data_7KOZ # _model_server_result.job_id N3uGqToU8Ltn6t-ZojE3QQ _model_server_result.datetime_utc '2024-11-22 06:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7koz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7KOZ # _exptl.entry_id 7KOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KOZ _cell.length_a 42.188 _cell.length_b 90.034 _cell.length_c 105.083 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 102 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 26 B CYS 26 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 G C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7KOZ _atom_sites.fract_transf_matrix[1][1] 0.023703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 WU7 A 1 301 301 WU7 WEG . D 4 EDO A 1 302 401 EDO EDO . E 4 EDO A 1 303 501 EDO EDO . F 4 EDO A 1 304 601 EDO EDO . G 5 NAG A 1 305 602 NAG NAG . H 4 EDO A 1 306 201 EDO EDO . I 6 HOH A 1 401 71 HOH HOH . I 6 HOH A 2 402 87 HOH HOH . I 6 HOH A 3 403 88 HOH HOH . I 6 HOH A 4 404 36 HOH HOH . I 6 HOH A 5 405 84 HOH HOH . I 6 HOH A 6 406 73 HOH HOH . I 6 HOH A 7 407 60 HOH HOH . I 6 HOH A 8 408 6 HOH HOH . I 6 HOH A 9 409 16 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 49 HOH HOH . I 6 HOH A 12 412 42 HOH HOH . I 6 HOH A 13 413 67 HOH HOH . I 6 HOH A 14 414 50 HOH HOH . I 6 HOH A 15 415 21 HOH HOH . I 6 HOH A 16 416 45 HOH HOH . I 6 HOH A 17 417 15 HOH HOH . I 6 HOH A 18 418 30 HOH HOH . I 6 HOH A 19 419 54 HOH HOH . I 6 HOH A 20 420 4 HOH HOH . I 6 HOH A 21 421 2 HOH HOH . I 6 HOH A 22 422 66 HOH HOH . I 6 HOH A 23 423 85 HOH HOH . I 6 HOH A 24 424 32 HOH HOH . I 6 HOH A 25 425 3 HOH HOH . I 6 HOH A 26 426 80 HOH HOH . I 6 HOH A 27 427 37 HOH HOH . I 6 HOH A 28 428 57 HOH HOH . I 6 HOH A 29 429 11 HOH HOH . I 6 HOH A 30 430 8 HOH HOH . I 6 HOH A 31 431 51 HOH HOH . I 6 HOH A 32 432 33 HOH HOH . I 6 HOH A 33 433 18 HOH HOH . I 6 HOH A 34 434 26 HOH HOH . I 6 HOH A 35 435 41 HOH HOH . I 6 HOH A 36 436 35 HOH HOH . I 6 HOH A 37 437 31 HOH HOH . I 6 HOH A 38 438 63 HOH HOH . I 6 HOH A 39 439 68 HOH HOH . I 6 HOH A 40 440 20 HOH HOH . I 6 HOH A 41 441 55 HOH HOH . I 6 HOH A 42 442 58 HOH HOH . I 6 HOH A 43 443 44 HOH HOH . I 6 HOH A 44 444 69 HOH HOH . I 6 HOH A 45 445 70 HOH HOH . I 6 HOH A 46 446 22 HOH HOH . I 6 HOH A 47 447 81 HOH HOH . I 6 HOH A 48 448 75 HOH HOH . I 6 HOH A 49 449 82 HOH HOH . I 6 HOH A 50 450 52 HOH HOH . I 6 HOH A 51 451 78 HOH HOH . I 6 HOH A 52 452 65 HOH HOH . I 6 HOH A 53 453 59 HOH HOH . I 6 HOH A 54 454 25 HOH HOH . I 6 HOH A 55 455 61 HOH HOH . I 6 HOH A 56 456 79 HOH HOH . I 6 HOH A 57 457 47 HOH HOH . I 6 HOH A 58 458 77 HOH HOH . I 6 HOH A 59 459 76 HOH HOH . J 6 HOH B 1 201 64 HOH HOH . J 6 HOH B 2 202 39 HOH HOH . J 6 HOH B 3 203 5 HOH HOH . J 6 HOH B 4 204 43 HOH HOH . J 6 HOH B 5 205 19 HOH HOH . J 6 HOH B 6 206 29 HOH HOH . J 6 HOH B 7 207 17 HOH HOH . J 6 HOH B 8 208 1 HOH HOH . J 6 HOH B 9 209 83 HOH HOH . J 6 HOH B 10 210 46 HOH HOH . J 6 HOH B 11 211 28 HOH HOH . J 6 HOH B 12 212 13 HOH HOH . J 6 HOH B 13 213 12 HOH HOH . J 6 HOH B 14 214 24 HOH HOH . J 6 HOH B 15 215 74 HOH HOH . J 6 HOH B 16 216 48 HOH HOH . J 6 HOH B 17 217 27 HOH HOH . J 6 HOH B 18 218 14 HOH HOH . J 6 HOH B 19 219 7 HOH HOH . J 6 HOH B 20 220 72 HOH HOH . J 6 HOH B 21 221 38 HOH HOH . J 6 HOH B 22 222 86 HOH HOH . J 6 HOH B 23 223 40 HOH HOH . J 6 HOH B 24 224 23 HOH HOH . J 6 HOH B 25 225 53 HOH HOH . J 6 HOH B 26 226 56 HOH HOH . J 6 HOH B 27 227 34 HOH HOH . J 6 HOH B 28 228 9 HOH HOH . J 6 HOH B 29 229 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 22.606 40.531 39.366 1 52.06 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 4 24.034 40.641 39.349 1 56.87 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 4 21.988 41.873 38.994 1 54.32 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 4 20.581 41.707 38.783 1 58.96 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #