 sing 434 n n C14 H8 Y96 sing 435 n n N H9 Y96 sing 436 n n C1 H10 Y96 sing 437 n n C12 H11 Y96 sing 438 n n C12 H12 Y96 sing 439 n n C12 H13 Y96 sing 440 n n C8 H14 Y96 sing 441 n n C9 H15 Y96 sing 442 n n C10 H16 Y96 sing 443 n n C11 H17 Y96 sing 444 n n C5 H18 Y96 sing 445 n n C4 H19 Y96 sing 446 n n C3 H20 Y96 sing 447 n n # _atom_sites.entry_id 7KOL _atom_sites.fract_transf_matrix[1][1] 0.008758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y96 A 1 501 501 Y96 Y96 . C 3 ZN A 1 502 502 ZN ZN . D 3 ZN A 1 503 504 ZN ZN . E 3 ZN A 1 504 505 ZN ZN . F 3 ZN A 1 505 506 ZN ZN . G 4 CL A 1 506 508 CL CL . H 4 CL A 1 507 509 CL CL . I 4 CL A 1 508 510 CL CL . J 4 CL A 1 509 511 CL CL . K 5 MES A 1 510 512 MES MES . L 6 HOH A 1 601 16 HOH HOH . L 6 HOH A 2 602 4 HOH HOH . L 6 HOH A 3 603 3 HOH HOH . L 6 HOH A 4 604 18 HOH HOH . L 6 HOH A 5 605 13 HOH HOH . L 6 HOH A 6 606 19 HOH HOH . L 6 HOH A 7 607 6 HOH HOH . L 6 HOH A 8 608 5 HOH HOH . L 6 HOH A 9 609 1 HOH HOH . L 6 HOH A 10 610 9 HOH HOH . L 6 HOH A 11 611 10 HOH HOH . L 6 HOH A 12 612 8 HOH HOH . L 6 HOH A 13 613 15 HOH HOH . L 6 HOH A 14 614 2 HOH HOH . L 6 HOH A 15 615 20 HOH HOH . L 6 HOH A 16 616 7 HOH HOH . L 6 HOH A 17 617 17 HOH HOH . L 6 HOH A 18 618 12 HOH HOH . L 6 HOH A 19 619 14 HOH HOH . L 6 HOH A 20 620 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O Y96 . . . B 2 49.402 30.815 -0.792 1 88.59 ? O Y96 501 A 1 HETATM 2 C C Y96 . . . B 2 49.995 31.394 0.127 1 90.39 ? C Y96 501 A 1 HETATM 3 C C13 Y96 . . . B 2 49.762 32.837 0.282 1 88.62 ? C13 Y96 501 A 1 HETATM 4 C C19 Y96 . . . B 2 48.499 33.398 0.787 1 91.3 ? C19 Y96 501 A 1 HETATM 5 C C20 Y96 . . . B 2 47.371 32.494 1.189 1 92.54 ? C20 Y96 501 A 1 HETATM 6 C C18 Y96 . . . B 2 48.385 34.791 0.887 1 91.18 ? C18 Y96 501 A 1 HETATM 7 C C17 Y96 . . . B 2 49.459 35.588 0.5 1 89.83 ? C17 Y96 501 A 1 HETATM 8 C C15 Y96 . . . B 2 50.63 34.999 0.015 1 95.73 ? C15 Y96 501 A 1 HETATM 9 C C21 Y96 . . . B 2 51.806 35.76 -0.422 1 105.66 ? C21 Y96 501 A 1 HETATM 10 N N22 Y96 . . . B 2 51.835 37.004 -0.391 1 118.3 ? N22 Y96 501 A 1 HETATM 11 O O23 Y96 . . . B 2 53.007 37.665 -0.789 1 134.73 ? O23 Y96 501 A 1 HETATM 12 C C14 Y96 . . . B 2 50.789 33.634 -0.063 1 91.32 ? C14 Y96 501 A 1 HETATM 13 N N Y96 . . . B 2 50.822 30.833 1.035 1 89.61 ? N Y96 501 A 1 HETATM 14 C C1 Y96 . . . B 2 51.061 29.404 1.056 1 88.91 ? C1 Y96 501 A 1 HETATM 15 C C12 Y96 . . . B 2 51.09 28.916 2.469 1 82.66 ? C12 Y96 501 A 1 HETATM 16 C C2 Y96 . . . B 2 52.292 29.14 0.236 1 90.05 ? C2 Y96 501 A 1 HETATM 17 C C7 Y96 . . . B 2 52.197 28.403 -1.05 1 90.29 ? C7 Y96 501 A 1 HETATM 18 C C8 Y96 . . . B 2 51.016 27.88 -1.542 1 91.01 ? C8 Y96 501 A 1 HETATM 19 C C9 Y96 . . . B 2 51.056 27.184 -2.767 1 96.81 ? C9 Y96 501 A 1 HETATM 20 C C10 Y96 . . . B 2 52.233 26.979 -3.505 1 93.6 ? C10 Y96 501 A 1 HETATM 21 C C11 Y96 . . . B 2 53.429 27.478 -3.046 1 91.86 ? C11 Y96 501 A 1 HETATM 22 C C6 Y96 . . . B 2 53.449 28.188 -1.836 1 92.7 ? C6 Y96 501 A 1 HETATM 23 C C5 Y96 . . . B 2 54.635 28.712 -1.331 1 92.66 ? C5 Y96 501 A 1 HETATM 24 C C4 Y96 . . . B 2 54.679 29.437 -0.137 1 92 ? C4 Y96 501 A 1 HETATM 25 C C3 Y96 . . . B 2 53.531 29.637 0.628 1 90.31 ? C3 Y96 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #