data_7KOT # _model_server_result.job_id P5jHgss21PKJkzGZ1TsPzg _model_server_result.datetime_utc '2024-11-29 09:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7KOT # _exptl.entry_id 7KOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.397 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECYL SULFATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KOT _cell.length_a 53.652 _cell.length_b 53.652 _cell.length_c 112.021 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C12 H26 O4 S' _chem_comp.formula_weight 266.397 _chem_comp.id SDS _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECYL SULFATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1S SDS doub 277 n n S O2S SDS sing 278 n n S O3S SDS sing 279 n n S O4 SDS doub 280 n n O2S C1 SDS sing 281 n n O3S H3S SDS sing 282 n n C1 C12 SDS sing 283 n n C1 H1C1 SDS sing 284 n n C1 H1C2 SDS sing 285 n n C2 C3 SDS sing 286 n n C2 H2C1 SDS sing 287 n n C2 H2C2 SDS sing 288 n n C2 H2C3 SDS sing 289 n n C3 C4 SDS sing 290 n n C3 H3C1 SDS sing 291 n n C3 H3C2 SDS sing 292 n n C4 C5 SDS sing 293 n n C4 H4C1 SDS sing 294 n n C4 H4C2 SDS sing 295 n n C5 C6 SDS sing 296 n n C5 H5C1 SDS sing 297 n n C5 H5C2 SDS sing 298 n n C6 C7 SDS sing 299 n n C6 H6C1 SDS sing 300 n n C6 H6C2 SDS sing 301 n n C7 C8 SDS sing 302 n n C7 H7C1 SDS sing 303 n n C7 H7C2 SDS sing 304 n n C8 C9 SDS sing 305 n n C8 H8C1 SDS sing 306 n n C8 H8C2 SDS sing 307 n n C9 C10 SDS sing 308 n n C9 H9C1 SDS sing 309 n n C9 H9C2 SDS sing 310 n n C10 C11 SDS sing 311 n n C10 H101 SDS sing 312 n n C10 H102 SDS sing 313 n n C11 C12 SDS sing 314 n n C11 H111 SDS sing 315 n n C11 H112 SDS sing 316 n n C12 H121 SDS sing 317 n n C12 H122 SDS sing 318 n n # _atom_sites.entry_id 7KOT _atom_sites.fract_transf_matrix[1][1] 0.018639 _atom_sites.fract_transf_matrix[1][2] 0.010761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SDS A 1 201 201 SDS SDS . C 3 HOH A 1 301 100 HOH HOH . C 3 HOH A 2 302 82 HOH HOH . C 3 HOH A 3 303 53 HOH HOH . C 3 HOH A 4 304 93 HOH HOH . C 3 HOH A 5 305 28 HOH HOH . C 3 HOH A 6 306 102 HOH HOH . C 3 HOH A 7 307 52 HOH HOH . C 3 HOH A 8 308 55 HOH HOH . C 3 HOH A 9 309 103 HOH HOH . C 3 HOH A 10 310 99 HOH HOH . C 3 HOH A 11 311 30 HOH HOH . C 3 HOH A 12 312 81 HOH HOH . C 3 HOH A 13 313 67 HOH HOH . C 3 HOH A 14 314 24 HOH HOH . C 3 HOH A 15 315 51 HOH HOH . C 3 HOH A 16 316 27 HOH HOH . C 3 HOH A 17 317 92 HOH HOH . C 3 HOH A 18 318 1 HOH HOH . C 3 HOH A 19 319 31 HOH HOH . C 3 HOH A 20 320 23 HOH HOH . C 3 HOH A 21 321 66 HOH HOH . C 3 HOH A 22 322 21 HOH HOH . C 3 HOH A 23 323 16 HOH HOH . C 3 HOH A 24 324 46 HOH HOH . C 3 HOH A 25 325 11 HOH HOH . C 3 HOH A 26 326 19 HOH HOH . C 3 HOH A 27 327 45 HOH HOH . C 3 HOH A 28 328 125 HOH HOH . C 3 HOH A 29 329 14 HOH HOH . C 3 HOH A 30 330 18 HOH HOH . C 3 HOH A 31 331 3 HOH HOH . C 3 HOH A 32 332 78 HOH HOH . C 3 HOH A 33 333 15 HOH HOH . C 3 HOH A 34 334 71 HOH HOH . C 3 HOH A 35 335 10 HOH HOH . C 3 HOH A 36 336 123 HOH HOH . C 3 HOH A 37 337 105 HOH HOH . C 3 HOH A 38 338 104 HOH HOH . C 3 HOH A 39 339 25 HOH HOH . C 3 HOH A 40 340 54 HOH HOH . C 3 HOH A 41 341 86 HOH HOH . C 3 HOH A 42 342 5 HOH HOH . C 3 HOH A 43 343 74 HOH HOH . C 3 HOH A 44 344 33 HOH HOH . C 3 HOH A 45 345 29 HOH HOH . C 3 HOH A 46 346 50 HOH HOH . C 3 HOH A 47 347 39 HOH HOH . C 3 HOH A 48 348 61 HOH HOH . C 3 HOH A 49 349 6 HOH HOH . C 3 HOH A 50 350 114 HOH HOH . C 3 HOH A 51 351 49 HOH HOH . C 3 HOH A 52 352 94 HOH HOH . C 3 HOH A 53 353 70 HOH HOH . C 3 HOH A 54 354 91 HOH HOH . C 3 HOH A 55 355 2 HOH HOH . C 3 HOH A 56 356 120 HOH HOH . C 3 HOH A 57 357 8 HOH HOH . C 3 HOH A 58 358 113 HOH HOH . C 3 HOH A 59 359 41 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 128 HOH HOH . C 3 HOH A 62 362 56 HOH HOH . C 3 HOH A 63 363 106 HOH HOH . C 3 HOH A 64 364 116 HOH HOH . C 3 HOH A 65 365 62 HOH HOH . C 3 HOH A 66 366 37 HOH HOH . C 3 HOH A 67 367 47 HOH HOH . C 3 HOH A 68 368 20 HOH HOH . C 3 HOH A 69 369 89 HOH HOH . C 3 HOH A 70 370 4 HOH HOH . C 3 HOH A 71 371 22 HOH HOH . C 3 HOH A 72 372 126 HOH HOH . C 3 HOH A 73 373 35 HOH HOH . C 3 HOH A 74 374 80 HOH HOH . C 3 HOH A 75 375 17 HOH HOH . C 3 HOH A 76 376 115 HOH HOH . C 3 HOH A 77 377 43 HOH HOH . C 3 HOH A 78 378 26 HOH HOH . C 3 HOH A 79 379 9 HOH HOH . C 3 HOH A 80 380 36 HOH HOH . C 3 HOH A 81 381 84 HOH HOH . C 3 HOH A 82 382 97 HOH HOH . C 3 HOH A 83 383 124 HOH HOH . C 3 HOH A 84 384 7 HOH HOH . C 3 HOH A 85 385 121 HOH HOH . C 3 HOH A 86 386 79 HOH HOH . C 3 HOH A 87 387 112 HOH HOH . C 3 HOH A 88 388 88 HOH HOH . C 3 HOH A 89 389 83 HOH HOH . C 3 HOH A 90 390 68 HOH HOH . C 3 HOH A 91 391 57 HOH HOH . C 3 HOH A 92 392 96 HOH HOH . C 3 HOH A 93 393 108 HOH HOH . C 3 HOH A 94 394 107 HOH HOH . C 3 HOH A 95 395 12 HOH HOH . C 3 HOH A 96 396 90 HOH HOH . C 3 HOH A 97 397 38 HOH HOH . C 3 HOH A 98 398 111 HOH HOH . C 3 HOH A 99 399 44 HOH HOH . C 3 HOH A 100 400 13 HOH HOH . C 3 HOH A 101 401 117 HOH HOH . C 3 HOH A 102 402 119 HOH HOH . C 3 HOH A 103 403 32 HOH HOH . C 3 HOH A 104 404 85 HOH HOH . C 3 HOH A 105 405 110 HOH HOH . C 3 HOH A 106 406 72 HOH HOH . C 3 HOH A 107 407 122 HOH HOH . C 3 HOH A 108 408 101 HOH HOH . C 3 HOH A 109 409 76 HOH HOH . C 3 HOH A 110 410 69 HOH HOH . C 3 HOH A 111 411 98 HOH HOH . C 3 HOH A 112 412 87 HOH HOH . C 3 HOH A 113 413 127 HOH HOH . C 3 HOH A 114 414 48 HOH HOH . C 3 HOH A 115 415 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SDS . . . B 2 4.27 -1.584 1.089 1 56.1 ? S SDS 201 A 1 HETATM 2 O O1S SDS . . . B 2 4.031 -3.089 0.607 1 53.46 ? O1S SDS 201 A 1 HETATM 3 O O2S SDS . . . B 2 5.787 -1.386 1.501 1 53.19 ? O2S SDS 201 A 1 HETATM 4 O O3S SDS . . . B 2 3.378 -1.185 2.17 1 49.98 ? O3S SDS 201 A 1 HETATM 5 O O4 SDS . . . B 2 3.965 -0.759 -0.054 1 62.93 ? O4 SDS 201 A 1 HETATM 6 C C1 SDS . . . B 2 6.594 -0.198 1.549 1 50.26 ? C1 SDS 201 A 1 HETATM 7 C C2 SDS . . . B 2 18.138 -5.161 -2.31 1 33.37 ? C2 SDS 201 A 1 HETATM 8 C C3 SDS . . . B 2 17.131 -5.405 -1.348 1 32.22 ? C3 SDS 201 A 1 HETATM 9 C C4 SDS . . . B 2 16.114 -4.395 -1.475 1 36.33 ? C4 SDS 201 A 1 HETATM 10 C C5 SDS . . . B 2 15.37 -4.854 -0.319 1 34.8 ? C5 SDS 201 A 1 HETATM 11 C C6 SDS . . . B 2 13.97 -4.59 -0.404 1 35.6 ? C6 SDS 201 A 1 HETATM 12 C C7 SDS . . . B 2 13.516 -3.241 -0.367 1 34.22 ? C7 SDS 201 A 1 HETATM 13 C C8 SDS . . . B 2 12.16 -3.321 0.275 1 34.11 ? C8 SDS 201 A 1 HETATM 14 C C9 SDS . . . B 2 11.258 -2.122 0.004 1 37.91 ? C9 SDS 201 A 1 HETATM 15 C C10 SDS . . . B 2 9.94 -2.037 0.713 1 39.02 ? C10 SDS 201 A 1 HETATM 16 C C11 SDS . . . B 2 8.995 -0.833 0.553 1 43.37 ? C11 SDS 201 A 1 HETATM 17 C C12 SDS . . . B 2 8.066 -0.599 1.719 1 45.53 ? C12 SDS 201 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 17 #