data_7KOM # _model_server_result.job_id au64FHf8BvrL8T4Nh0j4pw _model_server_result.datetime_utc '2024-11-14 19:46:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7KOM # _exptl.entry_id 7KOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KOM _cell.length_a 33.046 _cell.length_b 71.087 _cell.length_c 106.359 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 7 A GLN 22 1_555 A N MSE 8 A MSE 23 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C GLN 7 A GLN 22 1_555 A N MSE 8 A MSE 23 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C MSE 8 A MSE 23 1_555 A N ASP 9 A ASP 24 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 8 A MSE 23 1_555 A N ASP 9 A ASP 24 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C GLN 25 A GLN 40 1_555 A N MSE 26 A MSE 41 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 A C GLN 25 A GLN 40 1_555 A N MSE 26 A MSE 41 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale7 A C MSE 26 A MSE 41 1_555 A N GLU 27 A GLU 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 A C THR 33 A THR 48 1_555 A N MSE 34 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C MSE 34 A MSE 49 1_555 A N LEU 35 A LEU 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 A C PRO 96 A PRO 111 1_555 A N MSE 97 A MSE 112 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale11 A C PRO 96 A PRO 111 1_555 A N MSE 97 A MSE 112 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 A C MSE 97 A MSE 112 1_555 A N ARG 98 A ARG 113 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.335 ? covale ? covale13 A C MSE 97 A MSE 112 1_555 A N ARG 98 A ARG 113 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale14 A C GLN 126 A GLN 141 1_555 A N MSE 127 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale15 A C MSE 127 A MSE 142 1_555 A N VAL 128 A VAL 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A OG SER 125 A SER 140 1_555 D NA NA . A NA 203 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 D NA NA . A NA 203 1_555 E O HOH . A HOH 324 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 D NA NA . A NA 203 1_555 E O HOH . A HOH 367 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 D NA NA . A NA 203 1_555 E O HOH . A HOH 373 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 D NA NA . A NA 203 1_555 E O HOH . A HOH 440 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 D NA NA . A NA 203 1_555 E O HOH . A HOH 499 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7KOM _atom_sites.fract_transf_matrix[1][1] 0.030261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 201 1 FMT FMT . C 2 FMT A 1 202 2 FMT FMT . D 3 NA A 1 203 3 NA NA . E 4 HOH A 1 301 143 HOH HOH . E 4 HOH A 2 302 81 HOH HOH . E 4 HOH A 3 303 187 HOH HOH . E 4 HOH A 4 304 162 HOH HOH . E 4 HOH A 5 305 181 HOH HOH . E 4 HOH A 6 306 47 HOH HOH . E 4 HOH A 7 307 99 HOH HOH . E 4 HOH A 8 308 137 HOH HOH . E 4 HOH A 9 309 135 HOH HOH . E 4 HOH A 10 310 136 HOH HOH . E 4 HOH A 11 311 138 HOH HOH . E 4 HOH A 12 312 98 HOH HOH . E 4 HOH A 13 313 186 HOH HOH . E 4 HOH A 14 314 174 HOH HOH . E 4 HOH A 15 315 20 HOH HOH . E 4 HOH A 16 316 208 HOH HOH . E 4 HOH A 17 317 107 HOH HOH . E 4 HOH A 18 318 170 HOH HOH . E 4 HOH A 19 319 25 HOH HOH . E 4 HOH A 20 320 189 HOH HOH . E 4 HOH A 21 321 177 HOH HOH . E 4 HOH A 22 322 132 HOH HOH . E 4 HOH A 23 323 28 HOH HOH . E 4 HOH A 24 324 26 HOH HOH . E 4 HOH A 25 325 105 HOH HOH . E 4 HOH A 26 326 102 HOH HOH . E 4 HOH A 27 327 120 HOH HOH . E 4 HOH A 28 328 61 HOH HOH . E 4 HOH A 29 329 124 HOH HOH . E 4 HOH A 30 330 191 HOH HOH . E 4 HOH A 31 331 73 HOH HOH . E 4 HOH A 32 332 118 HOH HOH . E 4 HOH A 33 333 21 HOH HOH . E 4 HOH A 34 334 113 HOH HOH . E 4 HOH A 35 335 166 HOH HOH . E 4 HOH A 36 336 43 HOH HOH . E 4 HOH A 37 337 49 HOH HOH . E 4 HOH A 38 338 33 HOH HOH . E 4 HOH A 39 339 14 HOH HOH . E 4 HOH A 40 340 179 HOH HOH . E 4 HOH A 41 341 130 HOH HOH . E 4 HOH A 42 342 32 HOH HOH . E 4 HOH A 43 343 65 HOH HOH . E 4 HOH A 44 344 9 HOH HOH . E 4 HOH A 45 345 63 HOH HOH . E 4 HOH A 46 346 74 HOH HOH . E 4 HOH A 47 347 11 HOH HOH . E 4 HOH A 48 348 4 HOH HOH . E 4 HOH A 49 349 140 HOH HOH . E 4 HOH A 50 350 172 HOH HOH . E 4 HOH A 51 351 89 HOH HOH . E 4 HOH A 52 352 75 HOH HOH . E 4 HOH A 53 353 60 HOH HOH . E 4 HOH A 54 354 23 HOH HOH . E 4 HOH A 55 355 6 HOH HOH . E 4 HOH A 56 356 128 HOH HOH . E 4 HOH A 57 357 86 HOH HOH . E 4 HOH A 58 358 151 HOH HOH . E 4 HOH A 59 359 171 HOH HOH . E 4 HOH A 60 360 77 HOH HOH . E 4 HOH A 61 361 70 HOH HOH . E 4 HOH A 62 362 46 HOH HOH . E 4 HOH A 63 363 19 HOH HOH . E 4 HOH A 64 364 76 HOH HOH . E 4 HOH A 65 365 103 HOH HOH . E 4 HOH A 66 366 185 HOH HOH . E 4 HOH A 67 367 100 HOH HOH . E 4 HOH A 68 368 7 HOH HOH . E 4 HOH A 69 369 156 HOH HOH . E 4 HOH A 70 370 134 HOH HOH . E 4 HOH A 71 371 82 HOH HOH . E 4 HOH A 72 372 16 HOH HOH . E 4 HOH A 73 373 31 HOH HOH . E 4 HOH A 74 374 55 HOH HOH . E 4 HOH A 75 375 24 HOH HOH . E 4 HOH A 76 376 169 HOH HOH . E 4 HOH A 77 377 91 HOH HOH . E 4 HOH A 78 378 48 HOH HOH . E 4 HOH A 79 379 131 HOH HOH . E 4 HOH A 80 380 146 HOH HOH . E 4 HOH A 81 381 83 HOH HOH . E 4 HOH A 82 382 12 HOH HOH . E 4 HOH A 83 383 15 HOH HOH . E 4 HOH A 84 384 27 HOH HOH . E 4 HOH A 85 385 165 HOH HOH . E 4 HOH A 86 386 58 HOH HOH . E 4 HOH A 87 387 154 HOH HOH . E 4 HOH A 88 388 192 HOH HOH . E 4 HOH A 89 389 67 HOH HOH . E 4 HOH A 90 390 184 HOH HOH . E 4 HOH A 91 391 35 HOH HOH . E 4 HOH A 92 392 18 HOH HOH . E 4 HOH A 93 393 38 HOH HOH . E 4 HOH A 94 394 153 HOH HOH . E 4 HOH A 95 395 37 HOH HOH . E 4 HOH A 96 396 84 HOH HOH . E 4 HOH A 97 397 147 HOH HOH . E 4 HOH A 98 398 56 HOH HOH . E 4 HOH A 99 399 123 HOH HOH . E 4 HOH A 100 400 50 HOH HOH . E 4 HOH A 101 401 57 HOH HOH . E 4 HOH A 102 402 53 HOH HOH . E 4 HOH A 103 403 40 HOH HOH . E 4 HOH A 104 404 111 HOH HOH . E 4 HOH A 105 405 90 HOH HOH . E 4 HOH A 106 406 173 HOH HOH . E 4 HOH A 107 407 199 HOH HOH . E 4 HOH A 108 408 133 HOH HOH . E 4 HOH A 109 409 141 HOH HOH . E 4 HOH A 110 410 101 HOH HOH . E 4 HOH A 111 411 180 HOH HOH . E 4 HOH A 112 412 159 HOH HOH . E 4 HOH A 113 413 85 HOH HOH . E 4 HOH A 114 414 41 HOH HOH . E 4 HOH A 115 415 72 HOH HOH . E 4 HOH A 116 416 44 HOH HOH . E 4 HOH A 117 417 96 HOH HOH . E 4 HOH A 118 418 139 HOH HOH . E 4 HOH A 119 419 195 HOH HOH . E 4 HOH A 120 420 68 HOH HOH . E 4 HOH A 121 421 71 HOH HOH . E 4 HOH A 122 422 22 HOH HOH . E 4 HOH A 123 423 78 HOH HOH . E 4 HOH A 124 424 5 HOH HOH . E 4 HOH A 125 425 194 HOH HOH . E 4 HOH A 126 426 144 HOH HOH . E 4 HOH A 127 427 34 HOH HOH . E 4 HOH A 128 428 42 HOH HOH . E 4 HOH A 129 429 110 HOH HOH . E 4 HOH A 130 430 112 HOH HOH . E 4 HOH A 131 431 94 HOH HOH . E 4 HOH A 132 432 17 HOH HOH . E 4 HOH A 133 433 198 HOH HOH . E 4 HOH A 134 434 116 HOH HOH . E 4 HOH A 135 435 66 HOH HOH . E 4 HOH A 136 436 161 HOH HOH . E 4 HOH A 137 437 59 HOH HOH . E 4 HOH A 138 438 164 HOH HOH . E 4 HOH A 139 439 10 HOH HOH . E 4 HOH A 140 440 54 HOH HOH . E 4 HOH A 141 441 97 HOH HOH . E 4 HOH A 142 442 129 HOH HOH . E 4 HOH A 143 443 119 HOH HOH . E 4 HOH A 144 444 200 HOH HOH . E 4 HOH A 145 445 182 HOH HOH . E 4 HOH A 146 446 51 HOH HOH . E 4 HOH A 147 447 115 HOH HOH . E 4 HOH A 148 448 158 HOH HOH . E 4 HOH A 149 449 125 HOH HOH . E 4 HOH A 150 450 201 HOH HOH . E 4 HOH A 151 451 178 HOH HOH . E 4 HOH A 152 452 193 HOH HOH . E 4 HOH A 153 453 160 HOH HOH . E 4 HOH A 154 454 150 HOH HOH . E 4 HOH A 155 455 197 HOH HOH . E 4 HOH A 156 456 87 HOH HOH . E 4 HOH A 157 457 79 HOH HOH . E 4 HOH A 158 458 80 HOH HOH . E 4 HOH A 159 459 117 HOH HOH . E 4 HOH A 160 460 149 HOH HOH . E 4 HOH A 161 461 168 HOH HOH . E 4 HOH A 162 462 88 HOH HOH . E 4 HOH A 163 463 30 HOH HOH . E 4 HOH A 164 464 39 HOH HOH . E 4 HOH A 165 465 93 HOH HOH . E 4 HOH A 166 466 122 HOH HOH . E 4 HOH A 167 467 109 HOH HOH . E 4 HOH A 168 468 36 HOH HOH . E 4 HOH A 169 469 167 HOH HOH . E 4 HOH A 170 470 29 HOH HOH . E 4 HOH A 171 471 106 HOH HOH . E 4 HOH A 172 472 142 HOH HOH . E 4 HOH A 173 473 206 HOH HOH . E 4 HOH A 174 474 188 HOH HOH . E 4 HOH A 175 475 62 HOH HOH . E 4 HOH A 176 476 152 HOH HOH . E 4 HOH A 177 477 108 HOH HOH . E 4 HOH A 178 478 95 HOH HOH . E 4 HOH A 179 479 155 HOH HOH . E 4 HOH A 180 480 69 HOH HOH . E 4 HOH A 181 481 45 HOH HOH . E 4 HOH A 182 482 13 HOH HOH . E 4 HOH A 183 483 183 HOH HOH . E 4 HOH A 184 484 190 HOH HOH . E 4 HOH A 185 485 8 HOH HOH . E 4 HOH A 186 486 104 HOH HOH . E 4 HOH A 187 487 202 HOH HOH . E 4 HOH A 188 488 145 HOH HOH . E 4 HOH A 189 489 207 HOH HOH . E 4 HOH A 190 490 64 HOH HOH . E 4 HOH A 191 491 196 HOH HOH . E 4 HOH A 192 492 163 HOH HOH . E 4 HOH A 193 493 175 HOH HOH . E 4 HOH A 194 494 176 HOH HOH . E 4 HOH A 195 495 121 HOH HOH . E 4 HOH A 196 496 92 HOH HOH . E 4 HOH A 197 497 203 HOH HOH . E 4 HOH A 198 498 114 HOH HOH . E 4 HOH A 199 499 157 HOH HOH . E 4 HOH A 200 500 148 HOH HOH . E 4 HOH A 201 501 204 HOH HOH . E 4 HOH A 202 502 52 HOH HOH . E 4 HOH A 203 503 210 HOH HOH . E 4 HOH A 204 504 205 HOH HOH . E 4 HOH A 205 505 209 HOH HOH . E 4 HOH A 206 506 127 HOH HOH . E 4 HOH A 207 507 126 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.102 _atom_site.Cartn_y 16.604 _atom_site.Cartn_z 32.649 _atom_site.occupancy 0.6 _atom_site.B_iso_or_equiv 11.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #